Wall clock time and date at job start Mon Mar 30 2020 03:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99948 * 3 2 1 5 5 H 1.48497 * 109.46782 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00225 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.47422 * 125.64683 * 359.68866 * 13 11 10 15 15 C 1.55131 * 104.72363 * 155.82150 * 14 13 11 16 16 H 1.08999 * 110.90865 * 155.27622 * 15 14 13 17 17 O 1.42901 * 111.22261 * 279.17756 * 15 14 13 18 18 C 1.55162 * 101.48519 * 37.29545 * 15 14 13 19 19 H 1.08993 * 110.72142 * 82.69793 * 18 15 14 20 20 O 1.42893 * 110.87102 * 205.90153 * 18 15 14 21 21 C 1.47023 * 125.64979 * 180.02562 * 13 11 10 22 22 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 24 24 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 25 25 H 1.09003 * 110.36588 * 274.74789 * 14 13 11 26 26 H 1.09004 * 110.36868 * 37.07194 * 14 13 11 27 27 H 0.96698 * 114.00264 * 292.20623 * 17 15 14 28 28 H 0.96701 * 114.00421 * 175.06153 * 20 18 15 29 29 H 1.08998 * 109.88324 * 300.43946 * 21 13 11 30 30 H 1.09002 * 109.88055 * 61.44916 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1042 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 4.3149 -6.2448 -0.0323 15 6 4.8020 -7.5851 0.5784 16 1 5.8120 -7.8209 0.2433 17 8 4.7318 -7.5591 2.0055 18 6 3.7727 -8.5854 -0.0109 19 1 4.0583 -8.8832 -1.0197 20 8 3.6353 -9.7306 0.8325 21 6 2.4664 -7.7640 -0.0339 22 1 -0.4849 0.8401 0.0004 23 1 3.1244 -3.7267 -0.9039 24 1 3.1244 -3.7361 0.8761 25 1 4.6836 -6.1338 -1.0521 26 1 4.6416 -5.4068 0.5835 27 1 5.3568 -6.9480 2.4190 28 1 2.9492 -10.3494 0.5471 29 1 1.8689 -7.9934 0.8484 30 1 1.8981 -7.9918 -0.9357 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086330252.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:31 Heat of formation + Delta-G solvation = -156.611929 kcal Electronic energy + Delta-G solvation = -15811.732585 eV Core-core repulsion = 12925.320614 eV Total energy + Delta-G solvation = -2886.411971 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.071 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.25271 -39.32580 -36.93336 -36.14647 -34.59611 -32.04964 -30.21336 -28.98926 -27.65667 -24.59257 -22.00696 -20.94222 -19.72576 -18.81794 -18.24109 -17.71795 -17.07574 -16.89053 -16.44416 -15.93947 -15.68236 -15.42459 -14.67776 -14.55516 -14.34879 -13.95489 -13.49241 -13.38863 -13.16449 -12.86814 -12.73603 -12.63887 -11.78011 -11.76642 -11.53925 -11.13490 -11.03204 -10.88914 -10.30812 -9.74775 -8.70593 -8.35358 -6.15087 1.20663 1.43654 1.44403 1.50076 1.54657 1.99908 2.26504 2.98940 3.04139 3.18548 3.28526 3.42842 3.53859 3.83599 4.09983 4.17597 4.24509 4.39392 4.50097 4.55710 4.66364 4.73137 4.93259 5.21972 5.40222 6.18451 6.27968 6.76701 6.93011 7.04393 7.05523 8.73886 Molecular weight = 247.07amu Principal moments of inertia in cm(-1) A = 0.047635 B = 0.004854 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.660305 B = 5766.874062 C = 6169.006966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.014 3.986 3 Si 1.001 2.999 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.085 0.915 9 S -0.154 6.154 10 C -0.117 4.117 11 C 0.543 3.457 12 O -0.569 6.569 13 N -0.611 5.611 14 C 0.059 3.941 15 C 0.100 3.900 16 H 0.124 0.876 17 O -0.568 6.568 18 C 0.108 3.892 19 H 0.124 0.876 20 O -0.560 6.560 21 C 0.074 3.926 22 H 0.272 0.728 23 H 0.112 0.888 24 H 0.106 0.894 25 H 0.111 0.889 26 H 0.094 0.906 27 H 0.395 0.605 28 H 0.396 0.604 29 H 0.051 0.949 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.353 -15.676 -1.667 22.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.822 3.178 4 H -0.184 1.184 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.694 4.694 8 H 0.103 0.897 9 S 0.073 5.927 10 C -0.268 4.268 11 C 0.332 3.668 12 O -0.448 6.448 13 N -0.346 5.346 14 C -0.063 4.063 15 C 0.040 3.960 16 H 0.141 0.859 17 O -0.376 6.376 18 C 0.048 3.952 19 H 0.141 0.859 20 O -0.367 6.367 21 C -0.050 4.050 22 H 0.080 0.920 23 H 0.130 0.870 24 H 0.125 0.875 25 H 0.129 0.871 26 H 0.112 0.888 27 H 0.245 0.755 28 H 0.246 0.754 29 H 0.069 0.931 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 13.403 -15.990 -1.442 20.914 hybrid contribution 1.017 1.431 -0.118 1.759 sum 14.420 -14.559 -1.560 20.551 Atomic orbital electron populations 1.70189 1.08091 1.28744 1.47863 1.26162 0.95953 1.03395 0.93584 0.84973 0.77779 0.75467 0.79584 1.18449 1.20452 1.18593 1.23163 0.95376 0.91729 1.59178 0.89703 1.85654 1.10587 0.99412 1.97057 1.23281 1.03458 0.93561 1.06530 1.19893 0.85441 0.86124 0.75356 1.90685 1.17261 1.85803 1.51080 1.48206 1.08009 1.05201 1.73231 1.23594 0.78321 1.00337 1.04023 1.23247 0.99507 0.91571 0.81685 0.85870 1.86611 1.65178 1.67349 1.18454 1.23083 0.91630 0.85205 0.95252 0.85890 1.86603 1.61352 1.33922 1.54843 1.22830 0.99520 0.80817 1.01810 0.91954 0.87027 0.87549 0.87073 0.88814 0.75543 0.75377 0.93099 0.90804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.35 13.22 21.65 0.29 -56.07 16 2 C 0.01 0.78 5.49 84.86 0.47 1.25 16 3 Si 1.00 43.23 29.55 68.60 2.03 45.25 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 7 C -0.55 -31.23 9.50 67.96 0.65 -30.58 16 8 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 9 S -0.15 -8.73 20.57 -56.49 -1.16 -9.89 16 10 C -0.12 -4.78 5.16 71.23 0.37 -4.42 16 11 C 0.54 21.68 7.87 87.66 0.69 22.37 16 12 O -0.57 -28.38 16.19 -3.02 -0.05 -28.43 16 13 N -0.61 -17.36 3.32 -811.34 -2.70 -20.05 16 14 C 0.06 1.02 6.45 86.93 0.56 1.58 16 15 C 0.10 1.45 4.30 32.07 0.14 1.59 16 16 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 17 O -0.57 -11.26 13.04 -132.71 -1.73 -12.99 16 18 C 0.11 1.69 4.20 31.79 0.13 1.83 16 19 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 20 O -0.56 -9.88 12.96 -132.71 -1.72 -11.60 16 21 C 0.07 1.78 6.64 86.73 0.58 2.36 16 22 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 23 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 24 H 0.11 3.94 7.85 -2.39 -0.02 3.92 16 25 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.09 1.54 7.48 -2.38 -0.02 1.52 16 27 H 0.39 4.34 9.12 -74.06 -0.68 3.67 16 28 H 0.40 3.62 9.11 -74.06 -0.67 2.95 16 29 H 0.05 1.51 8.06 -2.39 -0.02 1.49 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -85.40 278.22 -1.64 -87.04 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -0.18 Total: 10.76 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 3.58 Total: -4.02 kcal Atomic # 7 Polarization: -73.71 SS G_CDS: -2.41 Total: -76.12 kcal Atomic # 8 Polarization: -49.52 SS G_CDS: -3.50 Total: -53.02 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.16 Total: -9.89 kcal Total: -85.40 -1.64 -87.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086330252.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.572 kcal (2) G-P(sol) polarization free energy of solvation -85.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds