Wall clock time and date at job start Mon Mar 30 2020 03:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30582 * 1 3 3 Si 1.86806 * 120.00025 * 2 1 4 4 H 1.48506 * 109.46914 * 240.00182 * 3 2 1 5 5 H 1.48493 * 109.47105 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46846 * 120.00052 * 3 2 1 7 7 C 1.40380 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99987 * 180.02562 * 7 2 1 9 9 C 1.39762 * 119.99955 * 359.97438 * 7 2 1 10 10 N 1.32485 * 125.12647 * 0.04675 * 9 7 2 11 11 C 1.34051 * 108.93644 * 179.97438 * 10 9 7 12 12 C 1.40425 * 133.46905 * 179.97438 * 11 10 9 13 13 C 1.36795 * 120.00117 * 180.02562 * 12 11 10 14 14 C 1.40059 * 120.35797 * 359.82666 * 13 12 11 15 15 C 1.38818 * 120.31465 * 0.23411 * 14 13 12 16 16 C 1.38236 * 119.99218 * 359.85967 * 15 14 13 17 17 O 1.35112 * 125.12699 * 180.02562 * 9 7 2 18 18 O 1.35985 * 120.62358 * 180.31321 * 14 13 12 19 19 C 1.43134 * 116.74434 * 342.61827 * 18 14 13 20 20 C 1.53457 * 108.28670 * 46.45471 * 19 18 14 21 21 O 1.36203 * 119.03670 * 179.67843 * 13 12 11 22 22 H 0.97007 * 119.99762 * 0.02562 * 1 2 3 23 23 H 1.08000 * 120.00624 * 359.77973 * 12 11 10 24 24 H 1.07991 * 119.99938 * 179.88532 * 15 14 13 25 25 H 1.08999 * 109.70073 * 166.14895 * 19 18 14 26 26 H 1.09001 * 109.70247 * 286.75465 * 19 18 14 27 27 H 1.09000 * 109.70357 * 59.63420 * 20 19 18 28 28 H 1.08992 * 109.70738 * 180.25500 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2399 1.6178 0.0000 4 1 3.0936 1.6964 -1.2126 5 1 1.2749 2.7465 -0.0006 6 1 3.0936 1.6964 1.2125 7 6 2.0077 -1.2157 -0.0005 8 1 3.0877 -1.2157 -0.0001 9 6 1.3089 -2.4261 -0.0005 10 7 -0.0107 -2.5445 -0.0009 11 6 -0.3307 -3.8462 -0.0014 12 6 -1.5509 -4.5411 -0.0014 13 6 -1.5591 -5.9090 -0.0014 14 6 -0.3548 -6.6241 -0.0050 15 6 0.8595 -5.9514 -0.0037 16 6 0.8838 -4.5693 -0.0018 17 8 1.8772 -3.6519 -0.0005 18 8 -0.3567 -7.9839 -0.0114 19 6 -1.5773 -8.6282 0.3677 20 6 -2.7335 -7.9434 -0.3734 21 8 -2.7539 -6.5630 0.0052 22 1 -0.4850 0.8401 -0.0004 23 1 -2.4831 -3.9956 0.0025 24 1 1.7850 -6.5079 -0.0046 25 1 -1.5375 -9.6821 0.0923 26 1 -1.7237 -8.5342 1.4437 27 1 -2.5811 -8.0271 -1.4495 28 1 -3.6770 -8.4141 -0.0975 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074114497.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:45 Heat of formation + Delta-G solvation = -43.125541 kcal Electronic energy + Delta-G solvation = -17251.361089 eV Core-core repulsion = 14234.426306 eV Total energy + Delta-G solvation = -3016.934783 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.40724 -40.29442 -36.69575 -35.68396 -34.23244 -32.48614 -30.21940 -29.24750 -28.38761 -25.74912 -23.98906 -22.18107 -20.66966 -20.49794 -17.89456 -17.80787 -17.67365 -16.23663 -15.62364 -15.31868 -14.93505 -14.67196 -14.32357 -13.89998 -13.71105 -13.29057 -13.06552 -12.86474 -12.14951 -11.85933 -11.48369 -11.25361 -10.92345 -10.73772 -10.61537 -10.35971 -10.00524 -9.91810 -9.11781 -8.36218 -7.46919 -7.15053 -6.96590 -4.92457 1.87511 2.22937 2.89752 2.91386 2.95524 3.42668 3.55979 3.68831 3.82040 4.49317 4.58857 4.61626 5.04440 5.09182 5.17105 5.28107 5.45638 5.64975 5.74305 5.99095 6.17323 6.43746 6.71075 6.75314 6.88121 7.07558 7.32976 7.41267 7.65675 7.82935 8.09350 8.17789 8.43598 9.65441 9.92965 Molecular weight = 247.07amu Principal moments of inertia in cm(-1) A = 0.060632 B = 0.005474 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.687759 B = 5114.297862 C = 5541.782086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.700 5.700 2 C 0.067 3.933 3 Si 0.936 3.064 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.403 4.403 8 H 0.102 0.898 9 C 0.355 3.645 10 N -0.544 5.544 11 C 0.116 3.884 12 C -0.138 4.138 13 C 0.071 3.929 14 C -0.016 4.016 15 C -0.068 4.068 16 C -0.060 4.060 17 O -0.252 6.252 18 O -0.311 6.311 19 C 0.025 3.975 20 C 0.023 3.977 21 O -0.313 6.313 22 H 0.287 0.713 23 H 0.128 0.872 24 H 0.124 0.876 25 H 0.111 0.889 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.257 -8.078 -0.009 8.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.322 5.322 2 C -0.161 4.161 3 Si 0.758 3.242 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.184 1.184 7 C -0.436 4.436 8 H 0.120 0.880 9 C 0.176 3.824 10 N -0.277 5.277 11 C -0.008 4.008 12 C -0.160 4.160 13 C 0.026 3.974 14 C -0.061 4.061 15 C -0.087 4.087 16 C -0.112 4.112 17 O -0.152 6.152 18 O -0.227 6.227 19 C -0.051 4.051 20 C -0.053 4.053 21 O -0.228 6.228 22 H 0.099 0.901 23 H 0.146 0.854 24 H 0.142 0.858 25 H 0.129 0.871 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.847 -7.406 -0.009 7.934 hybrid contribution 0.657 -0.164 0.008 0.677 sum -2.190 -7.570 -0.001 7.880 Atomic orbital electron populations 1.69971 1.07467 1.29744 1.24993 1.26041 0.95197 1.01322 0.93586 0.85914 0.79685 0.78278 0.80363 1.18384 1.19677 1.18381 1.18476 0.95130 0.85816 1.44208 0.88012 1.22489 0.86540 0.83022 0.90397 1.71547 1.10346 1.12135 1.33650 1.20009 0.92263 0.91498 0.97052 1.18718 0.96581 0.89501 1.11198 1.18067 0.83057 0.91444 1.04811 1.17924 0.92163 0.81722 1.14291 1.18322 0.95773 0.88784 1.05853 1.19749 0.88341 0.90902 1.12163 1.84642 1.34788 1.16364 1.79423 1.86135 1.34659 1.16362 1.85546 1.23426 0.84591 0.97479 0.99606 1.23473 1.00377 0.81659 0.99765 1.86272 1.28159 1.23305 1.85023 0.90149 0.85438 0.85830 0.87080 0.91327 0.91139 0.87027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.98 11.83 55.57 0.66 -17.32 15 2 C 0.07 1.62 5.50 -17.28 -0.10 1.52 15 3 Si 0.94 17.20 29.56 -169.99 -5.03 12.17 15 4 H -0.26 -4.66 7.11 56.52 0.40 -4.26 15 5 H -0.27 -4.85 7.11 56.52 0.40 -4.44 15 6 H -0.26 -4.66 7.11 56.52 0.40 -4.26 15 7 C -0.40 -10.40 9.45 -38.21 -0.36 -10.76 15 8 H 0.10 2.37 7.85 -52.49 -0.41 1.96 15 9 C 0.35 9.97 7.68 -16.70 -0.13 9.84 15 10 N -0.54 -15.74 9.36 -11.07 -0.10 -15.85 15 11 C 0.12 3.09 7.22 -84.89 -0.61 2.48 15 12 C -0.14 -3.26 9.96 -39.28 -0.39 -3.65 15 13 C 0.07 1.51 6.45 -39.42 -0.25 1.26 15 14 C -0.02 -0.33 6.52 -38.68 -0.25 -0.58 15 15 C -0.07 -1.50 9.96 -39.37 -0.39 -1.89 15 16 C -0.06 -1.53 7.42 -38.40 -0.29 -1.81 15 17 O -0.25 -6.79 10.83 0.84 0.01 -6.78 15 18 O -0.31 -5.53 10.40 -32.22 -0.34 -5.86 15 19 C 0.03 0.32 7.25 37.39 0.27 0.59 15 20 C 0.02 0.30 7.25 37.39 0.27 0.57 15 21 O -0.31 -5.70 10.40 -32.92 -0.34 -6.04 15 22 H 0.29 6.54 8.29 -40.82 -0.34 6.20 15 23 H 0.13 2.89 8.06 -52.49 -0.42 2.47 15 24 H 0.12 2.43 8.06 -52.49 -0.42 2.01 15 25 H 0.11 0.99 8.14 -51.93 -0.42 0.56 15 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 15 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15 28 H 0.11 1.01 8.14 -51.93 -0.42 0.59 15 LS Contribution 253.21 15.07 3.82 3.82 Total: -1.00 -30.95 253.21 -5.64 -36.59 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -2.08 Total: 1.70 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -2.23 Total: -2.43 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.55 Total: -33.17 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.67 Total: -18.68 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.03 Total: 12.17 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.95 -5.64 -36.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074114497.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.538 kcal (2) G-P(sol) polarization free energy of solvation -30.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds