Wall clock time and date at job start Mon Mar 30 2020 03:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30519 * 1 3 3 Si 1.86800 * 120.00208 * 2 1 4 4 H 1.48496 * 109.47214 * 274.98845 * 3 2 1 5 5 H 1.48504 * 109.47047 * 34.98839 * 3 2 1 6 6 H 1.48501 * 109.47311 * 154.98782 * 3 2 1 7 7 C 1.40359 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00384 * 186.09845 * 7 2 1 9 9 C 1.41671 * 119.99645 * 6.10101 * 7 2 1 10 10 O 1.21837 * 120.00203 * 353.18289 * 9 7 2 11 11 C 1.47560 * 120.00046 * 173.18104 * 9 7 2 12 12 C 1.40050 * 120.05112 * 359.97438 * 11 9 7 13 13 C 1.37703 * 120.11216 * 179.97438 * 12 11 9 14 14 C 1.38893 * 120.06378 * 0.02562 * 13 12 11 15 15 C 1.39982 * 120.10251 * 0.02562 * 14 13 12 16 16 C 1.37957 * 120.11990 * 359.97438 * 15 14 13 17 17 N 1.40152 * 119.22513 * 179.97438 * 15 14 13 18 18 C 1.35083 * 118.95979 * 15.79689 * 17 15 14 19 19 O 1.21293 * 120.11863 * 181.39933 * 18 17 15 20 20 C 1.50734 * 119.76195 * 1.15614 * 18 17 15 21 21 O 1.35759 * 120.52730 * 180.09367 * 14 13 12 22 22 H 0.97008 * 120.00133 * 359.97438 * 1 2 3 23 23 H 1.08002 * 119.94097 * 359.94997 * 12 11 9 24 24 H 1.07997 * 119.96942 * 179.97438 * 13 12 11 25 25 H 1.08008 * 120.14643 * 180.02562 * 16 15 14 26 26 H 0.96995 * 120.51515 * 195.52308 * 17 15 14 27 27 H 1.08993 * 109.54548 * 208.83802 * 20 18 17 28 28 H 1.09006 * 109.18704 * 89.00277 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6177 0.0000 4 1 2.3813 2.1073 -1.3947 5 1 1.4934 2.6199 0.8028 6 1 3.5855 1.4120 0.5920 7 6 2.0070 -1.2155 0.0005 8 1 3.0824 -1.2182 0.0999 9 6 1.3046 -2.4390 -0.1293 10 8 0.0863 -2.4464 -0.1165 11 6 2.0485 -3.7044 -0.2801 12 6 3.4489 -3.6971 -0.2955 13 6 4.1444 -4.8773 -0.4357 14 6 3.4584 -6.0784 -0.5626 15 6 2.0587 -6.0923 -0.5490 16 6 1.3560 -4.9133 -0.4090 17 7 1.3852 -7.3145 -0.6791 18 6 2.0717 -8.4627 -0.4917 19 8 1.5159 -9.5326 -0.6239 20 6 3.5323 -8.4096 -0.1231 21 8 4.1346 -7.2476 -0.6994 22 1 -0.4851 0.8401 0.0004 23 1 3.9842 -2.7642 -0.1978 24 1 5.2243 -4.8690 -0.4477 25 1 0.2760 -4.9236 -0.3980 26 1 0.4401 -7.3354 -0.8962 27 1 4.0352 -9.3016 -0.4963 28 1 3.6266 -8.3670 0.9620 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036240756.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:31 Heat of formation + Delta-G solvation = -108.790511 kcal Electronic energy + Delta-G solvation = -16959.222500 eV Core-core repulsion = 13939.440269 eV Total energy + Delta-G solvation = -3019.782230 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.41790 -40.07203 -39.14775 -37.73936 -36.13779 -34.79135 -31.67764 -31.07947 -29.42011 -28.16127 -25.14487 -23.82534 -22.47548 -20.52654 -19.84783 -19.19555 -18.32097 -17.71814 -17.20940 -17.10449 -16.08299 -16.00916 -15.57551 -15.45125 -14.91815 -14.68769 -14.55329 -13.96632 -13.82086 -13.53711 -13.15209 -12.78690 -12.66472 -12.27539 -12.02021 -11.89679 -11.72501 -11.22577 -10.97326 -9.64575 -9.62445 -8.95142 -8.35925 -7.06514 -0.08203 0.21165 1.16225 1.41954 1.42980 1.59937 1.68366 2.13914 2.23500 2.30678 2.77803 2.92686 3.61596 3.71417 4.00863 4.05763 4.20633 4.35317 4.39536 4.56087 4.78713 4.96933 5.13876 5.27342 5.38581 5.61889 5.66041 5.75665 5.99383 6.27085 6.62970 6.70575 6.78917 8.23958 8.48544 Molecular weight = 247.07amu Principal moments of inertia in cm(-1) A = 0.048529 B = 0.005366 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.838143 B = 5216.464832 C = 5759.843978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.022 3.978 3 Si 0.996 3.004 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.239 1.239 7 C -0.536 4.536 8 H 0.105 0.895 9 C 0.360 3.640 10 O -0.600 6.600 11 C -0.128 4.128 12 C -0.075 4.075 13 C -0.104 4.104 14 C 0.075 3.925 15 C 0.076 3.924 16 C -0.104 4.104 17 N -0.657 5.657 18 C 0.488 3.512 19 O -0.553 6.553 20 C 0.053 3.947 21 O -0.299 6.299 22 H 0.282 0.718 23 H 0.154 0.846 24 H 0.175 0.825 25 H 0.115 0.885 26 H 0.416 0.584 27 H 0.176 0.824 28 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.768 -8.236 0.292 14.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.197 4.197 3 Si 0.814 3.186 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.161 1.161 7 C -0.566 4.566 8 H 0.123 0.877 9 C 0.261 3.739 10 O -0.495 6.495 11 C -0.130 4.130 12 C -0.094 4.094 13 C -0.122 4.122 14 C 0.028 3.972 15 C -0.018 4.018 16 C -0.125 4.125 17 N -0.303 5.303 18 C 0.277 3.723 19 O -0.431 6.431 20 C -0.025 4.025 21 O -0.214 6.214 22 H 0.092 0.908 23 H 0.172 0.828 24 H 0.193 0.807 25 H 0.133 0.867 26 H 0.255 0.745 27 H 0.193 0.807 28 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.091 -8.902 0.175 14.223 hybrid contribution -1.237 0.653 -0.071 1.400 sum 9.855 -8.249 0.104 12.852 Atomic orbital electron populations 1.70108 1.10153 1.29956 1.31365 1.27318 0.95437 1.05776 0.91202 0.85023 0.79478 0.74638 0.79455 1.18623 1.19786 1.16130 1.21487 0.96965 0.91998 1.46134 0.87725 1.18780 0.88202 0.88133 0.78791 1.90471 1.17320 1.89074 1.52639 1.21409 0.95746 0.95440 1.00399 1.21542 0.92079 0.99055 0.96719 1.20782 1.01822 0.88226 1.01387 1.18914 0.87208 0.87677 1.03378 1.17881 0.91276 0.85701 1.06990 1.20677 0.99853 0.90544 1.01426 1.43794 1.14115 1.04200 1.68197 1.22173 0.91736 0.82703 0.75725 1.90774 1.71991 1.29031 1.51284 1.23465 0.86857 0.89586 1.02555 1.86169 1.46442 1.13831 1.74937 0.90760 0.82842 0.80732 0.86689 0.74474 0.80715 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -45.20 11.76 21.89 0.26 -44.94 15 2 C 0.02 1.13 5.49 85.40 0.47 1.60 15 3 Si 1.00 36.96 29.57 68.60 2.03 38.99 15 4 H -0.26 -9.35 7.11 99.48 0.71 -8.65 15 5 H -0.27 -9.89 7.11 99.48 0.71 -9.19 15 6 H -0.24 -7.98 7.11 99.48 0.71 -7.28 15 7 C -0.54 -27.96 8.83 23.63 0.21 -27.75 15 8 H 0.10 4.66 6.05 -2.91 -0.02 4.64 15 9 C 0.36 20.08 6.90 25.58 0.18 20.25 15 10 O -0.60 -38.90 14.91 -4.79 -0.07 -38.97 15 11 C -0.13 -5.64 5.89 -19.97 -0.12 -5.76 15 12 C -0.08 -2.57 9.42 22.58 0.21 -2.36 15 13 C -0.10 -2.82 9.98 22.30 0.22 -2.59 15 14 C 0.07 2.15 6.47 22.85 0.15 2.30 15 15 C 0.08 2.50 6.54 38.17 0.25 2.75 15 16 C -0.10 -4.20 9.48 22.61 0.21 -3.99 15 17 N -0.66 -19.19 5.47 -302.73 -1.66 -20.84 15 18 C 0.49 13.13 7.94 87.62 0.70 13.82 15 19 O -0.55 -17.73 17.95 -3.07 -0.06 -17.78 15 20 C 0.05 0.99 7.16 71.25 0.51 1.50 15 21 O -0.30 -7.07 10.44 -90.86 -0.95 -8.02 15 22 H 0.28 14.48 8.29 -92.70 -0.77 13.71 15 23 H 0.15 4.80 6.20 -2.91 -0.02 4.79 15 24 H 0.18 3.35 8.06 -2.91 -0.02 3.32 15 25 H 0.12 5.00 7.65 -2.91 -0.02 4.98 15 26 H 0.42 11.57 8.88 -92.71 -0.82 10.75 15 27 H 0.18 2.17 8.14 -2.39 -0.02 2.15 15 28 H 0.12 1.76 8.14 -2.38 -0.02 1.75 15 Total: -1.00 -73.78 256.93 2.95 -70.83 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.41 Total: 20.97 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: 2.99 Total: -0.23 kcal Atomic # 7 Polarization: -64.39 SS G_CDS: -1.40 Total: -65.79 kcal Atomic # 8 Polarization: -63.70 SS G_CDS: -1.08 Total: -64.77 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 2.03 Total: 38.99 kcal Total: -73.78 2.95 -70.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036240756.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.963 kcal (2) G-P(sol) polarization free energy of solvation -73.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds