Wall clock time and date at job start Mon Mar 30 2020 03:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00007 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00024 * 3 2 1 6 6 H 1.48499 * 109.47352 * 329.99854 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99880 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99917 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00072 * 179.97438 * 11 10 9 14 14 H 1.09001 * 110.00963 * 59.30287 * 13 11 10 15 15 C 1.53876 * 110.02660 * 297.92555 * 13 11 10 16 16 C 1.54193 * 108.68758 * 193.57717 * 15 13 11 17 17 S 1.82917 * 105.11154 * 27.82999 * 16 15 13 18 18 O 1.42107 * 109.35179 * 244.51899 * 17 16 15 19 19 O 1.42096 * 109.35545 * 111.32086 * 17 16 15 20 20 C 1.55049 * 110.02817 * 180.68240 * 13 11 10 21 21 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 23 23 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 24 24 H 0.97002 * 120.00079 * 0.02562 * 10 9 7 25 25 H 1.09001 * 109.64308 * 313.37449 * 15 13 11 26 26 H 1.08991 * 109.65150 * 73.67427 * 15 13 11 27 27 H 1.09002 * 110.26664 * 268.94056 * 16 15 13 28 28 H 1.08997 * 110.43084 * 146.80782 * 16 15 13 29 29 H 1.09006 * 110.78455 * 279.99314 * 20 13 11 30 30 H 1.08998 * 110.79167 * 43.45336 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 0.0025 12 8 0.5616 -5.1050 0.0017 13 6 2.7334 -6.0287 0.0032 14 1 3.3731 -5.9719 0.8839 15 6 3.5904 -5.9900 -1.2742 16 6 4.3292 -7.3362 -1.4145 17 16 3.2597 -8.5572 -0.5711 18 8 3.9425 -9.0789 0.5607 19 8 2.7039 -9.4414 -1.5346 20 6 1.9713 -7.3789 -0.0134 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5566 0.8903 23 1 0.6248 -2.5571 -0.8896 24 1 3.1569 -3.4353 0.0028 25 1 2.9489 -5.8326 -2.1412 26 1 4.3151 -5.1789 -1.2049 27 1 5.3028 -7.2852 -0.9270 28 1 4.4464 -7.5981 -2.4660 29 1 1.6181 -7.6360 0.9853 30 1 1.1433 -7.3472 -0.7215 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070233810.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:21 Heat of formation + Delta-G solvation = -153.163607 kcal Electronic energy + Delta-G solvation = -15955.514304 eV Core-core repulsion = 13069.251863 eV Total energy + Delta-G solvation = -2886.262441 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.071 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.97096 -38.12006 -37.20875 -36.87541 -36.42350 -34.43997 -31.06497 -29.21706 -26.62054 -24.77479 -23.32632 -21.21527 -19.83660 -19.47616 -18.37836 -17.85955 -17.01848 -16.70714 -16.53597 -16.11037 -15.60447 -15.37832 -14.97440 -14.87272 -14.38309 -14.05586 -13.57797 -13.28429 -13.22719 -13.11498 -13.08935 -12.86183 -12.56190 -12.08490 -11.88754 -11.85195 -11.31666 -11.05171 -10.81764 -10.76897 -10.00841 -8.78882 -6.55048 -0.93908 1.51173 1.56999 1.58119 1.66182 1.82722 2.32074 2.57493 2.58665 3.05527 3.09058 3.20745 3.55707 3.62989 3.83472 3.99412 4.11640 4.48767 4.68591 4.78667 4.84088 4.93271 4.95343 4.98877 5.39978 5.54024 6.07967 6.31758 6.74076 7.20779 7.37928 8.60569 Molecular weight = 247.07amu Principal moments of inertia in cm(-1) A = 0.055938 B = 0.004579 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.435653 B = 6114.062103 C = 6372.239144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.033 4.033 3 Si 1.131 2.869 4 H -0.273 1.273 5 H -0.258 1.258 6 H -0.288 1.288 7 C -0.627 4.627 8 H 0.080 0.920 9 C 0.249 3.751 10 N -0.698 5.698 11 C 0.509 3.491 12 O -0.596 6.596 13 C -0.106 4.106 14 H 0.153 0.847 15 C -0.111 4.111 16 C -0.556 4.556 17 S 2.412 3.588 18 O -0.967 6.967 19 O -0.978 6.978 20 C -0.574 4.574 21 H 0.254 0.746 22 H -0.017 1.017 23 H -0.014 1.014 24 H 0.413 0.587 25 H 0.086 0.914 26 H 0.127 0.873 27 H 0.172 0.828 28 H 0.165 0.835 29 H 0.144 0.856 30 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.643 -12.272 -2.407 18.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.231 4.231 3 Si 0.950 3.050 4 H -0.198 1.198 5 H -0.182 1.182 6 H -0.214 1.214 7 C -0.665 4.665 8 H 0.098 0.902 9 C 0.126 3.874 10 N -0.347 5.347 11 C 0.295 3.705 12 O -0.478 6.478 13 C -0.129 4.129 14 H 0.170 0.830 15 C -0.150 4.150 16 C -0.689 4.689 17 S 2.599 3.401 18 O -0.964 6.964 19 O -0.975 6.975 20 C -0.703 4.703 21 H 0.063 0.937 22 H 0.001 0.999 23 H 0.004 0.996 24 H 0.250 0.750 25 H 0.105 0.895 26 H 0.145 0.855 27 H 0.190 0.810 28 H 0.183 0.817 29 H 0.162 0.838 30 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 12.689 -11.820 -2.284 17.491 hybrid contribution -0.509 -0.809 0.073 0.959 sum 12.179 -12.629 -2.211 17.684 Atomic orbital electron populations 1.70889 1.08396 1.29967 1.47587 1.27596 0.96296 1.07193 0.92036 0.82771 0.74269 0.70070 0.77840 1.19818 1.18169 1.21402 1.22452 0.95711 0.91583 1.56743 0.90208 1.18717 0.89481 0.85668 0.93547 1.46018 1.11278 1.05002 1.72431 1.20938 0.89406 0.84569 0.75607 1.90661 1.19331 1.85406 1.52352 1.22120 0.96167 0.90447 1.04137 0.82980 1.21995 0.98911 0.98278 0.95780 1.30316 1.13780 1.08861 1.15919 1.08306 0.78353 0.77894 0.75570 1.93579 1.72783 1.78364 1.51711 1.93562 1.78586 1.63403 1.61943 1.30630 1.15901 1.09736 1.14049 0.93684 0.99927 0.99620 0.74998 0.89533 0.85487 0.80990 0.81695 0.83829 0.84772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.39 13.65 21.45 0.29 -56.09 16 2 C -0.03 -1.77 5.46 84.65 0.46 -1.31 16 3 Si 1.13 46.08 29.90 68.60 2.05 48.13 16 4 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 5 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 6 H -0.29 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.63 -32.56 9.28 25.60 0.24 -32.32 16 8 H 0.08 3.72 7.60 -2.91 -0.02 3.70 16 9 C 0.25 12.78 4.74 85.63 0.41 13.19 16 10 N -0.70 -26.11 5.48 -466.78 -2.56 -28.67 16 11 C 0.51 17.69 7.14 87.66 0.63 18.32 16 12 O -0.60 -26.96 15.79 -3.04 -0.05 -27.01 16 13 C -0.11 -2.16 2.96 -10.54 -0.03 -2.19 16 14 H 0.15 2.09 8.14 -2.39 -0.02 2.07 16 15 C -0.11 -1.48 5.68 31.29 0.18 -1.31 16 16 C -0.56 -4.77 7.26 72.39 0.53 -4.24 16 17 S 2.41 40.93 6.11 -56.49 -0.34 40.58 16 18 O -0.97 -22.22 18.15 -127.49 -2.31 -24.53 16 19 O -0.98 -24.48 18.14 -127.49 -2.31 -26.79 16 20 C -0.57 -11.73 6.20 72.68 0.45 -11.28 16 21 H 0.25 15.93 7.22 -92.70 -0.67 15.26 16 22 H -0.02 -0.99 8.01 -2.39 -0.02 -1.01 16 23 H -0.01 -0.80 8.01 -2.39 -0.02 -0.82 16 24 H 0.41 12.10 8.30 -92.71 -0.77 11.33 16 25 H 0.09 1.32 8.09 -2.39 -0.02 1.30 16 26 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.17 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.17 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.14 2.80 8.14 -2.38 -0.02 2.78 16 30 H 0.13 3.16 7.64 -2.39 -0.02 3.14 16 Total: -1.00 -82.92 272.84 -1.90 -84.81 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 0.49 Total: 10.72 kcal Atomic # 6 Polarization: -24.01 SS G_CDS: 2.85 Total: -21.15 kcal Atomic # 7 Polarization: -82.49 SS G_CDS: -2.27 Total: -84.76 kcal Atomic # 8 Polarization: -73.66 SS G_CDS: -4.67 Total: -78.33 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.05 Total: 48.13 kcal Atomic # 16 Polarization: 40.93 SS G_CDS: -0.34 Total: 40.58 kcal Total: -82.92 -1.90 -84.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070233810.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.352 kcal (2) G-P(sol) polarization free energy of solvation -82.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds