Wall clock time and date at job start Mon Mar 30 2020 03:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 S 1.71006 * 125.57344 * 2 1 4 4 C 1.75911 * 90.76322 * 180.02562 * 3 2 1 5 5 C 1.47817 * 125.06303 * 179.97438 * 4 3 2 6 6 C 1.39941 * 120.57601 * 0.02562 * 5 4 3 7 7 C 1.38352 * 118.26543 * 180.02562 * 6 5 4 8 8 N 1.32424 * 119.19956 * 0.02562 * 7 6 5 9 9 C 1.31851 * 121.09981 * 359.97438 * 8 7 6 10 10 N 1.31616 * 121.91454 * 0.02562 * 9 8 7 11 11 N 1.29816 * 109.87182 * 0.22998 * 4 3 2 12 12 C 1.32600 * 116.05488 * 359.58256 * 11 4 3 13 13 C 1.41202 * 122.77427 * 180.18519 * 12 11 4 14 14 H 1.08005 * 119.99772 * 180.27177 * 13 12 11 15 15 C 1.39707 * 119.99854 * 0.27251 * 13 12 11 16 16 N 1.31013 * 119.99652 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99974 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47306 * 59.99839 * 17 15 13 19 19 H 1.48496 * 109.47277 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46971 * 300.00113 * 17 15 13 21 21 H 1.09004 * 109.47102 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47285 * 119.97319 * 1 2 3 23 23 H 1.08999 * 109.47300 * 239.97488 * 1 2 3 24 24 H 1.08000 * 120.86539 * 0.02562 * 6 5 4 25 25 H 1.07997 * 120.39653 * 180.02562 * 7 6 5 26 26 H 1.08007 * 119.04233 * 180.02562 * 9 8 7 27 27 H 0.97000 * 119.99491 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.5018 1.3909 0.0000 4 6 3.9461 0.3867 -0.0008 5 6 5.3340 0.8953 -0.0017 6 6 5.5878 2.2715 -0.0015 7 6 6.9049 2.6948 -0.0029 8 7 7.8737 1.7920 -0.0049 9 6 7.6021 0.5017 -0.0051 10 7 6.3656 0.0509 -0.0038 11 7 3.6114 -0.8676 -0.0059 12 6 2.3103 -1.1233 -0.0006 13 6 1.7892 -2.4356 -0.0013 14 1 0.7206 -2.5923 -0.0013 15 6 2.6560 -3.5313 -0.0019 16 7 3.9522 -3.3411 -0.0024 17 14 1.9666 -5.2674 -0.0034 18 1 1.1336 -5.4683 -1.2163 19 1 3.0852 -6.2442 -0.0033 20 1 1.1330 -5.4701 1.2087 21 1 -0.3633 1.0277 0.0005 22 1 -0.3634 -0.5134 -0.8902 23 1 -0.3634 -0.5142 0.8897 24 1 4.7766 2.9845 -0.0002 25 1 7.1402 3.7489 -0.0023 26 1 8.4182 -0.2058 -0.0064 27 1 4.5540 -4.1019 -0.0024 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074113581.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:28 Heat of formation + Delta-G solvation = 84.908066 kcal Electronic energy + Delta-G solvation = -14779.872124 eV Core-core repulsion = 12243.534916 eV Total energy + Delta-G solvation = -2536.337207 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 247.047 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.48839 -37.97737 -33.86893 -32.97028 -32.11355 -30.87377 -27.58746 -25.49790 -24.09576 -23.35348 -21.70350 -19.26916 -17.61147 -16.78059 -16.07255 -15.47456 -15.17854 -14.94126 -14.51717 -13.77324 -13.31725 -13.23641 -12.87287 -11.97721 -11.85794 -11.60943 -11.41476 -11.25779 -10.65593 -10.61654 -10.46967 -10.38916 -9.62735 -9.59211 -9.20047 -8.86119 -8.16119 -7.96447 -7.34796 -6.55479 -4.41163 0.87792 1.31942 2.37919 2.52874 3.06081 3.08230 3.10160 3.38149 3.96391 4.05361 4.41721 4.41801 4.48422 4.70829 5.30210 5.33260 5.42035 5.77742 5.80042 6.24157 6.42009 6.57522 6.59590 6.76692 6.98172 7.15737 7.32223 7.41841 8.10547 8.43378 8.46270 8.80184 9.46431 10.29660 Molecular weight = 247.05amu Principal moments of inertia in cm(-1) A = 0.023894 B = 0.008155 C = 0.006100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.557046 B = 3432.449879 C = 4588.862807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 C -0.408 4.408 3 S 0.015 5.985 4 C 0.044 3.956 5 C 0.276 3.724 6 C -0.223 4.223 7 C 0.146 3.854 8 N -0.538 5.538 9 C 0.293 3.707 10 N -0.478 5.478 11 N -0.340 5.340 12 C 0.216 3.784 13 C -0.422 4.422 14 H 0.088 0.912 15 C 0.067 3.933 16 N -0.734 5.734 17 Si 0.911 3.089 18 H -0.265 1.265 19 H -0.278 1.278 20 H -0.265 1.265 21 H 0.037 0.963 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.146 0.854 25 H 0.166 0.834 26 H 0.194 0.806 27 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.055 7.018 0.007 7.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.530 4.530 3 S 0.264 5.736 4 C -0.233 4.233 5 C 0.127 3.873 6 C -0.248 4.248 7 C -0.020 4.020 8 N -0.253 5.253 9 C 0.004 3.996 10 N -0.193 5.193 11 N -0.055 5.055 12 C 0.091 3.909 13 C -0.455 4.455 14 H 0.106 0.894 15 C -0.157 4.157 16 N -0.356 5.356 17 Si 0.736 3.264 18 H -0.190 1.190 19 H -0.202 1.202 20 H -0.190 1.190 21 H 0.056 0.944 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.164 0.836 25 H 0.184 0.816 26 H 0.211 0.789 27 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.263 6.852 -0.002 7.589 hybrid contribution -1.273 -1.131 0.005 1.703 sum 1.990 5.721 0.002 6.057 Atomic orbital electron populations 1.19478 0.89321 0.98955 1.00398 1.24384 0.99442 0.93378 1.35844 1.82357 1.00717 1.13804 1.76700 1.25133 0.93508 0.92366 1.12340 1.19260 0.90504 0.88777 0.88719 1.22813 0.99688 0.96721 1.05536 1.22982 0.88008 0.99798 0.91167 1.68340 1.37853 1.03714 1.15430 1.25008 0.93252 0.90366 0.90995 1.68686 0.99241 1.39441 1.11900 1.67386 1.17660 1.13247 1.07238 1.17821 0.84100 0.94088 0.94903 1.18966 0.94405 0.87833 1.44341 0.89426 1.26043 0.94753 1.01451 0.93460 1.70124 1.02584 1.32703 1.30215 0.86317 0.79318 0.80970 0.79822 1.18966 1.20248 1.18971 0.94358 0.93296 0.93291 0.83625 0.81649 0.78919 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.45 9.57 36.00 0.34 -0.10 15 2 C -0.41 -9.82 6.48 -34.36 -0.22 -10.04 15 3 S 0.01 0.31 22.14 -107.50 -2.38 -2.07 15 4 C 0.04 1.05 7.39 -14.49 -0.11 0.94 15 5 C 0.28 5.73 6.79 -82.67 -0.56 5.17 15 6 C -0.22 -3.58 9.71 -38.90 -0.38 -3.96 15 7 C 0.15 2.02 11.30 -17.25 -0.19 1.82 15 8 N -0.54 -8.40 10.42 -14.65 -0.15 -8.56 15 9 C 0.29 4.95 12.28 -92.26 -1.13 3.81 15 10 N -0.48 -10.09 10.37 -11.18 -0.12 -10.21 15 11 N -0.34 -9.35 8.39 -9.16 -0.08 -9.43 15 12 C 0.22 5.88 6.46 -86.46 -0.56 5.32 15 13 C -0.42 -11.31 8.98 -37.91 -0.34 -11.65 15 14 H 0.09 2.20 7.36 -52.48 -0.39 1.81 15 15 C 0.07 1.73 5.49 -17.35 -0.10 1.63 15 16 N -0.73 -20.00 11.69 55.54 0.65 -19.35 15 17 Si 0.91 18.94 29.56 -169.99 -5.02 13.92 15 18 H -0.27 -5.41 7.11 56.52 0.40 -5.01 15 19 H -0.28 -5.65 7.11 56.52 0.40 -5.25 15 20 H -0.27 -5.41 7.11 56.52 0.40 -5.01 15 21 H 0.04 0.67 8.14 -51.93 -0.42 0.25 15 22 H 0.05 0.96 8.14 -51.93 -0.42 0.54 15 23 H 0.05 0.96 8.14 -51.93 -0.42 0.54 15 24 H 0.15 2.01 7.38 -52.49 -0.39 1.62 15 25 H 0.17 1.56 8.06 -52.49 -0.42 1.14 15 26 H 0.19 2.59 8.06 -52.48 -0.42 2.17 15 27 H 0.28 6.94 8.30 -40.82 -0.34 6.60 15 LS Contribution 261.90 15.07 3.95 3.95 Total: -1.00 -30.96 261.90 -8.42 -39.38 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -2.02 Total: -0.59 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -3.25 Total: -7.05 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: 0.30 Total: -47.55 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.92 kcal Atomic # 16 Polarization: 0.31 SS G_CDS: -2.38 Total: -2.07 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.96 -8.42 -39.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074113581.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.291 kcal (2) G-P(sol) polarization free energy of solvation -30.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds