Wall clock time and date at job start Mon Mar 30 2020 03:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99948 * 3 2 1 5 5 H 1.48497 * 109.46782 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00225 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.47422 * 125.64683 * 359.68866 * 13 11 10 15 15 C 1.55131 * 104.72363 * 155.82150 * 14 13 11 16 16 H 1.08999 * 110.90865 * 155.27622 * 15 14 13 17 17 O 1.42901 * 111.22261 * 279.17756 * 15 14 13 18 18 C 1.55162 * 101.48519 * 37.29545 * 15 14 13 19 19 H 1.08993 * 110.72142 * 82.69793 * 18 15 14 20 20 O 1.42893 * 110.87102 * 205.90153 * 18 15 14 21 21 C 1.47023 * 125.64979 * 180.02562 * 13 11 10 22 22 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 24 24 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 25 25 H 1.09003 * 110.36588 * 274.74789 * 14 13 11 26 26 H 1.09004 * 110.36868 * 37.07194 * 14 13 11 27 27 H 0.96698 * 114.00264 * 292.20623 * 17 15 14 28 28 H 0.96701 * 114.00421 * 175.06153 * 20 18 15 29 29 H 1.08998 * 109.88324 * 300.43946 * 21 13 11 30 30 H 1.09002 * 109.88055 * 61.44916 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1042 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 4.3149 -6.2448 -0.0323 15 6 4.8020 -7.5851 0.5784 16 1 5.8120 -7.8209 0.2433 17 8 4.7318 -7.5591 2.0055 18 6 3.7727 -8.5854 -0.0109 19 1 4.0583 -8.8832 -1.0197 20 8 3.6353 -9.7306 0.8325 21 6 2.4664 -7.7640 -0.0339 22 1 -0.4849 0.8401 0.0004 23 1 3.1244 -3.7267 -0.9039 24 1 3.1244 -3.7361 0.8761 25 1 4.6836 -6.1338 -1.0521 26 1 4.6416 -5.4068 0.5835 27 1 5.3568 -6.9480 2.4190 28 1 2.9492 -10.3494 0.5471 29 1 1.8689 -7.9934 0.8484 30 1 1.8981 -7.9918 -0.9357 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086330252.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:31 Heat of formation + Delta-G solvation = -123.661369 kcal Electronic energy + Delta-G solvation = -15810.303741 eV Core-core repulsion = 12925.320614 eV Total energy + Delta-G solvation = -2884.983128 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.071 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.13582 -38.09623 -36.18369 -35.07485 -32.44376 -30.71551 -29.15424 -27.84936 -25.50010 -23.55330 -21.22186 -19.60722 -18.15553 -17.74813 -16.97793 -16.65293 -15.93614 -15.05113 -14.84135 -14.80191 -14.45481 -14.03969 -13.65168 -13.24114 -12.94864 -12.57292 -12.38485 -12.03730 -11.83139 -11.07048 -11.05272 -11.01019 -10.80454 -10.65178 -10.28976 -9.83844 -9.42376 -9.07367 -8.54795 -8.25849 -6.52277 -6.22845 -3.94046 2.81595 3.02468 3.22320 3.23515 3.27938 3.54537 3.78283 3.87088 4.17293 4.18625 4.28181 4.81218 4.94681 4.99709 5.12153 5.18280 5.32867 5.41626 5.54241 5.59808 5.81168 5.86946 6.08781 6.31962 7.27902 7.46354 7.56925 7.59127 8.33293 8.51456 9.22051 10.84586 Molecular weight = 247.07amu Principal moments of inertia in cm(-1) A = 0.047635 B = 0.004854 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.660305 B = 5766.874062 C = 6169.006966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.146 4.146 11 C 0.549 3.451 12 O -0.513 6.513 13 N -0.618 5.618 14 C 0.069 3.931 15 C 0.099 3.901 16 H 0.083 0.917 17 O -0.538 6.538 18 C 0.100 3.900 19 H 0.086 0.914 20 O -0.542 6.542 21 C 0.080 3.920 22 H 0.269 0.731 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.378 0.622 28 H 0.379 0.621 29 H 0.078 0.922 30 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.052 -15.345 -1.104 19.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.297 4.297 11 C 0.337 3.663 12 O -0.387 6.387 13 N -0.357 5.357 14 C -0.055 4.055 15 C 0.039 3.961 16 H 0.101 0.899 17 O -0.343 6.343 18 C 0.040 3.960 19 H 0.103 0.897 20 O -0.346 6.346 21 C -0.044 4.044 22 H 0.079 0.921 23 H 0.107 0.893 24 H 0.107 0.893 25 H 0.099 0.901 26 H 0.106 0.894 27 H 0.226 0.774 28 H 0.226 0.774 29 H 0.096 0.904 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.038 -15.610 -0.881 18.580 hybrid contribution 1.991 1.494 -0.312 2.508 sum 12.028 -14.117 -1.193 18.584 Atomic orbital electron populations 1.70012 1.05972 1.27605 1.46664 1.24993 0.95025 0.99016 0.94476 0.86216 0.79239 0.81208 0.78790 1.19935 1.20773 1.19922 1.22815 0.94845 0.91610 1.59222 0.90987 1.85429 1.04834 0.96284 1.96710 1.23501 1.06567 0.94873 1.04726 1.20061 0.85672 0.85395 0.75142 1.90712 1.14925 1.85065 1.48017 1.48253 1.06174 1.05333 1.75915 1.23143 0.81618 0.98927 1.01805 1.23020 0.97751 0.92766 0.82597 0.89904 1.86650 1.64018 1.66532 1.17082 1.22927 0.93857 0.85765 0.93413 0.89672 1.86646 1.60535 1.33553 1.53895 1.22601 0.97289 0.81641 1.02837 0.92089 0.89302 0.89294 0.90148 0.89382 0.77433 0.77367 0.90377 0.91252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.30 29.55 -169.99 -5.02 16.28 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.54 -15.30 9.50 30.94 0.29 -15.00 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.02 5.16 36.00 0.19 -2.84 16 11 C 0.55 10.92 7.87 -10.99 -0.09 10.83 16 12 O -0.51 -12.30 16.19 5.56 0.09 -12.21 16 13 N -0.62 -9.23 3.32 -170.38 -0.57 -9.80 16 14 C 0.07 0.72 6.45 -2.41 -0.02 0.70 16 15 C 0.10 0.92 4.30 -24.46 -0.11 0.81 16 16 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 17 O -0.54 -6.01 13.04 -52.24 -0.68 -6.69 16 18 C 0.10 0.95 4.20 -24.89 -0.10 0.84 16 19 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 20 O -0.54 -5.45 12.96 -52.24 -0.68 -6.13 16 21 C 0.08 1.01 6.64 -3.06 -0.02 0.99 16 22 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 23 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 24 H 0.09 1.70 7.85 -51.92 -0.41 1.30 16 25 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.09 0.88 7.48 -51.93 -0.39 0.49 16 27 H 0.38 2.56 9.12 45.56 0.42 2.97 16 28 H 0.38 2.11 9.11 45.56 0.42 2.53 16 29 H 0.08 1.13 8.06 -51.93 -0.42 0.72 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 278.22 15.07 4.19 4.19 Total: -1.00 -37.82 278.22 -6.13 -43.96 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -2.04 Total: 1.34 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 0.05 Total: -1.64 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.17 Total: -35.28 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -1.27 Total: -25.02 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -37.82 -6.13 -43.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086330252.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.705 kcal (2) G-P(sol) polarization free energy of solvation -37.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds