Wall clock time and date at job start Mon Mar 30 2020 03:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99622 * 2 1 4 4 H 1.48496 * 109.47013 * 269.99901 * 3 2 1 5 5 H 1.48504 * 109.47186 * 30.00060 * 3 2 1 6 6 H 1.48503 * 109.47014 * 149.99706 * 3 2 1 7 7 C 1.37875 * 120.00574 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99494 * 0.02562 * 7 2 1 9 9 S 1.76197 * 120.00142 * 180.02562 * 7 2 1 10 10 O 1.42103 * 106.40048 * 66.46240 * 9 7 2 11 11 O 1.42097 * 106.40496 * 293.54308 * 9 7 2 12 12 N 1.65600 * 107.21614 * 179.97438 * 9 7 2 13 13 C 1.46922 * 120.63419 * 261.90214 * 12 9 7 14 14 C 1.53196 * 108.77466 * 126.37185 * 13 12 9 15 15 C 1.53042 * 109.30900 * 54.63557 * 14 13 12 16 16 C 1.53039 * 109.54135 * 298.63338 * 15 14 13 17 17 C 1.46929 * 120.62928 * 81.88473 * 12 9 7 18 18 H 1.09004 * 109.58804 * 113.83987 * 17 12 9 19 19 C 1.50707 * 109.58649 * 353.41778 * 17 12 9 20 20 O 1.20760 * 120.00052 * 125.55877 * 19 17 12 21 21 H 0.96994 * 120.00073 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.58413 * 6.58978 * 13 12 9 23 23 H 1.08994 * 109.71001 * 246.23037 * 13 12 9 24 24 H 1.09005 * 109.49772 * 294.68995 * 14 13 12 25 25 H 1.08993 * 109.52571 * 174.60464 * 14 13 12 26 26 H 1.08996 * 109.46230 * 58.65977 * 15 14 13 27 27 H 1.09007 * 109.45525 * 178.61392 * 15 14 13 28 28 H 1.08995 * 109.49372 * 181.31930 * 16 15 14 29 29 H 1.09002 * 109.49773 * 301.41846 * 16 15 14 30 30 H 1.08003 * 119.99708 * 305.56332 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0047 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 16 3.7667 -1.1938 0.0012 10 8 4.1674 -0.6491 1.2510 11 8 4.1684 -0.6496 -1.2484 12 7 4.2569 -2.7756 0.0025 13 6 4.6482 -3.4371 1.2546 14 6 3.8353 -4.7268 1.4058 15 6 4.0182 -5.5898 0.1552 16 6 3.4995 -4.8327 -1.0695 17 6 4.3085 -3.5443 -1.2486 18 1 5.3438 -3.7924 -1.4826 19 6 3.7164 -2.7275 -2.3682 20 8 4.3546 -2.5296 -3.3741 21 1 -0.4850 0.8400 -0.0004 22 1 4.4439 -2.7757 2.0966 23 1 5.7112 -3.6763 1.2274 24 1 2.7804 -4.4800 1.5264 25 1 4.1828 -5.2760 2.2808 26 1 5.0760 -5.8156 0.0213 27 1 3.4604 -6.5192 0.2706 28 1 3.6086 -5.4571 -1.9562 29 1 2.4478 -4.5849 -0.9255 30 1 2.7213 -2.3191 -2.2709 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083922771.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:35 Heat of formation + Delta-G solvation = -137.550938 kcal Electronic energy + Delta-G solvation = -17345.595757 eV Core-core repulsion = 14460.010332 eV Total energy + Delta-G solvation = -2885.585425 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.071 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.68505 -38.81695 -37.84725 -36.63024 -35.22598 -33.37802 -32.45408 -28.61425 -26.38874 -24.85542 -22.76230 -21.47963 -20.25736 -19.68797 -18.68589 -17.54465 -17.29477 -16.47536 -16.13389 -15.71889 -15.57097 -15.26032 -15.14734 -14.94747 -14.58383 -14.45409 -13.59798 -13.50976 -13.37854 -12.91324 -12.77800 -12.65936 -12.41482 -12.00798 -11.86853 -11.69780 -11.37637 -11.35336 -11.17389 -10.57131 -9.88687 -8.99170 -7.54950 -0.07545 0.86671 1.03172 1.11149 1.18623 1.85850 2.30897 2.40164 3.03892 3.26189 3.74088 3.84935 3.91668 4.11925 4.25907 4.33593 4.42700 4.62799 4.77479 4.81151 4.96571 5.07173 5.23087 5.27386 5.30035 5.39047 5.55152 5.72357 6.02452 6.28023 6.51272 8.17176 Molecular weight = 247.07amu Principal moments of inertia in cm(-1) A = 0.027429 B = 0.011288 C = 0.010274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.580977 B = 2479.809741 C = 2724.592113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.118 3.882 3 Si 0.812 3.188 4 H -0.244 1.244 5 H -0.218 1.218 6 H -0.233 1.233 7 C -1.028 5.028 8 H 0.121 0.879 9 S 2.675 3.325 10 O -1.020 7.020 11 O -1.026 7.026 12 N -0.989 5.989 13 C 0.110 3.890 14 C -0.135 4.135 15 C -0.106 4.106 16 C -0.126 4.126 17 C 0.098 3.902 18 H 0.107 0.893 19 C 0.336 3.664 20 O -0.475 6.475 21 H 0.292 0.708 22 H 0.081 0.919 23 H 0.090 0.910 24 H 0.057 0.943 25 H 0.103 0.897 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.618 -11.178 2.181 12.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.100 4.100 3 Si 0.630 3.370 4 H -0.167 1.167 5 H -0.140 1.140 6 H -0.155 1.155 7 C -1.161 5.161 8 H 0.139 0.861 9 S 2.779 3.221 10 O -1.011 7.011 11 O -1.016 7.016 12 N -0.831 5.831 13 C -0.013 4.013 14 C -0.174 4.174 15 C -0.144 4.144 16 C -0.165 4.165 17 C -0.009 4.009 18 H 0.125 0.875 19 C 0.192 3.808 20 O -0.346 6.346 21 H 0.103 0.897 22 H 0.100 0.900 23 H 0.108 0.892 24 H 0.076 0.924 25 H 0.121 0.879 26 H 0.099 0.901 27 H 0.109 0.891 28 H 0.117 0.883 29 H 0.090 0.910 30 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.384 -10.230 1.641 12.170 hybrid contribution -0.777 0.895 0.020 1.185 sum 5.608 -9.335 1.662 11.016 Atomic orbital electron populations 1.69978 1.07071 1.30436 1.39758 1.24980 0.95471 1.00779 0.88806 0.87679 0.83038 0.83924 0.82394 1.16737 1.14041 1.15521 1.30852 1.16736 1.02058 1.66455 0.86132 1.01233 0.76680 0.71748 0.72488 1.93419 1.85301 1.76940 1.45399 1.93408 1.85370 1.76776 1.46013 1.57393 1.83095 1.29315 1.13259 1.21724 1.00430 0.95495 0.83691 1.21967 1.00398 0.95111 0.99896 1.21446 1.02585 0.98074 0.92282 1.21932 0.99790 0.93421 1.01345 1.22010 1.02709 0.93794 0.82370 0.87480 1.26484 0.93068 0.74665 0.86563 1.90277 1.63570 1.48155 1.32566 0.89743 0.90047 0.89172 0.92388 0.87889 0.90135 0.89097 0.88291 0.91041 0.88217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.69 13.96 21.45 0.30 -46.39 16 2 C 0.12 6.51 5.47 84.65 0.46 6.97 16 3 Si 0.81 40.34 26.54 68.60 1.82 42.16 16 4 H -0.24 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.22 -9.56 7.11 99.48 0.71 -8.86 16 6 H -0.23 -11.99 5.61 99.48 0.56 -11.43 16 7 C -1.03 -54.49 9.31 67.73 0.63 -53.86 16 8 H 0.12 6.34 8.06 -2.91 -0.02 6.32 16 9 S 2.68 130.39 3.62 -56.49 -0.20 130.19 16 10 O -1.02 -53.25 14.51 -128.00 -1.86 -55.10 16 11 O -1.03 -54.39 13.69 -123.41 -1.69 -56.08 16 12 N -0.99 -36.23 3.29 -494.65 -1.63 -37.86 16 13 C 0.11 3.17 6.42 86.36 0.55 3.73 16 14 C -0.13 -2.95 6.08 30.67 0.19 -2.76 16 15 C -0.11 -1.94 5.88 30.62 0.18 -1.76 16 16 C -0.13 -2.96 5.35 30.67 0.16 -2.79 16 17 C 0.10 3.13 3.37 44.23 0.15 3.27 16 18 H 0.11 3.04 8.13 -2.38 -0.02 3.02 16 19 C 0.34 13.37 7.04 71.24 0.50 13.87 16 20 O -0.47 -21.06 17.90 6.08 0.11 -20.96 16 21 H 0.29 14.66 8.31 -92.71 -0.77 13.89 16 22 H 0.08 2.60 6.91 -2.39 -0.02 2.59 16 23 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 25 H 0.10 1.62 8.14 -2.39 -0.02 1.61 16 26 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 28 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.10 4.21 6.81 -2.91 -0.02 4.19 16 Total: -1.00 -68.37 257.46 0.66 -67.70 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 0.99 Total: 9.67 kcal Atomic # 6 Polarization: -36.16 SS G_CDS: 2.83 Total: -33.33 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -1.33 Total: -84.25 kcal Atomic # 8 Polarization: -128.70 SS G_CDS: -3.44 Total: -132.14 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 1.82 Total: 42.16 kcal Atomic # 16 Polarization: 130.39 SS G_CDS: -0.20 Total: 130.19 kcal Total: -68.37 0.66 -67.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083922771.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.846 kcal (2) G-P(sol) polarization free energy of solvation -68.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds