Wall clock time and date at job start Mon Mar 30 2020 03:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00007 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00024 * 3 2 1 6 6 H 1.48499 * 109.47352 * 329.99854 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99880 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99917 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00072 * 179.97438 * 11 10 9 14 14 H 1.09001 * 110.00963 * 59.30287 * 13 11 10 15 15 C 1.53876 * 110.02660 * 297.92555 * 13 11 10 16 16 C 1.54193 * 108.68758 * 193.57717 * 15 13 11 17 17 S 1.82917 * 105.11154 * 27.82999 * 16 15 13 18 18 O 1.42107 * 109.35179 * 244.51899 * 17 16 15 19 19 O 1.42096 * 109.35545 * 111.32086 * 17 16 15 20 20 C 1.55049 * 110.02817 * 180.68240 * 13 11 10 21 21 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 23 23 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 24 24 H 0.97002 * 120.00079 * 0.02562 * 10 9 7 25 25 H 1.09001 * 109.64308 * 313.37449 * 15 13 11 26 26 H 1.08991 * 109.65150 * 73.67427 * 15 13 11 27 27 H 1.09002 * 110.26664 * 268.94056 * 16 15 13 28 28 H 1.08997 * 110.43084 * 146.80782 * 16 15 13 29 29 H 1.09006 * 110.78455 * 279.99314 * 20 13 11 30 30 H 1.08998 * 110.79167 * 43.45336 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 0.0025 12 8 0.5616 -5.1050 0.0017 13 6 2.7334 -6.0287 0.0032 14 1 3.3731 -5.9719 0.8839 15 6 3.5904 -5.9900 -1.2742 16 6 4.3292 -7.3362 -1.4145 17 16 3.2597 -8.5572 -0.5711 18 8 3.9425 -9.0789 0.5607 19 8 2.7039 -9.4414 -1.5346 20 6 1.9713 -7.3789 -0.0134 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5566 0.8903 23 1 0.6248 -2.5571 -0.8896 24 1 3.1569 -3.4353 0.0028 25 1 2.9489 -5.8326 -2.1412 26 1 4.3151 -5.1789 -1.2049 27 1 5.3028 -7.2852 -0.9270 28 1 4.4464 -7.5981 -2.4660 29 1 1.6181 -7.6360 0.9853 30 1 1.1433 -7.3472 -0.7215 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070233810.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:21 Heat of formation + Delta-G solvation = -122.266314 kcal Electronic energy + Delta-G solvation = -15954.174497 eV Core-core repulsion = 13069.251863 eV Total energy + Delta-G solvation = -2884.922634 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.071 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.55572 -37.22353 -36.27691 -35.87728 -34.61927 -32.53720 -30.27258 -27.48423 -25.39827 -23.14620 -22.09517 -19.80095 -19.03302 -17.93108 -17.11894 -16.81256 -15.88376 -15.62534 -15.15474 -14.81013 -14.61827 -13.90160 -13.83235 -13.38026 -12.74066 -12.53935 -12.42434 -12.36071 -12.19382 -12.16723 -11.89077 -11.30487 -11.14267 -10.96835 -10.84254 -10.54892 -10.24671 -9.45202 -8.89475 -8.80799 -8.18385 -6.61029 -4.35930 -0.16503 2.29018 2.94822 3.31577 3.34507 3.35121 3.50089 3.65179 3.87580 4.07821 4.34975 4.38591 4.43899 4.58046 4.70371 5.16936 5.18153 5.30647 5.31288 5.46373 5.66116 5.73522 6.84525 7.07882 7.09625 7.50965 8.14564 8.27439 8.59472 8.73126 9.37917 10.79083 Molecular weight = 247.07amu Principal moments of inertia in cm(-1) A = 0.055938 B = 0.004579 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.435653 B = 6114.062103 C = 6372.239144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 1.079 2.921 4 H -0.286 1.286 5 H -0.287 1.287 6 H -0.282 1.282 7 C -0.626 4.626 8 H 0.058 0.942 9 C 0.238 3.762 10 N -0.702 5.702 11 C 0.512 3.488 12 O -0.547 6.547 13 C -0.114 4.114 14 H 0.118 0.882 15 C -0.107 4.107 16 C -0.590 4.590 17 S 2.389 3.611 18 O -0.939 6.939 19 O -0.940 6.940 20 C -0.562 4.562 21 H 0.273 0.727 22 H 0.018 0.982 23 H 0.019 0.981 24 H 0.394 0.606 25 H 0.092 0.908 26 H 0.101 0.899 27 H 0.139 0.861 28 H 0.140 0.860 29 H 0.142 0.858 30 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.105 -12.468 -2.005 16.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.182 4.182 3 Si 0.906 3.094 4 H -0.212 1.212 5 H -0.213 1.213 6 H -0.207 1.207 7 C -0.664 4.664 8 H 0.076 0.924 9 C 0.117 3.883 10 N -0.350 5.350 11 C 0.295 3.705 12 O -0.425 6.425 13 C -0.137 4.137 14 H 0.136 0.864 15 C -0.146 4.146 16 C -0.720 4.720 17 S 2.572 3.428 18 O -0.936 6.936 19 O -0.937 6.937 20 C -0.692 4.692 21 H 0.083 0.917 22 H 0.036 0.964 23 H 0.037 0.963 24 H 0.228 0.772 25 H 0.110 0.890 26 H 0.119 0.881 27 H 0.157 0.843 28 H 0.158 0.842 29 H 0.160 0.840 30 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 9.128 -11.950 -1.902 15.157 hybrid contribution 0.608 -0.702 -0.041 0.929 sum 9.736 -12.651 -1.944 16.082 Atomic orbital electron populations 1.70742 1.06907 1.31096 1.44731 1.25888 0.96391 1.02793 0.93172 0.83403 0.74500 0.74577 0.76938 1.21218 1.21346 1.20741 1.22063 0.94589 0.91401 1.58342 0.92367 1.19234 0.88996 0.83432 0.96663 1.46294 1.11258 1.05623 1.71856 1.19866 0.88903 0.83906 0.77842 1.90680 1.16504 1.84658 1.50686 1.22053 0.97099 0.93682 1.00885 0.86432 1.21896 0.98700 0.96265 0.97742 1.30493 1.14050 1.12714 1.14698 1.09061 0.79027 0.78103 0.76568 1.93620 1.72667 1.77210 1.50102 1.93613 1.77463 1.61335 1.61268 1.30546 1.15363 1.09339 1.13976 0.91663 0.96367 0.96323 0.77234 0.88972 0.88062 0.84313 0.84153 0.84001 0.83336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.47 13.65 55.43 0.76 -25.72 16 2 C 0.02 0.64 5.46 -17.82 -0.10 0.55 16 3 Si 1.08 23.57 29.90 -169.99 -5.08 18.49 16 4 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.29 -5.88 7.11 56.52 0.40 -5.47 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.63 -16.38 9.28 -34.44 -0.32 -16.70 16 8 H 0.06 1.43 7.60 -52.49 -0.40 1.04 16 9 C 0.24 5.92 4.74 -5.19 -0.02 5.89 16 10 N -0.70 -13.36 5.48 -61.47 -0.34 -13.70 16 11 C 0.51 8.97 7.14 -10.98 -0.08 8.89 16 12 O -0.55 -11.89 15.79 5.56 0.09 -11.80 16 13 C -0.11 -1.29 2.96 -90.23 -0.27 -1.56 16 14 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 15 C -0.11 -0.93 5.68 -25.65 -0.15 -1.08 16 16 C -0.59 -3.96 7.26 37.78 0.27 -3.69 16 17 S 2.39 22.64 6.11 -107.50 -0.66 21.98 16 18 O -0.94 -11.74 18.15 -57.71 -1.05 -12.78 16 19 O -0.94 -12.22 18.14 -57.71 -1.05 -13.26 16 20 C -0.56 -5.94 6.20 38.24 0.24 -5.70 16 21 H 0.27 8.11 7.22 -40.82 -0.29 7.81 16 22 H 0.02 0.50 8.01 -51.93 -0.42 0.09 16 23 H 0.02 0.51 8.01 -51.93 -0.42 0.09 16 24 H 0.39 6.27 8.30 -40.82 -0.34 5.93 16 25 H 0.09 0.84 8.09 -51.93 -0.42 0.42 16 26 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.14 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.14 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.14 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.15 1.69 7.64 -51.93 -0.40 1.29 16 LS Contribution 272.84 15.07 4.11 4.11 Total: -1.00 -36.60 272.84 -7.23 -43.83 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -3.59 Total: 2.25 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -0.42 Total: -13.40 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.42 Total: -39.42 kcal Atomic # 8 Polarization: -35.84 SS G_CDS: -2.01 Total: -37.85 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -5.08 Total: 18.49 kcal Atomic # 16 Polarization: 22.64 SS G_CDS: -0.66 Total: 21.98 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -36.60 -7.23 -43.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070233810.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.438 kcal (2) G-P(sol) polarization free energy of solvation -36.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds