Wall clock time and date at job start Mon Mar 30 2020 03:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42097 * 108.57882 * 2 1 4 4 O 1.42095 * 108.57881 * 131.03117 * 2 1 3 5 5 C 1.81406 * 101.91889 * 245.51704 * 2 1 3 6 6 C 1.50696 * 109.47106 * 180.02562 * 5 2 1 7 7 N 1.29519 * 124.56305 * 89.69999 * 6 5 2 8 8 C 1.30673 * 117.63436 * 179.76046 * 7 6 5 9 9 C 1.38588 * 113.54934 * 0.51631 * 8 7 6 10 10 C 1.40040 * 126.25389 * 179.76479 * 9 8 7 11 11 H 1.07993 * 120.00414 * 348.76121 * 10 9 8 12 12 C 1.40077 * 119.99780 * 168.76541 * 10 9 8 13 13 N 1.30865 * 120.00039 * 161.73463 * 12 10 9 14 14 Si 1.86809 * 119.99912 * 341.73570 * 12 10 9 15 15 H 1.48492 * 109.46907 * 85.78650 * 14 12 10 16 16 H 1.48495 * 109.46802 * 205.78763 * 14 12 10 17 17 H 1.48499 * 109.47086 * 325.78553 * 14 12 10 18 18 S 1.70881 * 124.56048 * 269.99756 * 6 5 2 19 19 H 1.08995 * 109.47265 * 54.47914 * 1 2 3 20 20 H 1.08996 * 109.47558 * 174.48833 * 1 2 3 21 21 H 1.09003 * 109.46605 * 294.48572 * 1 2 3 22 22 H 1.09000 * 109.46928 * 300.00101 * 5 2 1 23 23 H 1.08996 * 109.46954 * 59.99576 * 5 2 1 24 24 H 1.08002 * 123.22994 * 180.28043 * 8 7 6 25 25 H 0.96995 * 119.99758 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8842 1.0160 5 6 2.1887 -0.7356 -1.6154 6 6 3.6826 -0.8182 -1.7953 7 7 4.4112 -1.8270 -1.4361 8 6 5.6965 -1.7570 -1.6615 9 6 6.0901 -0.5701 -2.2591 10 6 7.3977 -0.2146 -2.6122 11 1 8.2311 -0.8060 -2.2631 12 6 7.6247 0.9083 -3.4183 13 7 8.8135 1.4539 -3.4605 14 14 6.2305 1.6269 -4.4330 15 1 5.4525 2.5793 -3.6007 16 1 6.7908 2.3403 -5.6087 17 1 5.3402 0.5324 -4.8961 18 16 4.6441 0.4093 -2.4943 19 1 -0.3633 0.5970 -0.8364 20 1 -0.3634 -1.0228 -0.0987 21 1 -0.3632 0.4260 0.9353 22 1 1.7609 -1.7368 -1.6666 23 1 1.7609 -0.1170 -2.4042 24 1 6.3865 -2.5467 -1.4031 25 1 8.9707 2.2312 -4.0190 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082416565.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:18 Heat of formation + Delta-G solvation = -74.259438 kcal Electronic energy + Delta-G solvation = -13746.686447 eV Core-core repulsion = 11170.765325 eV Total energy + Delta-G solvation = -2575.921123 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 247.012 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.67996 -37.86317 -36.88670 -36.23674 -33.28206 -31.11012 -30.16175 -26.35474 -24.26055 -20.74626 -20.32615 -19.64081 -18.01037 -17.59512 -17.44837 -16.78096 -16.60709 -15.48451 -15.24932 -14.88247 -14.40054 -14.18121 -13.86906 -13.84096 -13.57484 -13.25499 -12.98424 -12.91678 -12.87042 -12.50975 -12.06759 -11.75937 -11.60170 -11.33338 -10.19280 -9.94812 -9.43218 -9.30055 -6.71565 -0.92377 0.27149 0.70599 1.05525 1.20136 1.38562 1.69794 1.97212 2.04072 2.17060 2.78468 2.90017 3.18270 3.63283 4.06891 4.14738 4.33380 4.49392 4.57189 4.91198 4.97840 5.07037 5.57647 5.70445 5.97956 6.18977 7.44830 7.66250 Molecular weight = 247.01amu Principal moments of inertia in cm(-1) A = 0.041500 B = 0.008030 C = 0.007412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.538930 B = 3485.973288 C = 3776.568736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.623 4.623 2 S 2.389 3.611 3 O -0.987 6.987 4 O -0.991 6.991 5 C -0.480 4.480 6 C -0.161 4.161 7 N -0.411 5.411 8 C -0.190 4.190 9 C -0.010 4.010 10 C -0.362 4.362 11 H 0.101 0.899 12 C 0.058 3.942 13 N -0.773 5.773 14 Si 0.855 3.145 15 H -0.218 1.218 16 H -0.208 1.208 17 H -0.214 1.214 18 S -0.032 6.032 19 H 0.160 0.840 20 H 0.158 0.842 21 H 0.141 0.859 22 H 0.164 0.836 23 H 0.164 0.836 24 H 0.156 0.844 25 H 0.315 0.685 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.180 1.732 -2.346 14.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.777 4.777 2 S 2.577 3.423 3 O -0.984 6.984 4 O -0.988 6.988 5 C -0.612 4.612 6 C -0.428 4.428 7 N -0.123 5.123 8 C -0.346 4.346 9 C -0.132 4.132 10 C -0.399 4.399 11 H 0.119 0.881 12 C -0.169 4.169 13 N -0.394 5.394 14 Si 0.673 3.327 15 H -0.143 1.143 16 H -0.131 1.131 17 H -0.137 1.137 18 S 0.215 5.785 19 H 0.178 0.822 20 H 0.176 0.824 21 H 0.160 0.840 22 H 0.182 0.818 23 H 0.181 0.819 24 H 0.174 0.826 25 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.023 2.674 -1.845 14.395 hybrid contribution 0.445 -0.803 -0.480 1.036 sum -13.578 1.871 -2.325 13.902 Atomic orbital electron populations 1.30011 1.19635 1.14258 1.13760 1.08749 0.81041 0.74539 0.77927 1.93506 1.81568 1.36372 1.86930 1.93498 1.81569 1.67495 1.56209 1.28487 0.94800 1.15669 1.22255 1.24575 0.98218 0.97797 1.22177 1.65091 1.06462 1.26936 1.13803 1.21626 0.90843 1.00225 1.21880 1.23510 0.95881 0.94730 0.99120 1.19231 0.91404 1.07582 1.21693 0.88146 1.26991 0.99417 0.94629 0.95906 1.69574 1.23977 1.17063 1.28826 0.86220 0.80408 0.83311 0.82740 1.14278 1.13054 1.13741 1.83445 1.03181 1.25213 1.66638 0.82168 0.82416 0.84023 0.81817 0.81864 0.82643 0.87249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -8.42 10.62 113.37 1.20 -7.21 15 2 S 2.39 72.57 5.34 -56.49 -0.30 72.26 15 3 O -0.99 -38.20 18.10 -127.37 -2.30 -40.51 15 4 O -0.99 -39.98 18.10 -127.37 -2.30 -42.28 15 5 C -0.48 -14.64 6.38 71.23 0.45 -14.18 15 6 C -0.16 -7.34 6.62 88.45 0.59 -6.76 15 7 N -0.41 -20.91 10.48 -188.22 -1.97 -22.88 15 8 C -0.19 -9.96 11.46 84.95 0.97 -8.98 15 9 C -0.01 -0.53 5.89 22.79 0.13 -0.39 15 10 C -0.36 -18.80 9.83 23.15 0.23 -18.57 15 11 H 0.10 5.35 8.06 -2.91 -0.02 5.33 15 12 C 0.06 2.74 5.51 85.28 0.47 3.21 15 13 N -0.77 -36.32 13.93 21.86 0.30 -36.02 15 14 Si 0.86 33.96 24.37 68.60 1.67 35.63 15 15 H -0.22 -8.69 6.73 99.48 0.67 -8.02 15 16 H -0.21 -7.02 7.11 99.48 0.71 -6.32 15 17 H -0.21 -8.70 6.57 99.48 0.65 -8.05 15 18 S -0.03 -1.55 16.76 -56.49 -0.95 -2.49 15 19 H 0.16 1.21 8.14 -2.39 -0.02 1.19 15 20 H 0.16 1.29 8.14 -2.39 -0.02 1.27 15 21 H 0.14 1.64 8.14 -2.39 -0.02 1.62 15 22 H 0.16 3.95 8.14 -2.39 -0.02 3.93 15 23 H 0.16 3.62 8.14 -2.39 -0.02 3.60 15 24 H 0.16 7.65 8.06 -2.91 -0.02 7.63 15 25 H 0.32 12.85 8.30 -92.71 -0.77 12.08 15 Total: -1.00 -74.22 248.91 -0.69 -74.91 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 1.12 Total: 14.26 kcal Atomic # 6 Polarization: -56.93 SS G_CDS: 4.05 Total: -52.88 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: -1.67 Total: -58.90 kcal Atomic # 8 Polarization: -78.18 SS G_CDS: -4.61 Total: -82.79 kcal Atomic # 14 Polarization: 33.96 SS G_CDS: 1.67 Total: 35.63 kcal Atomic # 16 Polarization: 71.02 SS G_CDS: -1.25 Total: 69.77 kcal Total: -74.22 -0.69 -74.91 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082416565.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.648 kcal (2) G-P(sol) polarization free energy of solvation -74.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds