Wall clock time and date at job start Mon Mar 30 2020 03:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86789 * 120.00374 * 2 1 4 4 H 1.48510 * 109.47381 * 240.00507 * 3 2 1 5 5 H 1.48502 * 109.47282 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47307 * 120.00126 * 3 2 1 7 7 C 1.37881 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99946 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99917 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47068 * 180.02562 * 9 7 2 11 11 C 1.34655 * 119.62428 * 90.00308 * 10 9 7 12 12 O 1.22063 * 119.98962 * 359.97438 * 11 10 9 13 13 C 1.40541 * 120.02612 * 179.72676 * 11 10 9 14 14 C 1.36396 * 119.30528 * 0.24769 * 13 11 10 15 15 C 1.40198 * 119.26727 * 0.02562 * 14 13 11 16 16 C 1.35350 * 119.94516 * 359.97438 * 15 14 13 17 17 C 1.50707 * 119.64918 * 180.02562 * 16 15 14 18 18 F 1.39898 * 109.46757 * 0.02562 * 17 16 15 19 19 F 1.39897 * 109.46928 * 120.00088 * 17 16 15 20 20 F 1.39903 * 109.47044 * 240.00552 * 17 16 15 21 21 H 0.96997 * 119.99806 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47361 * 59.99965 * 9 7 2 23 23 H 1.09005 * 109.47104 * 300.00125 * 9 7 2 24 24 H 1.07994 * 120.34688 * 180.23410 * 13 11 10 25 25 H 1.08003 * 120.36913 * 180.02562 * 14 13 11 26 26 H 1.07992 * 120.02756 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6128 -0.0005 11 6 2.6354 -4.1187 1.1700 12 8 2.2345 -3.6492 2.2230 13 6 3.5442 -5.1907 1.1799 14 6 3.9831 -5.7048 -0.0048 15 6 3.5181 -5.1517 -1.2062 16 6 2.6430 -4.1195 -1.1807 17 6 2.1470 -3.5304 -2.4762 18 9 2.7273 -4.2125 -3.5509 19 9 0.7551 -3.6548 -2.5423 20 9 2.4978 -2.1775 -2.5378 21 1 -0.4850 0.8400 0.0004 22 1 0.6239 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8897 24 1 3.8915 -5.6030 2.1156 25 1 4.6812 -6.5288 -0.0173 26 1 3.8573 -5.5494 -2.1512 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156736494.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:20 Heat of formation + Delta-G solvation = -146.142393 kcal Electronic energy + Delta-G solvation = -18641.653718 eV Core-core repulsion = 15078.395049 eV Total energy + Delta-G solvation = -3563.258670 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.88988 -47.48392 -47.13970 -40.77380 -36.50671 -34.56486 -32.55625 -30.50796 -27.77931 -26.16718 -23.97779 -22.39655 -21.71355 -18.45224 -18.13359 -18.06480 -16.89856 -16.69073 -16.23521 -15.00660 -14.80326 -14.76782 -14.18796 -14.09331 -13.85410 -13.70105 -13.39713 -13.32734 -12.69779 -12.41694 -12.10726 -11.80469 -11.63809 -11.28359 -11.10873 -10.72337 -10.35814 -10.22939 -9.34969 -9.24280 -8.58449 -7.61588 -6.21618 -4.27902 0.89130 2.05723 2.63961 3.27296 3.30322 3.30470 3.39531 3.84977 3.99942 4.32739 4.42698 4.70552 4.97402 5.12659 5.21111 5.34619 5.50469 6.07608 6.33525 6.38449 6.62989 6.88143 7.07299 7.68683 7.69868 7.87319 8.59015 8.72310 9.36721 10.87468 Molecular weight = 247.06amu Principal moments of inertia in cm(-1) A = 0.021810 B = 0.011118 C = 0.008635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.482129 B = 2517.823821 C = 3241.939297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.069 3.931 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.530 4.530 8 H 0.063 0.937 9 C 0.198 3.802 10 N -0.452 5.452 11 C 0.509 3.491 12 O -0.536 6.536 13 C -0.224 4.224 14 C -0.031 4.031 15 C -0.204 4.204 16 C 0.095 3.905 17 C 0.509 3.491 18 F -0.174 7.174 19 F -0.167 7.167 20 F -0.142 7.142 21 H 0.268 0.732 22 H 0.059 0.941 23 H 0.068 0.932 24 H 0.148 0.852 25 H 0.138 0.862 26 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.221 -10.197 -5.915 13.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.135 4.135 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.568 4.568 8 H 0.081 0.919 9 C 0.081 3.919 10 N -0.159 5.159 11 C 0.309 3.691 12 O -0.417 6.417 13 C -0.246 4.246 14 C -0.053 4.053 15 C -0.229 4.229 16 C -0.020 4.020 17 C 0.454 3.546 18 F -0.156 7.156 19 F -0.148 7.148 20 F -0.122 7.122 21 H 0.078 0.922 22 H 0.077 0.923 23 H 0.086 0.914 24 H 0.165 0.835 25 H 0.156 0.844 26 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.692 -9.665 -5.222 12.372 hybrid contribution 0.385 0.983 -0.258 1.087 sum 6.077 -8.682 -5.480 11.930 Atomic orbital electron populations 1.69912 1.06046 1.27731 1.48864 1.24869 0.94949 0.99375 0.94262 0.86430 0.79521 0.81931 0.78930 1.19838 1.20896 1.19931 1.21047 0.93272 0.89285 1.53236 0.91912 1.20386 0.87920 0.82010 1.01630 1.46016 1.36425 1.29445 1.04020 1.17038 0.83955 0.85013 0.83045 1.90966 1.59232 1.62615 1.28867 1.22356 1.02641 0.99785 0.99859 1.21210 0.95706 0.97051 0.91317 1.20427 1.02582 0.99286 1.00644 1.20407 0.98410 0.96314 0.86870 1.18010 0.75775 0.77536 0.83293 1.93153 1.84400 1.80086 1.57947 1.93207 1.29573 1.95662 1.96401 1.93413 1.91366 1.31134 1.96326 0.92211 0.92323 0.91448 0.83451 0.84438 0.83167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.78 13.29 55.43 0.74 -25.04 15 2 C 0.07 1.94 5.46 -17.82 -0.10 1.85 15 3 Si 0.91 21.67 29.54 -169.99 -5.02 16.65 15 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 15 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 15 7 C -0.53 -14.76 7.76 -34.44 -0.27 -15.02 15 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 15 9 C 0.20 5.13 4.43 -5.19 -0.02 5.10 15 10 N -0.45 -9.97 2.57 -116.44 -0.30 -10.26 15 11 C 0.51 11.13 7.40 -15.45 -0.11 11.02 15 12 O -0.54 -13.93 16.64 4.86 0.08 -13.85 15 13 C -0.22 -3.61 9.99 -39.38 -0.39 -4.00 15 14 C -0.03 -0.40 10.10 -39.51 -0.40 -0.80 15 15 C -0.20 -2.86 9.39 -39.88 -0.37 -3.23 15 16 C 0.09 1.72 6.14 -81.88 -0.50 1.22 15 17 C 0.51 9.13 2.80 36.01 0.10 9.23 15 18 F -0.17 -2.56 15.90 2.25 0.04 -2.53 15 19 F -0.17 -3.16 15.19 2.25 0.03 -3.12 15 20 F -0.14 -2.95 15.01 2.25 0.03 -2.91 15 21 H 0.27 7.35 8.31 -40.82 -0.34 7.01 15 22 H 0.06 1.52 5.23 -51.93 -0.27 1.25 15 23 H 0.07 1.94 7.39 -51.93 -0.38 1.56 15 24 H 0.15 2.03 8.06 -52.49 -0.42 1.61 15 25 H 0.14 1.16 8.06 -52.48 -0.42 0.74 15 26 H 0.15 1.63 7.06 -52.49 -0.37 1.25 15 LS Contribution 244.84 15.07 3.69 3.69 Total: -1.00 -31.45 244.84 -4.20 -35.65 By element: Atomic # 1 Polarization: -2.20 SS G_CDS: -1.42 Total: -3.62 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -2.07 Total: 5.36 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: 0.44 Total: -35.31 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.08 Total: -13.85 kcal Atomic # 9 Polarization: -8.67 SS G_CDS: 0.10 Total: -8.56 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -31.45 -4.20 -35.65 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156736494.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.494 kcal (2) G-P(sol) polarization free energy of solvation -31.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds