Wall clock time and date at job start Mon Mar 30 2020 03:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 11 11 N 1.46899 * 109.47429 * 59.99659 * 9 7 2 12 12 C 1.50699 * 109.46824 * 180.02562 * 9 7 2 13 13 C 1.38705 * 120.01160 * 104.99440 * 12 9 7 14 14 O 1.35947 * 120.00881 * 0.02562 * 13 12 9 15 15 C 1.38668 * 119.98154 * 179.97438 * 13 12 9 16 16 C 1.38392 * 119.99387 * 0.02562 * 15 13 12 17 17 F 1.35092 * 120.00228 * 179.97438 * 16 15 13 18 18 C 1.38592 * 120.00454 * 0.02562 * 16 15 13 19 19 F 1.35106 * 119.98526 * 179.97438 * 18 16 15 20 20 C 1.38357 * 120.00018 * 284.71812 * 12 9 7 21 21 F 1.35099 * 119.99726 * 0.02562 * 20 12 9 22 22 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 23 23 H 1.00895 * 110.99738 * 296.04558 * 11 9 7 24 24 H 1.00899 * 110.99492 * 59.99988 * 11 9 7 25 25 H 0.96694 * 114.00065 * 89.99066 * 14 13 12 26 26 H 1.08001 * 120.00434 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8751 -0.6798 -0.8895 11 7 4.0007 -0.5024 1.2001 12 6 4.0137 -2.6150 -0.0013 13 6 4.5384 -3.1642 -1.1619 14 8 4.6001 -2.4208 -2.2984 15 6 5.0008 -4.4715 -1.1624 16 6 4.9383 -5.2279 -0.0051 17 9 5.3883 -6.5017 -0.0055 18 6 4.4130 -4.6790 1.1540 19 9 4.3516 -5.4179 2.2834 20 6 3.9568 -3.3700 1.1567 21 9 3.4505 -2.8336 2.2885 22 1 -0.4850 0.8401 0.0004 23 1 3.7313 0.4699 1.1920 24 1 3.6769 -0.9605 2.0387 25 1 5.4224 -1.9218 -2.3978 26 1 5.4090 -4.8997 -2.0660 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095717529.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:18 Heat of formation + Delta-G solvation = -140.573624 kcal Electronic energy + Delta-G solvation = -18177.653379 eV Core-core repulsion = 14614.636189 eV Total energy + Delta-G solvation = -3563.017190 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.056 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.46633 -48.86589 -48.12785 -39.55488 -36.17369 -35.05409 -31.98445 -29.94171 -29.17636 -26.18527 -23.63330 -22.80604 -20.79815 -18.80482 -18.09640 -17.34290 -17.11428 -16.46421 -16.44969 -15.64034 -15.43874 -15.06347 -14.63101 -14.42175 -14.41747 -14.25089 -13.77013 -13.21077 -12.94958 -12.45211 -11.96138 -11.65329 -11.26702 -10.95672 -10.84408 -10.62924 -10.26240 -9.66589 -8.85665 -8.56521 -8.42620 -7.66704 -6.30620 -4.35627 0.90896 1.04704 3.08316 3.19229 3.22449 3.30092 3.56338 4.13780 4.15639 4.48415 4.53996 4.72523 4.89799 5.10523 5.53761 5.68310 5.82009 5.95999 6.11345 6.21734 6.73103 6.93569 7.29918 7.72648 7.91118 8.14472 8.35409 8.73159 9.25802 10.81878 Molecular weight = 247.06amu Principal moments of inertia in cm(-1) A = 0.031664 B = 0.008430 C = 0.007502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.080694 B = 3320.856760 C = 3731.355582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.077 3.923 3 Si 0.874 3.126 4 H -0.274 1.274 5 H -0.258 1.258 6 H -0.288 1.288 7 C -0.547 4.547 8 H 0.076 0.924 9 C 0.212 3.788 10 H 0.067 0.933 11 N -0.859 5.859 12 C -0.063 4.063 13 C 0.153 3.847 14 O -0.475 6.475 15 C -0.165 4.165 16 C 0.089 3.911 17 F -0.126 7.126 18 C 0.019 3.981 19 F -0.124 7.124 20 C 0.125 3.875 21 F -0.105 7.105 22 H 0.268 0.732 23 H 0.321 0.679 24 H 0.340 0.660 25 H 0.393 0.607 26 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.222 -5.494 -1.257 12.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.127 4.127 3 Si 0.703 3.297 4 H -0.200 1.200 5 H -0.183 1.183 6 H -0.215 1.215 7 C -0.587 4.587 8 H 0.094 0.906 9 C 0.103 3.897 10 H 0.085 0.915 11 N -0.397 5.397 12 C -0.066 4.066 13 C 0.107 3.893 14 O -0.285 6.285 15 C -0.185 4.185 16 C 0.068 3.932 17 F -0.104 7.104 18 C -0.002 4.002 19 F -0.102 7.102 20 C 0.104 3.896 21 F -0.083 7.083 22 H 0.078 0.922 23 H 0.138 0.862 24 H 0.156 0.844 25 H 0.249 0.751 26 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 11.210 -5.840 -1.540 12.733 hybrid contribution -0.397 0.927 0.682 1.218 sum 10.812 -4.913 -0.858 11.907 Atomic orbital electron populations 1.69881 1.06203 1.27379 1.48592 1.24975 0.94877 0.98992 0.93901 0.86987 0.80342 0.83728 0.78666 1.20020 1.18306 1.21517 1.21455 0.88802 0.95262 1.53144 0.90593 1.18392 0.94323 0.85180 0.91766 0.91522 1.59851 1.67076 1.06188 1.06619 1.20534 0.96695 0.99306 0.90028 1.17514 0.96710 0.89478 0.85630 1.84907 1.43493 1.62907 1.37152 1.21178 1.04794 0.94827 0.97652 1.16830 1.02490 0.80719 0.93121 1.91514 1.86881 1.35055 1.96997 1.17539 1.08881 0.90126 0.83658 1.91512 1.94743 1.75842 1.48115 1.16866 0.99156 0.89261 0.84272 1.91421 1.84227 1.84910 1.47745 0.92165 0.86228 0.84388 0.75063 0.82932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.11 13.96 55.43 0.77 -25.34 15 2 C 0.08 2.13 5.47 -17.82 -0.10 2.03 15 3 Si 0.87 20.20 24.61 -169.99 -4.18 16.02 15 4 H -0.27 -6.10 7.01 56.52 0.40 -5.71 15 5 H -0.26 -5.65 6.54 56.52 0.37 -5.28 15 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 7 C -0.55 -14.83 9.23 -34.44 -0.32 -15.15 15 8 H 0.08 2.29 7.98 -52.49 -0.42 1.87 15 9 C 0.21 4.78 2.29 -70.01 -0.16 4.62 15 10 H 0.07 1.49 6.19 -51.93 -0.32 1.16 15 11 N -0.86 -18.46 9.03 -6.65 -0.06 -18.52 15 12 C -0.06 -1.25 4.91 -104.41 -0.51 -1.76 15 13 C 0.15 2.51 6.67 -39.25 -0.26 2.25 15 14 O -0.47 -7.08 12.34 -19.57 -0.24 -7.32 15 15 C -0.17 -2.33 9.96 -39.37 -0.39 -2.72 15 16 C 0.09 1.37 7.30 -39.39 -0.29 1.09 15 17 F -0.13 -1.87 17.18 2.25 0.04 -1.83 15 18 C 0.02 0.33 7.31 -39.31 -0.29 0.05 15 19 F -0.12 -2.17 17.09 2.25 0.04 -2.13 15 20 C 0.13 2.43 7.02 -39.39 -0.28 2.15 15 21 F -0.10 -2.16 14.22 2.25 0.03 -2.13 15 22 H 0.27 7.39 8.31 -40.82 -0.34 7.06 15 23 H 0.32 6.98 4.30 -39.29 -0.17 6.82 15 24 H 0.34 7.30 6.11 -39.29 -0.24 7.06 15 25 H 0.39 3.72 9.06 45.56 0.41 4.14 15 26 H 0.15 1.68 8.06 -52.49 -0.42 1.26 15 LS Contribution 239.26 15.07 3.61 3.61 Total: -1.00 -30.10 239.26 -2.92 -33.03 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -0.33 Total: 12.06 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -2.59 Total: -7.45 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.71 Total: -43.85 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: -0.24 Total: -7.32 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 0.11 Total: -6.09 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.18 Total: 16.02 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -30.10 -2.92 -33.03 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095717529.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.547 kcal (2) G-P(sol) polarization free energy of solvation -30.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds