Wall clock time and date at job start Mon Mar 30 2020 03:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99800 * 2 1 4 4 H 1.48499 * 109.47171 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47402 * 300.00576 * 3 2 1 6 6 H 1.48506 * 109.47165 * 60.00520 * 3 2 1 7 7 C 1.37873 * 120.00259 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00274 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99956 * 359.97438 * 7 2 1 10 10 O 1.42094 * 103.00217 * 286.87902 * 9 7 2 11 11 C 1.76199 * 103.00037 * 180.02562 * 9 7 2 12 12 C 1.38476 * 119.95040 * 90.00548 * 11 9 7 13 13 F 1.35105 * 119.97417 * 0.02562 * 12 11 9 14 14 C 1.38331 * 120.05247 * 180.02562 * 12 11 9 15 15 C 1.38885 * 119.95174 * 359.97438 * 14 12 11 16 16 N 1.39659 * 120.05512 * 179.72294 * 15 14 12 17 17 C 1.38894 * 119.89802 * 0.02562 * 15 14 12 18 18 C 1.38336 * 119.95191 * 359.97438 * 17 15 14 19 19 F 1.35096 * 119.97260 * 180.02562 * 18 17 15 20 20 H 0.96997 * 120.00399 * 359.97438 * 1 2 3 21 21 H 1.07995 * 120.02941 * 180.02562 * 14 12 11 22 22 H 0.97002 * 119.99386 * 0.02562 * 16 15 14 23 23 H 0.96999 * 120.00786 * 179.97438 * 16 15 14 24 24 H 1.08009 * 120.01999 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 16 1.1236 -2.7200 -0.0005 10 8 0.6161 -2.7962 1.3245 11 6 2.4123 -3.9216 -0.0005 12 6 2.9178 -4.3932 1.1993 13 9 2.4222 -3.9319 2.3685 14 6 3.9299 -5.3362 1.2018 15 6 4.4387 -5.8104 -0.0004 16 7 5.4645 -6.7582 -0.0004 17 6 3.9301 -5.3360 -1.2026 18 6 2.9180 -4.3930 -1.2003 19 9 2.4227 -3.9317 -2.3695 20 1 -0.4850 0.8400 0.0004 21 1 4.3236 -5.7040 2.1377 22 1 5.8219 -7.0860 0.8397 23 1 5.8191 -7.0892 -0.8404 24 1 4.3246 -5.7032 -2.1387 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042199100.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:56 Heat of formation + Delta-G solvation = -110.185284 kcal Electronic energy + Delta-G solvation = -15668.466540 eV Core-core repulsion = 12537.147169 eV Total energy + Delta-G solvation = -3131.319371 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 247.022 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.46062 -48.13689 -38.59939 -34.06770 -33.57044 -32.75473 -29.82434 -28.48044 -25.71364 -22.48701 -22.25154 -18.18943 -17.79822 -17.49542 -16.42530 -15.63854 -15.35226 -15.22208 -15.05885 -14.61496 -14.53702 -14.48653 -13.44483 -13.06231 -12.48591 -12.13512 -12.06142 -11.57301 -11.45101 -11.16118 -10.72204 -10.56626 -10.22429 -9.97728 -9.00138 -8.42324 -8.29528 -7.62848 -6.95232 -6.26901 -4.75343 1.51240 1.56925 3.15510 3.23089 3.28918 3.63255 3.70302 3.91286 4.23911 4.73511 4.85983 4.88655 5.24376 5.24999 5.52073 5.83576 6.08996 6.11384 6.12788 6.51942 6.63465 7.06405 7.45309 7.54816 7.66565 8.28446 9.14943 10.52451 Molecular weight = 247.02amu Principal moments of inertia in cm(-1) A = 0.030164 B = 0.008418 C = 0.007983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.035660 B = 3325.407502 C = 3506.440052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.120 3.880 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.277 1.277 7 C -0.818 4.818 8 H 0.079 0.921 9 S 1.419 4.581 10 O -0.896 6.896 11 C -0.575 4.575 12 C 0.233 3.767 13 F -0.107 7.107 14 C -0.271 4.271 15 C 0.274 3.726 16 N -0.872 5.872 17 C -0.268 4.268 18 C 0.237 3.763 19 F -0.121 7.121 20 H 0.281 0.719 21 H 0.129 0.871 22 H 0.399 0.601 23 H 0.400 0.600 24 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.843 -10.759 -5.235 14.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.092 4.092 3 Si 0.732 3.268 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.203 1.203 7 C -0.959 4.959 8 H 0.098 0.902 9 S 1.613 4.387 10 O -0.891 6.891 11 C -0.667 4.667 12 C 0.211 3.789 13 F -0.084 7.084 14 C -0.296 4.296 15 C 0.168 3.832 16 N -0.411 5.411 17 C -0.293 4.293 18 C 0.215 3.785 19 F -0.099 7.099 20 H 0.091 0.909 21 H 0.147 0.853 22 H 0.228 0.772 23 H 0.228 0.772 24 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.671 -10.840 -5.203 13.751 hybrid contribution 2.310 1.121 1.756 3.110 sum 8.981 -9.719 -3.448 13.675 Atomic orbital electron populations 1.69845 1.06415 1.29312 1.44429 1.24726 0.94519 0.99814 0.90116 0.86340 0.80551 0.81701 0.78179 1.19184 1.19825 1.20273 1.27513 1.02105 1.05722 1.60513 0.90237 1.68331 0.82559 0.82484 1.05295 1.92842 1.70398 1.85302 1.40541 1.29101 1.22869 1.21484 0.93215 1.16810 0.89997 0.90638 0.81444 1.91650 1.85600 1.86526 1.44670 1.20474 1.04783 1.06670 0.97635 1.16968 0.86683 0.87204 0.92323 1.42393 1.40589 1.47094 1.10987 1.20389 1.04700 1.06673 0.97498 1.16355 0.90915 0.91013 0.80168 1.91521 1.86051 1.87095 1.45253 0.90928 0.85284 0.77232 0.77181 0.84864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.87 13.19 55.43 0.73 -24.14 14 2 C 0.12 3.39 5.46 -17.82 -0.10 3.30 14 3 Si 0.91 21.39 29.54 -169.99 -5.02 16.37 14 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 14 5 H -0.27 -6.04 7.11 56.52 0.40 -5.64 14 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 14 7 C -0.82 -23.32 9.34 30.60 0.29 -23.03 14 8 H 0.08 2.26 7.81 -52.49 -0.41 1.85 14 9 S 1.42 36.68 12.96 -107.50 -1.39 35.29 14 10 O -0.90 -27.94 15.26 -35.23 -0.54 -28.48 14 11 C -0.58 -12.85 5.61 -39.41 -0.22 -13.07 14 12 C 0.23 5.16 7.19 -39.46 -0.28 4.88 14 13 F -0.11 -2.73 14.92 2.25 0.03 -2.70 14 14 C -0.27 -4.69 9.87 -39.31 -0.39 -5.08 14 15 C 0.27 3.99 6.75 -83.81 -0.57 3.42 14 16 N -0.87 -8.32 9.09 32.40 0.29 -8.03 14 17 C -0.27 -4.09 9.87 -39.30 -0.39 -4.48 14 18 C 0.24 4.41 7.25 -39.46 -0.29 4.12 14 19 F -0.12 -2.13 16.73 2.25 0.04 -2.09 14 20 H 0.28 7.37 8.31 -40.82 -0.34 7.03 14 21 H 0.13 1.90 8.06 -52.49 -0.42 1.48 14 22 H 0.40 3.04 8.84 -40.82 -0.36 2.68 14 23 H 0.40 2.83 8.84 -40.82 -0.36 2.47 14 24 H 0.13 1.59 8.06 -52.48 -0.42 1.17 14 LS Contribution 244.27 15.07 3.68 3.68 Total: -1.00 -35.77 244.27 -5.23 -41.00 By element: Atomic # 1 Polarization: 0.14 SS G_CDS: -1.11 Total: -0.97 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: -1.94 Total: -29.94 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 1.03 Total: -32.17 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.54 Total: -28.48 kcal Atomic # 9 Polarization: -4.86 SS G_CDS: 0.07 Total: -4.79 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 36.68 SS G_CDS: -1.39 Total: 35.29 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -35.77 -5.23 -41.00 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042199100.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.182 kcal (2) G-P(sol) polarization free energy of solvation -35.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds