Wall clock time and date at job start Mon Mar 30 2020 03:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00218 * 2 1 4 4 H 1.48500 * 109.47351 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47211 * 300.00619 * 3 2 1 6 6 H 1.48509 * 109.46987 * 59.99968 * 3 2 1 7 7 C 1.37880 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99680 * 179.72407 * 7 2 1 9 9 S 1.76199 * 120.00013 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.40031 * 293.26670 * 9 7 2 11 11 O 1.42101 * 106.40156 * 66.18411 * 9 7 2 12 12 N 1.65598 * 107.21820 * 179.72553 * 9 7 2 13 13 C 1.46917 * 120.63105 * 269.72243 * 12 9 7 14 14 C 1.53628 * 108.54540 * 126.36928 * 13 12 9 15 15 C 1.53037 * 109.24128 * 54.85431 * 14 13 12 16 16 C 1.53038 * 109.53974 * 298.51290 * 15 14 13 17 17 H 1.09005 * 109.51959 * 301.40113 * 16 15 14 18 18 C 1.50693 * 109.49937 * 181.32027 * 16 15 14 19 19 O 1.20759 * 120.00648 * 120.16401 * 18 16 15 20 20 C 1.46926 * 120.62885 * 89.99920 * 12 9 7 21 21 H 0.97000 * 119.99443 * 359.97438 * 1 2 3 22 22 H 1.09008 * 109.58390 * 246.20261 * 13 12 9 23 23 H 1.08997 * 109.58909 * 6.62403 * 13 12 9 24 24 H 1.08998 * 109.63039 * 294.86141 * 14 13 12 25 25 H 1.08997 * 109.42715 * 174.72210 * 14 13 12 26 26 H 1.08998 * 109.45878 * 178.49083 * 15 14 13 27 27 H 1.09000 * 109.44981 * 58.52606 * 15 14 13 28 28 H 1.08010 * 119.99988 * 300.15952 * 18 16 15 29 29 H 1.09000 * 109.59062 * 353.37159 * 20 12 9 30 30 H 1.08996 * 109.58683 * 113.65792 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0050 9 16 1.1235 -2.7200 -0.0005 10 8 0.4570 -2.7985 1.2520 11 8 0.4457 -2.7920 -1.2474 12 7 2.2482 -3.9354 -0.0088 13 6 2.7464 -4.4857 -1.2767 14 6 4.2811 -4.4173 -1.2695 15 6 4.8119 -5.1301 -0.0237 16 6 4.2928 -4.4235 1.2306 17 1 4.6128 -3.3815 1.2204 18 6 4.8421 -5.1064 2.4564 19 8 5.5219 -4.4872 3.2392 20 6 2.7624 -4.4881 1.2517 21 1 -0.4849 0.8401 0.0004 22 1 2.4245 -5.5223 -1.3767 23 1 2.3569 -3.8982 -2.1081 24 1 4.6012 -3.3754 -1.2567 25 1 4.6700 -4.9069 -2.1623 26 1 5.9017 -5.1070 -0.0288 27 1 4.4707 -6.1653 -0.0248 28 1 4.6278 -6.1499 2.6350 29 1 2.3835 -3.9022 2.0891 30 1 2.4398 -5.5241 1.3549 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083922787.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:20 Heat of formation + Delta-G solvation = -134.582687 kcal Electronic energy + Delta-G solvation = -16811.896914 eV Core-core repulsion = 13926.440203 eV Total energy + Delta-G solvation = -2885.456712 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.071 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.44768 -37.54153 -35.34493 -34.00334 -33.13365 -32.13242 -31.12885 -26.13967 -24.66878 -24.01361 -21.33682 -20.20790 -18.57418 -17.51144 -16.37967 -16.07382 -15.19575 -15.07597 -14.91883 -14.50429 -14.07188 -13.82225 -13.46588 -13.07302 -12.88199 -12.47055 -12.04143 -11.38968 -11.34241 -11.24135 -10.95724 -10.87311 -10.70431 -10.59093 -10.33525 -10.14564 -10.05896 -9.48775 -9.26792 -8.92304 -8.26654 -6.71160 -5.33114 1.96344 2.24268 3.05009 3.13537 3.20927 4.03210 4.24131 4.54233 4.62872 4.82921 4.96139 5.06769 5.25451 5.49772 5.61616 5.70467 5.73652 5.84279 5.93213 6.00407 6.07375 6.18290 6.23924 6.39345 6.51259 6.74274 7.31551 7.40127 7.50536 7.97002 8.88368 10.22456 Molecular weight = 247.07amu Principal moments of inertia in cm(-1) A = 0.023718 B = 0.009150 C = 0.008148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.258901 B = 3059.210083 C = 3435.486931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.133 3.867 3 Si 0.919 3.081 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.271 1.271 7 C -1.018 5.018 8 H 0.102 0.898 9 S 2.713 3.287 10 O -1.003 7.003 11 O -1.002 7.002 12 N -1.010 6.010 13 C 0.124 3.876 14 C -0.134 4.134 15 C -0.100 4.100 16 C -0.177 4.177 17 H 0.101 0.899 18 C 0.355 3.645 19 O -0.462 6.462 20 C 0.140 3.860 21 H 0.290 0.710 22 H 0.059 0.941 23 H 0.093 0.907 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.489 -9.443 -0.940 12.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.085 4.085 3 Si 0.743 3.257 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.196 1.196 7 C -1.152 5.152 8 H 0.120 0.880 9 S 2.814 3.186 10 O -0.994 6.994 11 O -0.992 6.992 12 N -0.844 5.844 13 C -0.002 4.002 14 C -0.173 4.173 15 C -0.138 4.138 16 C -0.198 4.198 17 H 0.120 0.880 18 C 0.210 3.790 19 O -0.333 6.333 20 C 0.013 3.987 21 H 0.101 0.899 22 H 0.078 0.922 23 H 0.111 0.889 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.720 -9.178 -0.515 12.004 hybrid contribution 0.961 1.217 -0.107 1.554 sum 8.681 -7.961 -0.621 11.795 Atomic orbital electron populations 1.69902 1.06769 1.30644 1.40255 1.24750 0.94452 1.00815 0.88472 0.86153 0.80512 0.80472 0.78573 1.18604 1.19602 1.19589 1.30632 1.06121 1.11767 1.66656 0.87964 1.00591 0.72152 0.72997 0.72815 1.93355 1.72951 1.87545 1.45520 1.93356 1.72439 1.87544 1.45872 1.58236 1.61898 1.54832 1.09457 1.21336 0.93158 0.99230 0.86470 1.21981 0.96530 1.01744 0.97081 1.21331 0.99858 0.99280 0.93348 1.22594 0.98643 1.02995 0.95549 0.88029 1.26012 0.75347 0.93616 0.84052 1.90395 1.29488 1.68895 1.44488 1.20993 0.90232 0.99845 0.87645 0.89929 0.92237 0.88911 0.90902 0.91027 0.91909 0.91289 0.88954 0.88775 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.79 13.19 55.43 0.73 -24.06 16 2 C 0.13 3.70 5.46 -17.82 -0.10 3.60 16 3 Si 0.92 20.67 29.54 -169.99 -5.02 15.65 16 4 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -1.02 -27.72 9.75 30.60 0.30 -27.42 16 8 H 0.10 2.57 7.81 -52.49 -0.41 2.16 16 9 S 2.71 70.61 4.97 -107.50 -0.53 70.07 16 10 O -1.00 -28.76 16.73 -57.17 -0.96 -29.71 16 11 O -1.00 -28.54 16.72 -57.17 -0.96 -29.50 16 12 N -1.01 -19.41 3.28 -113.28 -0.37 -19.78 16 13 C 0.12 1.95 6.41 -3.49 -0.02 1.93 16 14 C -0.13 -1.70 6.10 -26.39 -0.16 -1.86 16 15 C -0.10 -1.10 5.15 -26.69 -0.14 -1.24 16 16 C -0.18 -2.38 2.76 -91.66 -0.25 -2.64 16 17 H 0.10 1.59 8.12 -51.93 -0.42 1.17 16 18 C 0.35 4.26 10.45 36.00 0.38 4.63 16 19 O -0.46 -7.44 17.90 6.00 0.11 -7.34 16 20 C 0.14 2.23 5.64 -3.71 -0.02 2.20 16 21 H 0.29 7.63 8.31 -40.82 -0.34 7.29 16 22 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 23 H 0.09 1.60 7.12 -51.93 -0.37 1.23 16 24 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.09 0.73 8.06 -52.48 -0.42 0.31 16 29 H 0.09 1.67 7.13 -51.93 -0.37 1.30 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 270.77 15.07 4.08 4.08 Total: -1.00 -35.51 270.77 -6.60 -42.12 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -3.67 Total: -0.75 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: -0.02 Total: -20.79 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.36 Total: -43.84 kcal Atomic # 8 Polarization: -64.74 SS G_CDS: -1.81 Total: -66.55 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 70.61 SS G_CDS: -0.53 Total: 70.07 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -35.51 -6.60 -42.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083922787.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.464 kcal (2) G-P(sol) polarization free energy of solvation -35.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds