Wall clock time and date at job start Mon Mar 30 2020 03:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 S 1.71006 * 125.57344 * 2 1 4 4 C 1.75911 * 90.76322 * 180.02562 * 3 2 1 5 5 C 1.47817 * 125.06303 * 179.97438 * 4 3 2 6 6 C 1.39941 * 120.57601 * 0.02562 * 5 4 3 7 7 C 1.38352 * 118.26543 * 180.02562 * 6 5 4 8 8 N 1.32424 * 119.19956 * 0.02562 * 7 6 5 9 9 C 1.31851 * 121.09981 * 359.97438 * 8 7 6 10 10 N 1.31616 * 121.91454 * 0.02562 * 9 8 7 11 11 N 1.29816 * 109.87182 * 0.22998 * 4 3 2 12 12 C 1.32600 * 116.05488 * 359.58256 * 11 4 3 13 13 C 1.41202 * 122.77427 * 180.18519 * 12 11 4 14 14 H 1.08005 * 119.99772 * 180.27177 * 13 12 11 15 15 C 1.39707 * 119.99854 * 0.27251 * 13 12 11 16 16 N 1.31013 * 119.99652 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99974 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47306 * 59.99839 * 17 15 13 19 19 H 1.48496 * 109.47277 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46971 * 300.00113 * 17 15 13 21 21 H 1.09004 * 109.47102 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47285 * 119.97319 * 1 2 3 23 23 H 1.08999 * 109.47300 * 239.97488 * 1 2 3 24 24 H 1.08000 * 120.86539 * 0.02562 * 6 5 4 25 25 H 1.07997 * 120.39653 * 180.02562 * 7 6 5 26 26 H 1.08007 * 119.04233 * 180.02562 * 9 8 7 27 27 H 0.97000 * 119.99491 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.5018 1.3909 0.0000 4 6 3.9461 0.3867 -0.0008 5 6 5.3340 0.8953 -0.0017 6 6 5.5878 2.2715 -0.0015 7 6 6.9049 2.6948 -0.0029 8 7 7.8737 1.7920 -0.0049 9 6 7.6021 0.5017 -0.0051 10 7 6.3656 0.0509 -0.0038 11 7 3.6114 -0.8676 -0.0059 12 6 2.3103 -1.1233 -0.0006 13 6 1.7892 -2.4356 -0.0013 14 1 0.7206 -2.5923 -0.0013 15 6 2.6560 -3.5313 -0.0019 16 7 3.9522 -3.3411 -0.0024 17 14 1.9666 -5.2674 -0.0034 18 1 1.1336 -5.4683 -1.2163 19 1 3.0852 -6.2442 -0.0033 20 1 1.1330 -5.4701 1.2087 21 1 -0.3633 1.0277 0.0005 22 1 -0.3634 -0.5134 -0.8902 23 1 -0.3634 -0.5142 0.8897 24 1 4.7766 2.9845 -0.0002 25 1 7.1402 3.7489 -0.0023 26 1 8.4182 -0.2058 -0.0064 27 1 4.5540 -4.1019 -0.0024 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074113581.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:28 Heat of formation + Delta-G solvation = 65.130039 kcal Electronic energy + Delta-G solvation = -14780.729763 eV Core-core repulsion = 12243.534916 eV Total energy + Delta-G solvation = -2537.194847 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 247.047 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.82078 -39.79927 -35.47507 -34.62393 -33.54942 -32.49214 -29.38361 -27.11150 -25.50899 -24.96462 -23.32479 -21.02332 -19.21901 -18.29513 -17.60324 -17.24137 -16.69837 -16.41368 -15.95052 -15.35473 -14.96482 -14.64296 -14.41418 -13.63166 -13.50216 -13.36977 -13.13062 -12.91981 -12.47382 -12.24368 -11.85757 -11.84558 -11.39464 -11.18959 -10.74696 -10.22719 -9.93819 -9.72609 -9.16372 -8.40614 -6.35247 -0.62601 0.08044 0.71284 0.79768 1.36648 1.42997 1.49456 1.56339 2.23234 2.35360 2.92075 3.02739 3.27042 3.45822 3.49543 3.95281 4.12348 4.45984 4.59303 4.64819 4.77039 4.95914 4.99665 5.27932 5.35485 5.40752 5.57616 6.01625 6.17930 6.55364 6.88170 7.14212 7.66766 8.46152 Molecular weight = 247.05amu Principal moments of inertia in cm(-1) A = 0.023894 B = 0.008155 C = 0.006100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.557046 B = 3432.449879 C = 4588.862807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 C -0.426 4.426 3 S 0.098 5.902 4 C 0.027 3.973 5 C 0.235 3.765 6 C -0.210 4.210 7 C 0.163 3.837 8 N -0.533 5.533 9 C 0.289 3.711 10 N -0.526 5.526 11 N -0.397 5.397 12 C 0.179 3.821 13 C -0.463 4.463 14 H 0.092 0.908 15 C 0.022 3.978 16 N -0.780 5.780 17 Si 0.987 3.013 18 H -0.258 1.258 19 H -0.273 1.273 20 H -0.258 1.258 21 H 0.065 0.935 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.170 0.830 25 H 0.222 0.778 26 H 0.218 0.782 27 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.069 9.135 0.009 9.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.549 4.549 3 S 0.348 5.652 4 C -0.250 4.250 5 C 0.088 3.912 6 C -0.234 4.234 7 C -0.003 4.003 8 N -0.248 5.248 9 C 0.000 4.000 10 N -0.242 5.242 11 N -0.113 5.113 12 C 0.054 3.946 13 C -0.497 4.497 14 H 0.110 0.890 15 C -0.197 4.197 16 N -0.404 5.404 17 Si 0.807 3.193 18 H -0.182 1.182 19 H -0.197 1.197 20 H -0.182 1.182 21 H 0.084 0.916 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.188 0.812 25 H 0.238 0.762 26 H 0.234 0.766 27 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.257 8.999 -0.001 9.570 hybrid contribution -1.206 -1.475 0.004 1.905 sum 2.051 7.524 0.003 7.798 Atomic orbital electron populations 1.19559 0.86992 1.00819 1.00669 1.25146 1.01689 0.94475 1.33596 1.81759 0.97869 1.10809 1.74713 1.25893 0.96062 0.92406 1.10670 1.19406 0.89317 0.90794 0.91692 1.23068 1.01627 0.94715 1.04011 1.23877 0.86543 1.01806 0.88066 1.68482 1.38223 1.03330 1.14754 1.25474 0.92530 0.91596 0.90359 1.68574 1.00724 1.41272 1.13603 1.67371 1.18134 1.15442 1.10326 1.18294 0.84970 0.95387 0.95976 1.19285 0.94869 0.88852 1.46680 0.89036 1.26949 0.94789 1.05572 0.92413 1.70277 1.04001 1.33709 1.32396 0.85187 0.78585 0.75405 0.80076 1.18215 1.19729 1.18217 0.91573 0.93019 0.93008 0.81244 0.76184 0.76600 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.83 9.57 71.23 0.68 -0.15 15 2 C -0.43 -20.51 6.48 25.65 0.17 -20.35 15 3 S 0.10 3.98 22.14 -56.49 -1.25 2.73 15 4 C 0.03 1.30 7.39 87.53 0.65 1.94 15 5 C 0.23 9.72 6.79 41.87 0.28 10.00 15 6 C -0.21 -6.16 9.71 22.71 0.22 -5.94 15 7 C 0.16 3.85 11.30 84.63 0.96 4.81 15 8 N -0.53 -15.15 10.42 -200.26 -2.09 -17.24 15 9 C 0.29 9.51 12.28 180.92 2.22 11.73 15 10 N -0.53 -22.56 10.37 -189.27 -1.96 -24.52 15 11 N -0.40 -22.71 8.39 -182.88 -1.53 -24.25 15 12 C 0.18 10.10 6.46 39.72 0.26 10.35 15 13 C -0.46 -25.84 8.98 23.35 0.21 -25.63 15 14 H 0.09 4.76 7.36 -2.91 -0.02 4.74 15 15 C 0.02 1.18 5.49 85.17 0.47 1.65 15 16 N -0.78 -44.79 11.69 21.79 0.25 -44.54 15 17 Si 0.99 40.14 29.56 68.60 2.03 42.16 15 18 H -0.26 -10.05 7.11 99.48 0.71 -9.34 15 19 H -0.27 -10.69 7.11 99.48 0.71 -9.98 15 20 H -0.26 -10.05 7.11 99.48 0.71 -9.34 15 21 H 0.07 2.18 8.14 -2.39 -0.02 2.16 15 22 H 0.05 1.99 8.14 -2.39 -0.02 1.97 15 23 H 0.05 1.99 8.14 -2.39 -0.02 1.97 15 24 H 0.17 4.02 7.38 -2.91 -0.02 4.00 15 25 H 0.22 2.75 8.06 -2.91 -0.02 2.72 15 26 H 0.22 5.67 8.06 -2.91 -0.02 5.65 15 27 H 0.28 14.68 8.30 -92.71 -0.77 13.91 15 Total: -1.00 -71.54 261.90 2.76 -68.78 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: 1.20 Total: 8.45 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: 6.11 Total: -11.57 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -5.33 Total: -110.55 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.16 kcal Atomic # 16 Polarization: 3.98 SS G_CDS: -1.25 Total: 2.73 kcal Total: -71.54 2.76 -68.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074113581.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.911 kcal (2) G-P(sol) polarization free energy of solvation -71.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds