Wall clock time and date at job start Mon Mar 30 2020 03:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00218 * 2 1 4 4 H 1.48500 * 109.47351 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47211 * 300.00619 * 3 2 1 6 6 H 1.48509 * 109.46987 * 59.99968 * 3 2 1 7 7 C 1.37880 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99680 * 179.72407 * 7 2 1 9 9 S 1.76199 * 120.00013 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.40031 * 293.26670 * 9 7 2 11 11 O 1.42101 * 106.40156 * 66.18411 * 9 7 2 12 12 N 1.65598 * 107.21820 * 179.72553 * 9 7 2 13 13 C 1.46917 * 120.63105 * 269.72243 * 12 9 7 14 14 C 1.53628 * 108.54540 * 126.36928 * 13 12 9 15 15 C 1.53037 * 109.24128 * 54.85431 * 14 13 12 16 16 C 1.53038 * 109.53974 * 298.51290 * 15 14 13 17 17 H 1.09005 * 109.51959 * 301.40113 * 16 15 14 18 18 C 1.50693 * 109.49937 * 181.32027 * 16 15 14 19 19 O 1.20759 * 120.00648 * 120.16401 * 18 16 15 20 20 C 1.46926 * 120.62885 * 89.99920 * 12 9 7 21 21 H 0.97000 * 119.99443 * 359.97438 * 1 2 3 22 22 H 1.09008 * 109.58390 * 246.20261 * 13 12 9 23 23 H 1.08997 * 109.58909 * 6.62403 * 13 12 9 24 24 H 1.08998 * 109.63039 * 294.86141 * 14 13 12 25 25 H 1.08997 * 109.42715 * 174.72210 * 14 13 12 26 26 H 1.08998 * 109.45878 * 178.49083 * 15 14 13 27 27 H 1.09000 * 109.44981 * 58.52606 * 15 14 13 28 28 H 1.08010 * 119.99988 * 300.15952 * 18 16 15 29 29 H 1.09000 * 109.59062 * 353.37159 * 20 12 9 30 30 H 1.08996 * 109.58683 * 113.65792 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0050 9 16 1.1235 -2.7200 -0.0005 10 8 0.4570 -2.7985 1.2520 11 8 0.4457 -2.7920 -1.2474 12 7 2.2482 -3.9354 -0.0088 13 6 2.7464 -4.4857 -1.2767 14 6 4.2811 -4.4173 -1.2695 15 6 4.8119 -5.1301 -0.0237 16 6 4.2928 -4.4235 1.2306 17 1 4.6128 -3.3815 1.2204 18 6 4.8421 -5.1064 2.4564 19 8 5.5219 -4.4872 3.2392 20 6 2.7624 -4.4881 1.2517 21 1 -0.4849 0.8401 0.0004 22 1 2.4245 -5.5223 -1.3767 23 1 2.3569 -3.8982 -2.1081 24 1 4.6012 -3.3754 -1.2567 25 1 4.6700 -4.9069 -2.1623 26 1 5.9017 -5.1070 -0.0288 27 1 4.4707 -6.1653 -0.0248 28 1 4.6278 -6.1499 2.6350 29 1 2.3835 -3.9022 2.0891 30 1 2.4398 -5.5241 1.3549 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083922787.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:19 Heat of formation + Delta-G solvation = -163.051210 kcal Electronic energy + Delta-G solvation = -16813.131402 eV Core-core repulsion = 13926.440203 eV Total energy + Delta-G solvation = -2886.691199 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.071 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.53524 -38.73746 -37.48838 -36.16303 -35.22402 -33.41075 -32.28449 -28.28059 -25.77082 -25.27333 -22.43989 -21.42505 -20.42331 -19.22165 -18.33003 -17.23293 -17.07397 -16.54295 -16.22295 -15.90744 -15.53561 -15.25223 -14.93981 -14.44980 -14.13003 -14.00587 -13.62406 -13.36896 -13.06677 -12.68445 -12.52755 -12.49932 -12.35544 -12.34229 -11.87139 -11.80330 -11.36255 -11.29810 -10.95361 -10.50774 -9.74189 -8.77496 -7.50553 0.27407 1.06283 1.28041 1.29630 1.46546 2.16619 2.53990 2.79613 3.41743 3.72359 3.82134 3.87174 4.04064 4.16509 4.37952 4.43102 4.47131 4.67317 4.73028 4.85302 4.95170 5.04244 5.16352 5.20606 5.22185 5.39150 5.50541 5.87924 5.98484 6.47805 6.75966 8.17545 Molecular weight = 247.07amu Principal moments of inertia in cm(-1) A = 0.023718 B = 0.009150 C = 0.008148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.258901 B = 3059.210083 C = 3435.486931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.071 3.929 3 Si 0.985 3.015 4 H -0.252 1.252 5 H -0.256 1.256 6 H -0.260 1.260 7 C -1.040 5.040 8 H 0.112 0.888 9 S 2.719 3.281 10 O -1.041 7.041 11 O -1.037 7.037 12 N -1.007 6.007 13 C 0.113 3.887 14 C -0.131 4.131 15 C -0.094 4.094 16 C -0.178 4.178 17 H 0.066 0.934 18 C 0.370 3.630 19 O -0.508 6.508 20 C 0.130 3.870 21 H 0.299 0.701 22 H 0.094 0.906 23 H 0.068 0.932 24 H 0.048 0.952 25 H 0.107 0.893 26 H 0.081 0.919 27 H 0.105 0.895 28 H 0.155 0.845 29 H 0.064 0.936 30 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.583 -11.033 -1.185 15.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.142 4.142 3 Si 0.803 3.197 4 H -0.175 1.175 5 H -0.180 1.180 6 H -0.184 1.184 7 C -1.173 5.173 8 H 0.130 0.870 9 S 2.821 3.179 10 O -1.031 7.031 11 O -1.027 7.027 12 N -0.845 5.845 13 C -0.012 4.012 14 C -0.170 4.170 15 C -0.131 4.131 16 C -0.199 4.199 17 H 0.085 0.915 18 C 0.228 3.772 19 O -0.381 6.381 20 C 0.005 3.995 21 H 0.109 0.891 22 H 0.112 0.888 23 H 0.086 0.914 24 H 0.067 0.933 25 H 0.125 0.875 26 H 0.100 0.900 27 H 0.124 0.876 28 H 0.171 0.829 29 H 0.083 0.917 30 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 9.804 -10.785 -0.771 14.595 hybrid contribution 0.312 1.599 -0.057 1.630 sum 10.116 -9.185 -0.828 13.689 Atomic orbital electron populations 1.69983 1.08618 1.32220 1.41651 1.25965 0.95365 1.05225 0.87631 0.85175 0.79398 0.75542 0.79541 1.17480 1.17965 1.18392 1.31031 1.06829 1.13108 1.66361 0.86973 0.99992 0.72799 0.73687 0.71448 1.93293 1.74756 1.88317 1.46775 1.93295 1.74190 1.88298 1.46965 1.57681 1.61202 1.53471 1.12195 1.21699 0.95441 1.00244 0.83808 1.21986 0.93937 1.01248 0.99820 1.21372 1.00904 1.00409 0.90456 1.22592 0.96723 1.02076 0.98482 0.91519 1.26547 0.73339 0.95375 0.81964 1.90404 1.31867 1.70344 1.45519 1.21286 0.91988 1.01312 0.84962 0.89102 0.88767 0.91373 0.93289 0.87518 0.90017 0.87627 0.82909 0.91699 0.87259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.96 13.19 21.45 0.28 -53.68 16 2 C 0.07 4.02 5.46 84.66 0.46 4.48 16 3 Si 0.98 42.42 29.54 68.60 2.03 44.45 16 4 H -0.25 -10.26 7.11 99.48 0.71 -9.56 16 5 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 6 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 7 C -1.04 -58.26 9.75 67.73 0.66 -57.60 16 8 H 0.11 5.80 7.81 -2.91 -0.02 5.78 16 9 S 2.72 146.19 4.97 -56.49 -0.28 145.91 16 10 O -1.04 -62.09 16.73 -128.00 -2.14 -64.23 16 11 O -1.04 -61.34 16.72 -128.00 -2.14 -63.48 16 12 N -1.01 -38.35 3.28 -512.29 -1.68 -40.03 16 13 C 0.11 3.36 6.41 86.51 0.55 3.91 16 14 C -0.13 -2.94 6.10 30.82 0.19 -2.75 16 15 C -0.09 -1.66 5.15 30.62 0.16 -1.50 16 16 C -0.18 -4.39 2.76 -11.46 -0.03 -4.43 16 17 H 0.07 2.10 8.12 -2.38 -0.02 2.08 16 18 C 0.37 7.67 10.45 71.23 0.74 8.41 16 19 O -0.51 -15.58 17.90 -1.45 -0.03 -15.61 16 20 C 0.13 3.95 5.64 86.36 0.49 4.44 16 21 H 0.30 16.16 8.31 -92.71 -0.77 15.39 16 22 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 23 H 0.07 2.36 7.12 -2.39 -0.02 2.34 16 24 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.16 1.48 8.06 -2.91 -0.02 1.45 16 29 H 0.06 2.34 7.13 -2.39 -0.02 2.32 16 30 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -81.98 270.77 0.39 -81.58 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 1.13 Total: 10.14 kcal Atomic # 6 Polarization: -48.26 SS G_CDS: 3.22 Total: -45.04 kcal Atomic # 7 Polarization: -92.31 SS G_CDS: -1.40 Total: -93.71 kcal Atomic # 8 Polarization: -139.01 SS G_CDS: -4.31 Total: -143.32 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: 146.19 SS G_CDS: -0.28 Total: 145.91 kcal Total: -81.98 0.39 -81.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083922787.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.467 kcal (2) G-P(sol) polarization free energy of solvation -81.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds