Wall clock time and date at job start Mon Mar 30 2020 03:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30519 * 1 3 3 Si 1.86800 * 120.00208 * 2 1 4 4 H 1.48496 * 109.47214 * 274.98845 * 3 2 1 5 5 H 1.48504 * 109.47047 * 34.98839 * 3 2 1 6 6 H 1.48501 * 109.47311 * 154.98782 * 3 2 1 7 7 C 1.40359 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00384 * 186.09845 * 7 2 1 9 9 C 1.41671 * 119.99645 * 6.10101 * 7 2 1 10 10 O 1.21837 * 120.00203 * 353.18289 * 9 7 2 11 11 C 1.47560 * 120.00046 * 173.18104 * 9 7 2 12 12 C 1.40050 * 120.05112 * 359.97438 * 11 9 7 13 13 C 1.37703 * 120.11216 * 179.97438 * 12 11 9 14 14 C 1.38893 * 120.06378 * 0.02562 * 13 12 11 15 15 C 1.39982 * 120.10251 * 0.02562 * 14 13 12 16 16 C 1.37957 * 120.11990 * 359.97438 * 15 14 13 17 17 N 1.40152 * 119.22513 * 179.97438 * 15 14 13 18 18 C 1.35083 * 118.95979 * 15.79689 * 17 15 14 19 19 O 1.21293 * 120.11863 * 181.39933 * 18 17 15 20 20 C 1.50734 * 119.76195 * 1.15614 * 18 17 15 21 21 O 1.35759 * 120.52730 * 180.09367 * 14 13 12 22 22 H 0.97008 * 120.00133 * 359.97438 * 1 2 3 23 23 H 1.08002 * 119.94097 * 359.94997 * 12 11 9 24 24 H 1.07997 * 119.96942 * 179.97438 * 13 12 11 25 25 H 1.08008 * 120.14643 * 180.02562 * 16 15 14 26 26 H 0.96995 * 120.51515 * 195.52308 * 17 15 14 27 27 H 1.08993 * 109.54548 * 208.83802 * 20 18 17 28 28 H 1.09006 * 109.18704 * 89.00277 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6177 0.0000 4 1 2.3813 2.1073 -1.3947 5 1 1.4934 2.6199 0.8028 6 1 3.5855 1.4120 0.5920 7 6 2.0070 -1.2155 0.0005 8 1 3.0824 -1.2182 0.0999 9 6 1.3046 -2.4390 -0.1293 10 8 0.0863 -2.4464 -0.1165 11 6 2.0485 -3.7044 -0.2801 12 6 3.4489 -3.6971 -0.2955 13 6 4.1444 -4.8773 -0.4357 14 6 3.4584 -6.0784 -0.5626 15 6 2.0587 -6.0923 -0.5490 16 6 1.3560 -4.9133 -0.4090 17 7 1.3852 -7.3145 -0.6791 18 6 2.0717 -8.4627 -0.4917 19 8 1.5159 -9.5326 -0.6239 20 6 3.5323 -8.4096 -0.1231 21 8 4.1346 -7.2476 -0.6994 22 1 -0.4851 0.8401 0.0004 23 1 3.9842 -2.7642 -0.1978 24 1 5.2243 -4.8690 -0.4477 25 1 0.2760 -4.9236 -0.3980 26 1 0.4401 -7.3354 -0.8962 27 1 4.0352 -9.3016 -0.4963 28 1 3.6266 -8.3670 0.9620 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036240756.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:32 Heat of formation + Delta-G solvation = -85.285288 kcal Electronic energy + Delta-G solvation = -16958.203237 eV Core-core repulsion = 13939.440269 eV Total energy + Delta-G solvation = -3018.762967 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.19314 -38.71593 -37.65286 -36.11503 -34.79937 -32.82844 -30.24856 -29.69549 -28.05287 -26.52669 -23.72112 -22.42096 -20.93003 -19.09021 -18.59475 -17.79802 -17.00234 -16.07353 -15.82796 -15.58465 -14.91029 -14.57365 -14.19874 -13.99666 -13.55367 -13.11173 -13.03748 -12.57085 -12.23449 -11.95097 -11.44279 -11.25417 -11.07432 -11.02119 -10.46523 -10.35960 -10.23007 -9.95315 -9.08412 -8.23209 -7.64017 -7.58511 -6.45211 -5.03984 1.29920 1.60740 2.37929 2.85435 2.97939 3.06795 3.09802 3.39939 3.80960 3.91247 4.06204 4.46348 4.86946 4.92190 5.05313 5.50647 5.61760 5.63734 5.82724 5.94828 6.08319 6.35451 6.58803 6.66634 6.94937 7.07407 7.10736 7.12744 7.53070 7.82082 7.90197 8.65550 8.68193 10.16550 10.37927 Molecular weight = 247.07amu Principal moments of inertia in cm(-1) A = 0.048529 B = 0.005366 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.838143 B = 5216.464832 C = 5759.843978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.731 5.731 2 C 0.078 3.922 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.512 4.512 8 H 0.078 0.922 9 C 0.384 3.616 10 O -0.541 6.541 11 C -0.089 4.089 12 C -0.083 4.083 13 C -0.119 4.119 14 C 0.060 3.940 15 C 0.072 3.928 16 C -0.094 4.094 17 N -0.654 5.654 18 C 0.490 3.510 19 O -0.528 6.528 20 C 0.052 3.948 21 O -0.305 6.305 22 H 0.276 0.724 23 H 0.143 0.857 24 H 0.133 0.867 25 H 0.136 0.864 26 H 0.415 0.585 27 H 0.140 0.860 28 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.136 -7.692 0.181 11.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.146 4.146 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.543 4.543 8 H 0.096 0.904 9 C 0.280 3.720 10 O -0.432 6.432 11 C -0.092 4.092 12 C -0.102 4.102 13 C -0.138 4.138 14 C 0.014 3.986 15 C -0.022 4.022 16 C -0.114 4.114 17 N -0.301 5.301 18 C 0.277 3.723 19 O -0.405 6.405 20 C -0.027 4.027 21 O -0.220 6.220 22 H 0.087 0.913 23 H 0.161 0.839 24 H 0.151 0.849 25 H 0.154 0.846 26 H 0.254 0.746 27 H 0.158 0.842 28 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.428 -8.328 0.063 11.159 hybrid contribution -0.118 0.679 -0.028 0.689 sum 7.310 -7.649 0.035 10.580 Atomic orbital electron populations 1.69951 1.07650 1.28383 1.29931 1.26026 0.94664 1.01181 0.92705 0.86321 0.80541 0.80780 0.79144 1.19360 1.20103 1.18336 1.20928 0.95492 0.91632 1.46209 0.90434 1.18045 0.88473 0.85532 0.79928 1.90528 1.14971 1.87692 1.49970 1.21849 0.94154 0.97023 0.96127 1.21490 0.93851 0.97365 0.97449 1.20479 1.00044 0.89735 1.03554 1.18755 0.87819 0.86425 1.05587 1.17989 0.90649 0.86140 1.07411 1.20881 1.00660 0.89677 1.00220 1.43699 1.13745 1.04377 1.68233 1.21546 0.90507 0.83570 0.76713 1.90776 1.71101 1.28375 1.50215 1.23079 0.89206 0.89611 1.00765 1.86151 1.46924 1.14057 1.74842 0.91300 0.83937 0.84891 0.84586 0.74620 0.84210 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.08 11.76 55.57 0.65 -19.43 15 2 C 0.08 1.99 5.49 -17.31 -0.10 1.89 15 3 Si 0.91 18.16 29.57 -169.99 -5.03 13.14 15 4 H -0.27 -5.29 7.11 56.52 0.40 -4.88 15 5 H -0.28 -5.43 7.11 56.52 0.40 -5.03 15 6 H -0.26 -4.98 7.11 56.52 0.40 -4.58 15 7 C -0.51 -13.11 8.83 -37.47 -0.33 -13.44 15 8 H 0.08 1.76 6.05 -52.49 -0.32 1.44 15 9 C 0.38 10.17 6.90 -34.47 -0.24 9.94 15 10 O -0.54 -16.35 14.91 5.07 0.08 -16.28 15 11 C -0.09 -1.92 5.89 -104.79 -0.62 -2.54 15 12 C -0.08 -1.48 9.42 -39.10 -0.37 -1.85 15 13 C -0.12 -1.84 9.98 -39.53 -0.39 -2.24 15 14 C 0.06 0.96 6.47 -38.69 -0.25 0.71 15 15 C 0.07 1.22 6.54 -83.50 -0.55 0.67 15 16 C -0.09 -1.82 9.48 -39.06 -0.37 -2.19 15 17 N -0.65 -9.81 5.47 -9.67 -0.05 -9.87 15 18 C 0.49 7.14 7.94 -10.83 -0.09 7.05 15 19 O -0.53 -8.92 17.95 5.55 0.10 -8.82 15 20 C 0.05 0.60 7.16 36.02 0.26 0.86 15 21 O -0.31 -4.31 10.44 -18.99 -0.20 -4.50 15 22 H 0.28 6.78 8.29 -40.82 -0.34 6.44 15 23 H 0.14 2.39 6.20 -52.49 -0.33 2.07 15 24 H 0.13 1.67 8.06 -52.49 -0.42 1.25 15 25 H 0.14 2.70 7.65 -52.48 -0.40 2.30 15 26 H 0.41 5.66 8.88 -40.82 -0.36 5.30 15 27 H 0.14 1.24 8.14 -51.93 -0.42 0.81 15 28 H 0.09 0.92 8.14 -51.93 -0.42 0.50 15 LS Contribution 256.93 15.07 3.87 3.87 Total: -1.00 -31.98 256.93 -5.42 -37.40 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -1.81 Total: 5.62 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -3.04 Total: -1.14 kcal Atomic # 7 Polarization: -29.90 SS G_CDS: 0.60 Total: -29.30 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.02 Total: -29.60 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.14 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.98 -5.42 -37.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036240756.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.881 kcal (2) G-P(sol) polarization free energy of solvation -31.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds