Wall clock time and date at job start Mon Mar 30 2020 03:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 11 11 N 1.46899 * 109.47429 * 59.99659 * 9 7 2 12 12 C 1.50699 * 109.46824 * 180.02562 * 9 7 2 13 13 C 1.38705 * 120.01160 * 104.99440 * 12 9 7 14 14 O 1.35947 * 120.00881 * 0.02562 * 13 12 9 15 15 C 1.38668 * 119.98154 * 179.97438 * 13 12 9 16 16 C 1.38392 * 119.99387 * 0.02562 * 15 13 12 17 17 F 1.35092 * 120.00228 * 179.97438 * 16 15 13 18 18 C 1.38592 * 120.00454 * 0.02562 * 16 15 13 19 19 F 1.35106 * 119.98526 * 179.97438 * 18 16 15 20 20 C 1.38357 * 120.00018 * 284.71812 * 12 9 7 21 21 F 1.35099 * 119.99726 * 0.02562 * 20 12 9 22 22 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 23 23 H 1.00895 * 110.99738 * 296.04558 * 11 9 7 24 24 H 1.00899 * 110.99492 * 59.99988 * 11 9 7 25 25 H 0.96694 * 114.00065 * 89.99066 * 14 13 12 26 26 H 1.08001 * 120.00434 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8751 -0.6798 -0.8895 11 7 4.0007 -0.5024 1.2001 12 6 4.0137 -2.6150 -0.0013 13 6 4.5384 -3.1642 -1.1619 14 8 4.6001 -2.4208 -2.2984 15 6 5.0008 -4.4715 -1.1624 16 6 4.9383 -5.2279 -0.0051 17 9 5.3883 -6.5017 -0.0055 18 6 4.4130 -4.6790 1.1540 19 9 4.3516 -5.4179 2.2834 20 6 3.9568 -3.3700 1.1567 21 9 3.4505 -2.8336 2.2885 22 1 -0.4850 0.8401 0.0004 23 1 3.7313 0.4699 1.1920 24 1 3.6769 -0.9605 2.0387 25 1 5.4224 -1.9218 -2.3978 26 1 5.4090 -4.8997 -2.0660 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095717529.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:18 Heat of formation + Delta-G solvation = -164.572184 kcal Electronic energy + Delta-G solvation = -18178.694035 eV Core-core repulsion = 14614.636189 eV Total energy + Delta-G solvation = -3564.057845 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.82163 -50.24643 -49.51700 -40.87313 -37.45272 -36.77168 -34.00189 -31.34899 -30.53390 -28.10551 -25.21070 -24.13346 -22.42683 -20.08476 -19.64177 -18.90832 -18.65653 -17.93432 -17.84817 -17.08697 -16.99807 -16.50248 -16.15650 -15.89356 -15.72074 -15.66811 -15.30780 -14.92067 -14.53352 -14.14335 -13.42446 -13.35042 -12.85385 -12.67944 -12.35816 -12.12178 -11.88341 -11.53434 -10.93211 -9.95441 -9.81127 -9.41338 -8.41560 -6.51815 -0.40463 -0.28311 1.26147 1.32486 1.42388 1.98973 2.20717 2.24827 2.87597 2.92063 3.18597 3.19672 3.39505 3.62566 4.13116 4.33351 4.37655 4.64428 4.70783 4.79821 5.19091 5.34462 5.48932 5.95297 6.28033 6.47102 6.60133 6.77361 7.13950 8.74972 Molecular weight = 247.06amu Principal moments of inertia in cm(-1) A = 0.031664 B = 0.008430 C = 0.007502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.080694 B = 3320.856760 C = 3731.355582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.017 3.983 3 Si 0.940 3.060 4 H -0.259 1.259 5 H -0.233 1.233 6 H -0.291 1.291 7 C -0.552 4.552 8 H 0.026 0.974 9 C 0.219 3.781 10 H 0.075 0.925 11 N -0.848 5.848 12 C -0.096 4.096 13 C 0.166 3.834 14 O -0.482 6.482 15 C -0.140 4.140 16 C 0.104 3.896 17 F -0.117 7.117 18 C 0.009 3.991 19 F -0.128 7.128 20 C 0.105 3.895 21 F -0.122 7.122 22 H 0.270 0.730 23 H 0.320 0.680 24 H 0.339 0.661 25 H 0.419 0.581 26 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.676 -5.462 -2.484 14.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.182 4.182 3 Si 0.764 3.236 4 H -0.185 1.185 5 H -0.156 1.156 6 H -0.218 1.218 7 C -0.592 4.592 8 H 0.045 0.955 9 C 0.109 3.891 10 H 0.093 0.907 11 N -0.385 5.385 12 C -0.099 4.099 13 C 0.120 3.880 14 O -0.296 6.296 15 C -0.159 4.159 16 C 0.084 3.916 17 F -0.096 7.096 18 C -0.012 4.012 19 F -0.107 7.107 20 C 0.084 3.916 21 F -0.100 7.100 22 H 0.079 0.921 23 H 0.136 0.864 24 H 0.155 0.845 25 H 0.280 0.720 26 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 13.709 -5.818 -2.767 15.147 hybrid contribution -1.163 0.777 1.013 1.727 sum 12.546 -5.041 -1.754 13.634 Atomic orbital electron populations 1.70049 1.08352 1.28524 1.50686 1.25928 0.95643 1.03256 0.93394 0.85920 0.79744 0.78237 0.79660 1.18486 1.15600 1.21751 1.21722 0.91646 0.93347 1.52439 0.95547 1.18202 0.91145 0.87503 0.92206 0.90746 1.59837 1.66345 1.05994 1.06283 1.20476 0.99385 0.98295 0.91704 1.17536 0.95424 0.90316 0.84756 1.84848 1.45630 1.63212 1.35934 1.21452 1.02733 0.93289 0.98381 1.16864 1.01183 0.80900 0.92697 1.91546 1.86582 1.34532 1.96922 1.17612 1.09658 0.89623 0.84354 1.91495 1.94868 1.75745 1.48569 1.17070 1.00263 0.90272 0.83967 1.91363 1.84755 1.85285 1.48609 0.92101 0.86357 0.84517 0.72011 0.78717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.18 13.96 21.45 0.30 -56.88 15 2 C 0.02 0.97 5.47 84.66 0.46 1.43 15 3 Si 0.94 41.19 24.61 68.60 1.69 42.88 15 4 H -0.26 -10.71 7.01 99.48 0.70 -10.01 15 5 H -0.23 -9.16 6.54 99.48 0.65 -8.51 15 6 H -0.29 -12.78 7.11 99.48 0.71 -12.07 15 7 C -0.55 -30.62 9.23 25.60 0.24 -30.38 15 8 H 0.03 1.67 7.98 -2.91 -0.02 1.65 15 9 C 0.22 9.68 2.29 43.42 0.10 9.78 15 10 H 0.07 3.15 6.19 -2.39 -0.01 3.14 15 11 N -0.85 -35.39 9.03 -174.95 -1.58 -36.97 15 12 C -0.10 -3.70 4.91 -19.72 -0.10 -3.80 15 13 C 0.17 5.00 6.67 22.48 0.15 5.15 15 14 O -0.48 -12.70 12.34 -92.95 -1.15 -13.85 15 15 C -0.14 -3.38 9.96 22.41 0.22 -3.16 15 16 C 0.10 2.92 7.30 22.39 0.16 3.09 15 17 F -0.12 -3.10 17.18 44.97 0.77 -2.33 15 18 C 0.01 0.29 7.31 22.45 0.16 0.46 15 19 F -0.13 -4.44 17.09 44.97 0.77 -3.67 15 20 C 0.11 4.06 7.02 22.39 0.16 4.22 15 21 F -0.12 -5.15 14.22 44.97 0.64 -4.51 15 22 H 0.27 15.33 8.31 -92.70 -0.77 14.56 15 23 H 0.32 13.26 4.30 -89.70 -0.39 12.87 15 24 H 0.34 14.52 6.11 -89.69 -0.55 13.97 15 25 H 0.42 6.17 9.06 -74.06 -0.67 5.50 15 26 H 0.20 3.12 8.06 -2.91 -0.02 3.10 15 Total: -1.00 -66.97 239.26 2.62 -64.35 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: -0.38 Total: 24.19 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 1.56 Total: -13.22 kcal Atomic # 7 Polarization: -92.57 SS G_CDS: -1.28 Total: -93.85 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -1.15 Total: -13.85 kcal Atomic # 9 Polarization: -12.69 SS G_CDS: 2.18 Total: -10.51 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 1.69 Total: 42.88 kcal Total: -66.97 2.62 -64.35 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095717529.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.219 kcal (2) G-P(sol) polarization free energy of solvation -66.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds