Wall clock time and date at job start Mon Mar 30 2020 03:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86789 * 120.00374 * 2 1 4 4 H 1.48510 * 109.47381 * 240.00507 * 3 2 1 5 5 H 1.48502 * 109.47282 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47307 * 120.00126 * 3 2 1 7 7 C 1.37881 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99946 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99917 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47068 * 180.02562 * 9 7 2 11 11 C 1.34655 * 119.62428 * 90.00308 * 10 9 7 12 12 O 1.22063 * 119.98962 * 359.97438 * 11 10 9 13 13 C 1.40541 * 120.02612 * 179.72676 * 11 10 9 14 14 C 1.36396 * 119.30528 * 0.24769 * 13 11 10 15 15 C 1.40198 * 119.26727 * 0.02562 * 14 13 11 16 16 C 1.35350 * 119.94516 * 359.97438 * 15 14 13 17 17 C 1.50707 * 119.64918 * 180.02562 * 16 15 14 18 18 F 1.39898 * 109.46757 * 0.02562 * 17 16 15 19 19 F 1.39897 * 109.46928 * 120.00088 * 17 16 15 20 20 F 1.39903 * 109.47044 * 240.00552 * 17 16 15 21 21 H 0.96997 * 119.99806 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47361 * 59.99965 * 9 7 2 23 23 H 1.09005 * 109.47104 * 300.00125 * 9 7 2 24 24 H 1.07994 * 120.34688 * 180.23410 * 13 11 10 25 25 H 1.08003 * 120.36913 * 180.02562 * 14 13 11 26 26 H 1.07992 * 120.02756 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6128 -0.0005 11 6 2.6354 -4.1187 1.1700 12 8 2.2345 -3.6492 2.2230 13 6 3.5442 -5.1907 1.1799 14 6 3.9831 -5.7048 -0.0048 15 6 3.5181 -5.1517 -1.2062 16 6 2.6430 -4.1195 -1.1807 17 6 2.1470 -3.5304 -2.4762 18 9 2.7273 -4.2125 -3.5509 19 9 0.7551 -3.6548 -2.5423 20 9 2.4978 -2.1775 -2.5378 21 1 -0.4850 0.8400 0.0004 22 1 0.6239 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8897 24 1 3.8915 -5.6030 2.1156 25 1 4.6812 -6.5288 -0.0173 26 1 3.8573 -5.5494 -2.1512 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156736494.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:19 Heat of formation + Delta-G solvation = -167.191402 kcal Electronic energy + Delta-G solvation = -18642.566472 eV Core-core repulsion = 15078.395049 eV Total energy + Delta-G solvation = -3564.171423 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -51.30663 -48.84741 -48.64673 -42.29450 -38.12412 -36.20675 -34.48468 -31.96937 -29.72479 -27.53310 -25.83492 -23.86324 -23.32163 -19.89158 -19.58970 -19.48554 -18.93713 -18.24358 -17.67299 -16.66028 -16.49592 -16.42118 -15.64891 -15.55142 -15.26864 -15.18493 -14.89205 -14.83266 -14.41747 -14.09583 -13.62976 -13.43632 -13.22099 -12.92481 -12.88277 -12.58912 -12.33700 -11.97392 -11.01076 -10.92891 -10.73272 -9.15132 -8.34725 -6.49127 -0.42228 0.73138 1.24844 1.34042 1.37796 1.45067 1.80088 2.31573 2.45579 2.56332 2.97514 3.03880 3.26950 3.73429 3.97656 4.17646 4.29873 4.68910 4.86808 4.94932 5.03584 5.15789 5.44074 5.55387 5.76267 6.11698 6.53300 7.01787 7.20105 8.74396 Molecular weight = 247.06amu Principal moments of inertia in cm(-1) A = 0.021810 B = 0.011118 C = 0.008635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.482129 B = 2517.823821 C = 3241.939297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.017 3.983 3 Si 0.968 3.032 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.055 0.945 9 C 0.216 3.784 10 N -0.469 5.469 11 C 0.485 3.515 12 O -0.605 6.605 13 C -0.229 4.229 14 C 0.002 3.998 15 C -0.157 4.157 16 C 0.047 3.953 17 C 0.511 3.489 18 F -0.150 7.150 19 F -0.179 7.179 20 F -0.164 7.164 21 H 0.272 0.728 22 H 0.053 0.947 23 H 0.021 0.979 24 H 0.172 0.828 25 H 0.205 0.795 26 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.942 -12.066 -7.332 16.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.184 4.184 3 Si 0.792 3.208 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.577 4.577 8 H 0.073 0.927 9 C 0.096 3.904 10 N -0.177 5.177 11 C 0.289 3.711 12 O -0.491 6.491 13 C -0.251 4.251 14 C -0.019 4.019 15 C -0.181 4.181 16 C -0.064 4.064 17 C 0.456 3.544 18 F -0.131 7.131 19 F -0.160 7.160 20 F -0.146 7.146 21 H 0.081 0.919 22 H 0.071 0.929 23 H 0.039 0.961 24 H 0.190 0.810 25 H 0.222 0.778 26 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 8.445 -11.581 -6.705 15.824 hybrid contribution -0.382 1.369 0.092 1.425 sum 8.063 -10.212 -6.613 14.595 Atomic orbital electron populations 1.70022 1.07502 1.28733 1.49763 1.25785 0.95840 1.02983 0.93783 0.85451 0.78453 0.77769 0.79172 1.18457 1.19790 1.19967 1.21232 0.92942 0.90572 1.52972 0.92722 1.19759 0.88336 0.83352 0.98916 1.45716 1.36909 1.29304 1.05758 1.18056 0.84670 0.86217 0.82113 1.90914 1.62097 1.65184 1.30930 1.22503 1.01637 0.98184 1.02795 1.21900 0.94275 0.96840 0.88844 1.21231 0.97998 0.95509 1.03328 1.20742 1.01411 0.98871 0.85342 1.18025 0.75378 0.76783 0.84190 1.93189 1.83865 1.79307 1.56785 1.93179 1.30705 1.95618 1.96501 1.93356 1.91504 1.33188 1.96509 0.91943 0.92931 0.96107 0.81036 0.77792 0.78558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.58 13.29 21.45 0.28 -55.29 15 2 C 0.02 0.95 5.46 84.65 0.46 1.41 15 3 Si 0.97 45.14 29.54 68.60 2.03 47.16 15 4 H -0.26 -11.49 7.11 99.48 0.71 -10.79 15 5 H -0.27 -12.17 7.11 99.48 0.71 -11.46 15 6 H -0.27 -12.71 7.11 99.48 0.71 -12.01 15 7 C -0.54 -31.25 7.76 25.60 0.20 -31.06 15 8 H 0.05 3.17 7.81 -2.91 -0.02 3.14 15 9 C 0.22 11.87 4.43 85.63 0.38 12.25 15 10 N -0.47 -21.13 2.57 -640.42 -1.65 -22.78 15 11 C 0.49 21.62 7.40 84.82 0.63 22.24 15 12 O -0.60 -33.33 16.64 -5.52 -0.09 -33.42 15 13 C -0.23 -6.74 9.99 22.40 0.22 -6.52 15 14 C 0.00 0.05 10.10 22.32 0.23 0.27 15 15 C -0.16 -3.56 9.39 22.08 0.21 -3.36 15 16 C 0.05 1.64 6.14 41.29 0.25 1.89 15 17 C 0.51 17.91 2.80 71.24 0.20 18.11 15 18 F -0.15 -3.96 15.90 44.97 0.72 -3.25 15 19 F -0.18 -6.85 15.19 44.97 0.68 -6.17 15 20 F -0.16 -6.91 15.01 44.97 0.68 -6.23 15 21 H 0.27 15.32 8.31 -92.71 -0.77 14.55 15 22 H 0.05 2.90 5.23 -2.39 -0.01 2.89 15 23 H 0.02 1.31 7.39 -2.38 -0.02 1.29 15 24 H 0.17 4.16 8.06 -2.91 -0.02 4.14 15 25 H 0.21 1.48 8.06 -2.91 -0.02 1.45 15 26 H 0.20 2.74 7.06 -2.91 -0.02 2.72 15 Total: -1.00 -75.46 244.84 6.66 -68.80 By element: Atomic # 1 Polarization: -5.31 SS G_CDS: 1.23 Total: -4.08 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: 2.78 Total: 15.25 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -1.36 Total: -78.07 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -0.09 Total: -33.42 kcal Atomic # 9 Polarization: -17.72 SS G_CDS: 2.07 Total: -15.65 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -75.46 6.66 -68.80 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156736494.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.387 kcal (2) G-P(sol) polarization free energy of solvation -75.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds