Wall clock time and date at job start Mon Mar 30 2020 03:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30582 * 1 3 3 Si 1.86806 * 120.00025 * 2 1 4 4 H 1.48506 * 109.46914 * 240.00182 * 3 2 1 5 5 H 1.48493 * 109.47105 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46846 * 120.00052 * 3 2 1 7 7 C 1.40380 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99987 * 180.02562 * 7 2 1 9 9 C 1.39762 * 119.99955 * 359.97438 * 7 2 1 10 10 N 1.32485 * 125.12647 * 0.04675 * 9 7 2 11 11 C 1.34051 * 108.93644 * 179.97438 * 10 9 7 12 12 C 1.40425 * 133.46905 * 179.97438 * 11 10 9 13 13 C 1.36795 * 120.00117 * 180.02562 * 12 11 10 14 14 C 1.40059 * 120.35797 * 359.82666 * 13 12 11 15 15 C 1.38818 * 120.31465 * 0.23411 * 14 13 12 16 16 C 1.38236 * 119.99218 * 359.85967 * 15 14 13 17 17 O 1.35112 * 125.12699 * 180.02562 * 9 7 2 18 18 O 1.35985 * 120.62358 * 180.31321 * 14 13 12 19 19 C 1.43134 * 116.74434 * 342.61827 * 18 14 13 20 20 C 1.53457 * 108.28670 * 46.45471 * 19 18 14 21 21 O 1.36203 * 119.03670 * 179.67843 * 13 12 11 22 22 H 0.97007 * 119.99762 * 0.02562 * 1 2 3 23 23 H 1.08000 * 120.00624 * 359.77973 * 12 11 10 24 24 H 1.07991 * 119.99938 * 179.88532 * 15 14 13 25 25 H 1.08999 * 109.70073 * 166.14895 * 19 18 14 26 26 H 1.09001 * 109.70247 * 286.75465 * 19 18 14 27 27 H 1.09000 * 109.70357 * 59.63420 * 20 19 18 28 28 H 1.08992 * 109.70738 * 180.25500 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2399 1.6178 0.0000 4 1 3.0936 1.6964 -1.2126 5 1 1.2749 2.7465 -0.0006 6 1 3.0936 1.6964 1.2125 7 6 2.0077 -1.2157 -0.0005 8 1 3.0877 -1.2157 -0.0001 9 6 1.3089 -2.4261 -0.0005 10 7 -0.0107 -2.5445 -0.0009 11 6 -0.3307 -3.8462 -0.0014 12 6 -1.5509 -4.5411 -0.0014 13 6 -1.5591 -5.9090 -0.0014 14 6 -0.3548 -6.6241 -0.0050 15 6 0.8595 -5.9514 -0.0037 16 6 0.8838 -4.5693 -0.0018 17 8 1.8772 -3.6519 -0.0005 18 8 -0.3567 -7.9839 -0.0114 19 6 -1.5773 -8.6282 0.3677 20 6 -2.7335 -7.9434 -0.3734 21 8 -2.7539 -6.5630 0.0052 22 1 -0.4850 0.8401 -0.0004 23 1 -2.4831 -3.9956 0.0025 24 1 1.7850 -6.5079 -0.0046 25 1 -1.5375 -9.6821 0.0923 26 1 -1.7237 -8.5342 1.4437 27 1 -2.5811 -8.0271 -1.4495 28 1 -3.6770 -8.4141 -0.0975 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074114497.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:45 Heat of formation + Delta-G solvation = -66.249186 kcal Electronic energy + Delta-G solvation = -17252.363806 eV Core-core repulsion = 14234.426306 eV Total energy + Delta-G solvation = -3017.937500 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.068 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.30397 -41.79452 -38.14150 -37.39603 -36.11085 -34.37385 -31.65753 -30.99442 -30.07652 -27.51793 -25.37829 -23.99267 -22.57543 -22.09002 -19.67472 -19.36080 -19.28577 -17.82995 -17.25762 -17.08519 -16.61881 -16.21932 -15.73001 -15.37623 -15.27132 -14.99130 -14.79560 -14.41008 -13.57415 -13.44636 -13.04966 -13.01149 -12.64107 -12.33101 -12.03700 -11.86255 -11.65150 -11.40484 -10.87286 -10.36136 -9.23330 -8.98496 -8.76494 -6.87747 0.05950 0.42982 1.39383 1.42074 1.58416 1.87758 1.99147 2.16644 2.18976 2.76483 2.84465 3.20839 3.39590 3.72003 3.93741 4.05471 4.14768 4.17302 4.50012 4.55837 4.66305 4.70944 4.90736 4.95023 5.08920 5.32688 5.47013 5.70483 5.94768 5.99537 6.27589 6.47692 6.53841 7.68511 8.16850 Molecular weight = 247.07amu Principal moments of inertia in cm(-1) A = 0.060632 B = 0.005474 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.687759 B = 5114.297862 C = 5541.782086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.023 3.977 3 Si 1.023 2.977 4 H -0.249 1.249 5 H -0.262 1.262 6 H -0.249 1.249 7 C -0.427 4.427 8 H 0.118 0.882 9 C 0.322 3.678 10 N -0.582 5.582 11 C 0.078 3.922 12 C -0.152 4.152 13 C 0.084 3.916 14 C 0.007 3.993 15 C -0.071 4.071 16 C -0.087 4.087 17 O -0.264 6.264 18 O -0.316 6.316 19 C 0.016 3.984 20 C 0.013 3.987 21 O -0.322 6.322 22 H 0.297 0.703 23 H 0.126 0.874 24 H 0.148 0.852 25 H 0.161 0.839 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.442 -9.646 -0.009 9.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.201 4.201 3 Si 0.839 3.161 4 H -0.173 1.173 5 H -0.186 1.186 6 H -0.173 1.173 7 C -0.461 4.461 8 H 0.136 0.864 9 C 0.143 3.857 10 N -0.317 5.317 11 C -0.045 4.045 12 C -0.175 4.175 13 C 0.038 3.962 14 C -0.040 4.040 15 C -0.090 4.090 16 C -0.138 4.138 17 O -0.164 6.164 18 O -0.231 6.231 19 C -0.059 4.059 20 C -0.062 4.062 21 O -0.237 6.237 22 H 0.108 0.892 23 H 0.144 0.856 24 H 0.165 0.835 25 H 0.179 0.821 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -3.069 -9.057 -0.008 9.563 hybrid contribution 0.517 -0.040 0.006 0.519 sum -2.552 -9.096 -0.002 9.447 Atomic orbital electron populations 1.70068 1.09644 1.31496 1.25636 1.27313 0.95987 1.04868 0.91948 0.84665 0.78153 0.72388 0.80903 1.17309 1.18601 1.17297 1.19118 0.96214 0.86117 1.44605 0.86362 1.23059 0.86985 0.83904 0.91795 1.71432 1.11098 1.13704 1.35504 1.20360 0.93840 0.91343 0.98909 1.18836 0.95634 0.90877 1.12114 1.18005 0.84534 0.90825 1.02827 1.17964 0.91316 0.83412 1.11259 1.18632 0.97536 0.87574 1.05258 1.20139 0.87711 0.91972 1.13952 1.84577 1.35400 1.16527 1.79938 1.86147 1.37669 1.14064 1.85259 1.23959 0.82308 0.99392 1.00200 1.24024 1.02977 0.78738 1.00451 1.86272 1.26434 1.26278 1.84721 0.89229 0.85594 0.83468 0.82131 0.90571 0.90347 0.82317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.79 11.83 21.90 0.26 -39.53 15 2 C 0.02 1.13 5.50 85.40 0.47 1.60 15 3 Si 1.02 35.01 29.56 68.60 2.03 37.04 15 4 H -0.25 -8.08 7.11 99.48 0.71 -7.37 15 5 H -0.26 -8.43 7.11 99.48 0.71 -7.73 15 6 H -0.25 -8.07 7.11 99.48 0.71 -7.36 15 7 C -0.43 -22.91 9.45 23.16 0.22 -22.69 15 8 H 0.12 5.65 7.85 -2.91 -0.02 5.63 15 9 C 0.32 19.12 7.68 84.96 0.65 19.78 15 10 N -0.58 -35.81 9.36 -301.99 -2.83 -38.64 15 11 C 0.08 4.35 7.22 40.10 0.29 4.64 15 12 C -0.15 -7.44 9.96 22.46 0.22 -7.22 15 13 C 0.08 3.50 6.45 22.37 0.14 3.65 15 14 C 0.01 0.26 6.52 22.85 0.15 0.41 15 15 C -0.07 -3.11 9.96 22.41 0.22 -2.89 15 16 C -0.09 -4.59 7.42 23.03 0.17 -4.42 15 17 O -0.26 -14.97 10.83 -19.89 -0.22 -15.18 15 18 O -0.32 -10.11 10.40 -81.41 -0.85 -10.96 15 19 C 0.02 0.33 7.25 72.14 0.52 0.85 15 20 C 0.01 0.27 7.25 72.14 0.52 0.79 15 21 O -0.32 -10.96 10.40 -83.89 -0.87 -11.83 15 22 H 0.30 13.91 8.29 -92.70 -0.77 13.15 15 23 H 0.13 5.98 8.06 -2.91 -0.02 5.96 15 24 H 0.15 5.64 8.06 -2.92 -0.02 5.62 15 25 H 0.16 1.83 8.14 -2.39 -0.02 1.81 15 26 H 0.08 1.54 8.14 -2.39 -0.02 1.52 15 27 H 0.08 1.62 8.14 -2.39 -0.02 1.60 15 28 H 0.16 1.96 8.14 -2.39 -0.02 1.94 15 Total: -1.00 -72.16 253.21 2.32 -69.84 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 1.20 Total: 14.76 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: 3.59 Total: -5.50 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -2.57 Total: -78.17 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -1.93 Total: -37.97 kcal Atomic # 14 Polarization: 35.01 SS G_CDS: 2.03 Total: 37.04 kcal Total: -72.16 2.32 -69.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074114497.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.594 kcal (2) G-P(sol) polarization free energy of solvation -72.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds