Wall clock time and date at job start Mon Mar 30 2020 03:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99622 * 2 1 4 4 H 1.48496 * 109.47013 * 269.99901 * 3 2 1 5 5 H 1.48504 * 109.47186 * 30.00060 * 3 2 1 6 6 H 1.48503 * 109.47014 * 149.99706 * 3 2 1 7 7 C 1.37875 * 120.00574 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99494 * 0.02562 * 7 2 1 9 9 S 1.76197 * 120.00142 * 180.02562 * 7 2 1 10 10 O 1.42103 * 106.40048 * 66.46240 * 9 7 2 11 11 O 1.42097 * 106.40496 * 293.54308 * 9 7 2 12 12 N 1.65600 * 107.21614 * 179.97438 * 9 7 2 13 13 C 1.46922 * 120.63419 * 261.90214 * 12 9 7 14 14 C 1.53196 * 108.77466 * 126.37185 * 13 12 9 15 15 C 1.53042 * 109.30900 * 54.63557 * 14 13 12 16 16 C 1.53039 * 109.54135 * 298.63338 * 15 14 13 17 17 C 1.46929 * 120.62928 * 81.88473 * 12 9 7 18 18 H 1.09004 * 109.58804 * 113.83987 * 17 12 9 19 19 C 1.50707 * 109.58649 * 353.41778 * 17 12 9 20 20 O 1.20760 * 120.00052 * 125.55877 * 19 17 12 21 21 H 0.96994 * 120.00073 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.58413 * 6.58978 * 13 12 9 23 23 H 1.08994 * 109.71001 * 246.23037 * 13 12 9 24 24 H 1.09005 * 109.49772 * 294.68995 * 14 13 12 25 25 H 1.08993 * 109.52571 * 174.60464 * 14 13 12 26 26 H 1.08996 * 109.46230 * 58.65977 * 15 14 13 27 27 H 1.09007 * 109.45525 * 178.61392 * 15 14 13 28 28 H 1.08995 * 109.49372 * 181.31930 * 16 15 14 29 29 H 1.09002 * 109.49773 * 301.41846 * 16 15 14 30 30 H 1.08003 * 119.99708 * 305.56332 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0047 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 16 3.7667 -1.1938 0.0012 10 8 4.1674 -0.6491 1.2510 11 8 4.1684 -0.6496 -1.2484 12 7 4.2569 -2.7756 0.0025 13 6 4.6482 -3.4371 1.2546 14 6 3.8353 -4.7268 1.4058 15 6 4.0182 -5.5898 0.1552 16 6 3.4995 -4.8327 -1.0695 17 6 4.3085 -3.5443 -1.2486 18 1 5.3438 -3.7924 -1.4826 19 6 3.7164 -2.7275 -2.3682 20 8 4.3546 -2.5296 -3.3741 21 1 -0.4850 0.8400 -0.0004 22 1 4.4439 -2.7757 2.0966 23 1 5.7112 -3.6763 1.2274 24 1 2.7804 -4.4800 1.5264 25 1 4.1828 -5.2760 2.2808 26 1 5.0760 -5.8156 0.0213 27 1 3.4604 -6.5192 0.2706 28 1 3.6086 -5.4571 -1.9562 29 1 2.4478 -4.5849 -0.9255 30 1 2.7213 -2.3191 -2.2709 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083922771.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:36 Heat of formation + Delta-G solvation = -113.882312 kcal Electronic energy + Delta-G solvation = -17344.569408 eV Core-core repulsion = 14460.010332 eV Total energy + Delta-G solvation = -2884.559076 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.071 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.19012 -37.41330 -35.86771 -34.61928 -33.15396 -32.14402 -31.20642 -26.55250 -25.04708 -23.64972 -21.24401 -20.26406 -18.46403 -17.89822 -16.82153 -15.96119 -15.39758 -14.89173 -14.69271 -14.22646 -13.90060 -13.80821 -13.57219 -13.17139 -13.07518 -12.93560 -12.28055 -11.71589 -11.50778 -11.25121 -11.01179 -10.87036 -10.81337 -10.70481 -10.66283 -10.21268 -9.91404 -9.31501 -9.24228 -9.01619 -8.42468 -6.90315 -5.46929 1.76800 2.49055 3.01999 3.12767 3.21385 3.87972 3.98828 4.46115 4.56033 4.94681 4.96987 5.15826 5.22753 5.29588 5.47756 5.60585 5.75532 5.82365 5.87491 5.97405 6.11942 6.15447 6.17936 6.28860 6.52187 6.53937 7.15409 7.37909 7.87006 8.09676 8.59416 10.21045 Molecular weight = 247.07amu Principal moments of inertia in cm(-1) A = 0.027429 B = 0.011288 C = 0.010274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.580977 B = 2479.809741 C = 2724.592113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.156 3.844 3 Si 0.797 3.203 4 H -0.244 1.244 5 H -0.253 1.253 6 H -0.220 1.220 7 C -1.017 5.017 8 H 0.126 0.874 9 S 2.662 3.338 10 O -1.000 7.000 11 O -1.001 7.001 12 N -0.992 5.992 13 C 0.124 3.876 14 C -0.137 4.137 15 C -0.111 4.111 16 C -0.127 4.127 17 C 0.097 3.903 18 H 0.087 0.913 19 C 0.339 3.661 20 O -0.448 6.448 21 H 0.282 0.718 22 H 0.097 0.903 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.708 -9.404 1.597 10.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.065 4.065 3 Si 0.617 3.383 4 H -0.168 1.168 5 H -0.177 1.177 6 H -0.143 1.143 7 C -1.152 5.152 8 H 0.144 0.856 9 S 2.766 3.234 10 O -0.990 6.990 11 O -0.991 6.991 12 N -0.830 5.830 13 C -0.002 4.002 14 C -0.176 4.176 15 C -0.149 4.149 16 C -0.166 4.166 17 C -0.011 4.011 18 H 0.105 0.895 19 C 0.193 3.807 20 O -0.317 6.317 21 H 0.093 0.907 22 H 0.115 0.885 23 H 0.079 0.921 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.507 -8.468 1.037 10.155 hybrid contribution -0.510 0.433 0.203 0.699 sum 4.997 -8.035 1.240 9.543 Atomic orbital electron populations 1.69969 1.06495 1.29241 1.38801 1.24393 0.94777 0.98708 0.88593 0.87923 0.83634 0.84700 0.82091 1.16792 1.17693 1.14255 1.30469 1.15001 1.02388 1.67333 0.85563 1.01887 0.77726 0.70279 0.73469 1.93454 1.85458 1.75351 1.44720 1.93441 1.85489 1.74998 1.45126 1.57742 1.83450 1.30748 1.11076 1.21328 0.98092 0.94694 0.86042 1.21944 1.01887 0.96187 0.97600 1.21413 1.01051 0.97915 0.94519 1.21839 1.00991 0.94943 0.98828 1.21852 1.01069 0.93358 0.84782 0.89550 1.26262 0.93452 0.75021 0.85933 1.90293 1.63142 1.47097 1.31192 0.90713 0.88460 0.92090 0.90695 0.91148 0.92024 0.91690 0.90915 0.90047 0.86708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.49 13.96 55.43 0.77 -21.72 16 2 C 0.16 4.28 5.47 -17.82 -0.10 4.18 16 3 Si 0.80 20.04 26.54 -169.99 -4.51 15.52 16 4 H -0.24 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.25 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.22 -5.68 5.61 56.52 0.32 -5.37 16 7 C -1.02 -26.60 9.31 30.60 0.28 -26.32 16 8 H 0.13 3.25 8.06 -52.49 -0.42 2.82 16 9 S 2.66 64.78 3.62 -107.50 -0.39 64.39 16 10 O -1.00 -26.03 14.51 -57.17 -0.83 -26.86 16 11 O -1.00 -26.30 13.69 -61.98 -0.85 -27.15 16 12 N -0.99 -18.84 3.29 -107.70 -0.35 -19.19 16 13 C 0.12 1.93 6.42 -3.71 -0.02 1.90 16 14 C -0.14 -1.73 6.08 -26.61 -0.16 -1.90 16 15 C -0.11 -1.27 5.88 -26.69 -0.16 -1.42 16 16 C -0.13 -1.68 5.35 -26.62 -0.14 -1.83 16 17 C 0.10 1.65 3.37 -68.75 -0.23 1.41 16 18 H 0.09 1.36 8.13 -51.93 -0.42 0.94 16 19 C 0.34 6.77 7.04 36.01 0.25 7.03 16 20 O -0.45 -9.96 17.90 -1.87 -0.03 -9.99 16 21 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 22 H 0.10 1.61 6.91 -51.93 -0.36 1.25 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.12 2.35 6.81 -52.48 -0.36 1.99 16 LS Contribution 257.46 15.07 3.88 3.88 Total: -1.00 -31.62 257.46 -6.33 -37.95 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -3.74 Total: 0.10 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: -0.28 Total: -16.94 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.42 Total: -40.91 kcal Atomic # 8 Polarization: -62.28 SS G_CDS: -1.71 Total: -64.00 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.51 Total: 15.52 kcal Atomic # 16 Polarization: 64.78 SS G_CDS: -0.39 Total: 64.39 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.62 -6.33 -37.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083922771.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.933 kcal (2) G-P(sol) polarization free energy of solvation -31.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds