Wall clock time and date at job start Mon Mar 30 2020 03:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 N 1.32766 * 119.99884 * 128.91517 * 3 2 1 5 5 C 1.32690 * 119.99226 * 180.02562 * 4 3 2 6 6 C 1.43208 * 120.00521 * 180.02562 * 5 4 3 7 7 N 5.79112 * 144.37682 * 128.91459 * 2 1 3 8 8 C 1.41042 * 119.99377 * 0.02562 * 5 4 3 9 9 S 1.76197 * 120.00326 * 180.02562 * 8 5 4 10 10 C 1.76203 * 99.99892 * 180.02562 * 9 8 5 11 11 H 1.08002 * 119.99736 * 359.97438 * 10 9 8 12 12 C 1.38856 * 119.99759 * 180.27628 * 10 9 8 13 13 N 1.31494 * 120.00452 * 359.72141 * 12 10 9 14 14 Si 1.86801 * 119.99786 * 179.72079 * 12 10 9 15 15 H 1.48504 * 109.47209 * 90.00046 * 14 12 10 16 16 H 1.48499 * 109.47039 * 209.99996 * 14 12 10 17 17 H 1.48501 * 109.47275 * 329.99796 * 14 12 10 18 18 N 1.32822 * 119.99408 * 0.27412 * 8 5 4 19 19 C 1.32583 * 120.00679 * 359.45082 * 18 8 5 20 20 N 1.38053 * 119.99877 * 180.29801 * 19 18 8 21 21 H 0.97000 * 120.00734 * 180.02562 * 13 12 10 22 22 H 0.96996 * 120.00468 * 180.25553 * 20 19 18 23 23 H 0.97003 * 120.00020 * 0.25230 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2315 0.7232 -0.8946 5 6 4.5584 0.7233 -0.8948 6 6 5.2743 1.5030 -1.8594 7 7 5.8434 2.1188 -2.6245 8 6 5.2637 -0.0446 0.0550 9 16 7.0256 -0.0441 0.0554 10 6 7.3316 -1.1359 1.4041 11 1 6.5042 -1.5726 1.9438 12 6 8.6364 -1.4298 1.7772 13 7 9.6438 -0.8978 1.1205 14 14 8.9607 -2.5811 3.2120 15 1 9.0515 -3.9777 2.7154 16 1 10.2383 -2.2054 3.8691 17 1 7.8502 -2.4755 4.1923 18 7 4.5995 -0.7720 0.9460 19 6 3.2737 -0.7678 0.9496 20 7 2.5836 -1.5191 1.8798 21 1 10.5553 -1.1034 1.3808 22 1 1.6136 -1.5189 1.8801 23 1 3.0687 -2.0472 2.5330 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038917394.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:11 Heat of formation + Delta-G solvation = 86.243612 kcal Electronic energy + Delta-G solvation = -14077.603678 eV Core-core repulsion = 11437.784041 eV Total energy + Delta-G solvation = -2639.819637 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 247.022 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.03096 -38.06475 -37.53138 -36.43889 -34.85724 -34.75531 -31.40551 -27.93930 -26.98008 -25.56093 -21.80084 -20.39683 -19.90632 -18.79816 -18.37599 -17.00271 -16.65970 -16.59656 -16.42056 -14.91204 -14.77831 -14.70752 -14.28010 -14.17894 -14.01460 -13.75809 -13.44655 -13.03920 -12.99097 -12.67172 -12.58689 -12.17307 -12.00817 -11.17563 -10.98231 -10.36274 -9.53959 -8.88711 -8.57452 -6.36647 -0.70972 -0.21256 0.87144 1.23238 1.43357 1.45486 1.56374 1.58511 1.61885 2.00672 2.09262 2.22257 2.52199 2.73083 2.81806 2.93775 3.01487 3.44589 3.77096 4.02218 4.65846 5.45775 5.71316 6.08116 6.20309 6.26052 6.35552 6.43947 6.88186 6.92606 8.50062 Molecular weight = 247.02amu Principal moments of inertia in cm(-1) A = 0.023786 B = 0.007717 C = 0.005839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.867860 B = 3627.336863 C = 4794.356184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C 0.303 3.697 3 C 0.023 3.977 4 N -0.321 5.321 5 C 0.051 3.949 6 C 0.299 3.701 7 N -0.425 5.425 8 C 0.154 3.846 9 S 0.164 5.836 10 C -0.561 4.561 11 H 0.120 0.880 12 C 0.031 3.969 13 N -0.896 5.896 14 Si 1.000 3.000 15 H -0.267 1.267 16 H -0.278 1.278 17 H -0.254 1.254 18 N -0.517 5.517 19 C 0.460 3.540 20 N -0.795 5.795 21 H 0.283 0.717 22 H 0.423 0.577 23 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.959 -3.515 4.388 10.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.100 5.100 2 C -0.014 4.014 3 C -0.135 4.135 4 N -0.036 5.036 5 C -0.105 4.105 6 C -0.017 4.017 7 N -0.104 5.104 8 C -0.102 4.102 9 S 0.419 5.581 10 C -0.708 4.708 11 H 0.137 0.863 12 C -0.177 4.177 13 N -0.530 5.530 14 Si 0.821 3.179 15 H -0.192 1.192 16 H -0.203 1.203 17 H -0.178 1.178 18 N -0.247 5.247 19 C 0.202 3.798 20 N -0.338 5.338 21 H 0.093 0.907 22 H 0.257 0.743 23 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -8.505 -2.005 2.514 9.093 hybrid contribution -0.331 -1.429 1.762 2.292 sum -8.836 -3.435 4.276 10.399 Atomic orbital electron populations 1.81275 1.11190 1.09231 1.08337 1.24319 0.90586 0.93108 0.93339 1.16070 0.86518 1.08956 1.01913 1.67569 1.06618 1.11902 1.17559 1.15900 0.88020 1.06784 0.99811 1.24399 0.92850 0.92396 0.92062 1.81113 1.08505 1.10404 1.10388 1.24856 1.03427 0.91230 0.90686 1.83999 0.87362 1.49779 1.36980 1.23891 0.96785 1.32099 1.18059 0.86258 1.26173 0.94385 0.97155 0.99973 1.69986 1.00503 1.41933 1.40544 0.84907 0.78244 0.77648 0.77113 1.19194 1.20332 1.17804 1.68727 1.05006 1.25321 1.25685 1.19181 0.88695 0.85697 0.86218 1.42115 1.09994 1.48447 1.33221 0.90721 0.74329 0.74217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -11.35 18.54 19.00 0.35 -10.99 14 2 C 0.30 7.79 14.29 88.33 1.26 9.05 14 3 C 0.02 0.64 6.62 40.95 0.27 0.91 14 4 N -0.32 -10.44 10.33 -180.21 -1.86 -12.30 14 5 C 0.05 1.83 6.62 40.95 0.27 2.10 14 6 C 0.30 11.17 14.48 88.34 1.28 12.45 14 7 N -0.43 -16.60 18.53 19.00 0.35 -16.25 14 8 C 0.15 5.88 7.01 85.23 0.60 6.48 14 9 S 0.16 7.33 20.63 -56.49 -1.17 6.17 14 10 C -0.56 -26.55 9.26 67.97 0.63 -25.92 14 11 H 0.12 5.41 6.55 -2.91 -0.02 5.39 14 12 C 0.03 1.47 5.49 84.89 0.47 1.94 14 13 N -0.90 -45.70 13.22 21.65 0.29 -45.41 14 14 Si 1.00 37.01 29.55 68.60 2.03 39.04 14 15 H -0.27 -9.61 7.11 99.48 0.71 -8.91 14 16 H -0.28 -10.15 7.11 99.48 0.71 -9.44 14 17 H -0.25 -8.90 7.11 99.48 0.71 -8.20 14 18 N -0.52 -17.86 8.62 -186.84 -1.61 -19.47 14 19 C 0.46 12.46 7.76 133.81 1.04 13.50 14 20 N -0.79 -14.09 8.96 -54.68 -0.49 -14.58 14 21 H 0.28 13.44 8.31 -92.71 -0.77 12.67 14 22 H 0.42 5.60 7.65 -92.71 -0.71 4.89 14 23 H 0.42 6.39 8.95 -92.71 -0.83 5.56 14 Total: -1.00 -54.83 252.69 3.50 -51.33 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: -0.21 Total: 1.97 kcal Atomic # 6 Polarization: 14.69 SS G_CDS: 5.82 Total: 20.51 kcal Atomic # 7 Polarization: -116.04 SS G_CDS: -2.97 Total: -119.01 kcal Atomic # 14 Polarization: 37.01 SS G_CDS: 2.03 Total: 39.04 kcal Atomic # 16 Polarization: 7.33 SS G_CDS: -1.17 Total: 6.17 kcal Total: -54.83 3.50 -51.33 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038917394.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.576 kcal (2) G-P(sol) polarization free energy of solvation -54.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds