Wall clock time and date at job start Mon Mar 30 2020 03:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31392 * 1 3 3 Si 1.86805 * 120.00230 * 2 1 4 4 H 1.48496 * 109.47376 * 270.00263 * 3 2 1 5 5 H 1.48502 * 109.46747 * 30.00491 * 3 2 1 6 6 H 1.48498 * 109.46933 * 150.00092 * 3 2 1 7 7 C 1.38926 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00378 * 199.89682 * 7 2 1 9 9 N 1.37143 * 119.99477 * 19.89598 * 7 2 1 10 10 C 1.34334 * 123.80501 * 33.87449 * 9 7 2 11 11 O 1.21270 * 126.42977 * 359.96477 * 10 9 7 12 12 C 1.51395 * 107.14447 * 179.97438 * 10 9 7 13 13 C 1.51178 * 103.98041 * 0.02562 * 12 10 9 14 14 C 1.37209 * 132.75567 * 180.02562 * 13 12 10 15 15 C 1.39922 * 119.79012 * 179.73691 * 14 13 12 16 16 C 1.47494 * 120.23643 * 180.25916 * 15 14 13 17 17 O 1.21502 * 120.00252 * 0.25283 * 16 15 14 18 18 O 1.34754 * 119.99962 * 180.25323 * 16 15 14 19 19 C 1.39834 * 119.52422 * 0.51155 * 15 14 13 20 20 C 1.37446 * 120.23133 * 359.46610 * 19 15 14 21 21 C 1.39029 * 123.79927 * 213.86805 * 9 7 2 22 22 H 0.97002 * 119.99756 * 359.97438 * 1 2 3 23 23 H 1.08994 * 110.52966 * 241.37871 * 12 10 9 24 24 H 1.09000 * 110.64244 * 118.68347 * 12 10 9 25 25 H 1.08001 * 120.10220 * 359.97438 * 14 13 12 26 26 H 0.96701 * 116.99585 * 179.97438 * 18 16 15 27 27 H 1.07997 * 119.88335 * 179.74977 * 19 15 14 28 28 H 1.07990 * 119.83726 * 180.29662 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6526 0.7002 6 1 3.5455 1.4401 0.7000 7 6 2.0086 -1.2031 -0.0005 8 1 3.0402 -1.2312 0.3177 9 7 1.3842 -2.3551 -0.4053 10 6 0.4487 -2.3995 -1.3683 11 8 0.0263 -1.4584 -2.0059 12 6 0.0203 -3.8448 -1.5080 13 6 0.8576 -4.5748 -0.4825 14 6 0.9411 -5.8946 -0.1170 15 6 1.8350 -6.2826 0.8871 16 6 1.9369 -7.6996 1.2838 17 8 1.2465 -8.5353 0.7350 18 8 2.7957 -8.0672 2.2550 19 6 2.6271 -5.3167 1.5154 20 6 2.5362 -3.9972 1.1416 21 6 1.6483 -3.6087 0.1348 22 1 -0.4850 0.8401 0.0004 23 1 0.2373 -4.2126 -2.5109 24 1 -1.0406 -3.9547 -1.2830 25 1 0.3215 -6.6322 -0.6054 26 1 2.8269 -9.0070 2.4807 27 1 3.3161 -5.6092 2.2940 28 1 3.1544 -3.2572 1.6278 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225600482.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:50 Heat of formation + Delta-G solvation = -84.523138 kcal Electronic energy + Delta-G solvation = -17188.855291 eV Core-core repulsion = 14170.125373 eV Total energy + Delta-G solvation = -3018.729918 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.068 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.68967 -39.70169 -37.27975 -35.79424 -34.84815 -33.23898 -31.42493 -29.47913 -27.57911 -25.35769 -23.59396 -21.33643 -20.59934 -20.31443 -17.77203 -17.50339 -16.71221 -16.09619 -15.40441 -15.23611 -14.90832 -14.52001 -13.99672 -13.60399 -13.19445 -12.88181 -12.55696 -12.30420 -12.15599 -12.05082 -11.61826 -11.35406 -11.17591 -10.96078 -10.52987 -10.41222 -10.26190 -9.93029 -9.03951 -8.60132 -8.43837 -7.25067 -6.60264 -4.32004 1.17559 1.90276 2.84132 3.08024 3.14997 3.17022 3.35268 3.71804 3.91069 4.38595 4.48196 4.93353 4.97543 5.25374 5.39463 5.47472 5.71221 5.82639 6.04149 6.08175 6.29016 6.47736 6.63736 6.75463 6.82086 6.91945 7.14623 7.28744 7.68060 8.20238 8.29543 8.54779 8.96256 9.56489 10.44405 Molecular weight = 247.07amu Principal moments of inertia in cm(-1) A = 0.039307 B = 0.006287 C = 0.005555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.177528 B = 4452.649418 C = 5039.728305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.061 3.939 3 Si 0.930 3.070 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.374 4.374 8 H 0.102 0.898 9 N -0.370 5.370 10 C 0.498 3.502 11 O -0.475 6.475 12 C -0.110 4.110 13 C -0.196 4.196 14 C 0.010 3.990 15 C -0.217 4.217 16 C 0.536 3.464 17 O -0.538 6.538 18 O -0.518 6.518 19 C -0.019 4.019 20 C -0.175 4.175 21 C 0.207 3.793 22 H 0.277 0.723 23 H 0.106 0.894 24 H 0.107 0.893 25 H 0.128 0.872 26 H 0.405 0.595 27 H 0.130 0.870 28 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.156 -8.886 2.858 10.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.153 4.153 3 Si 0.755 3.245 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.500 4.500 8 H 0.119 0.881 9 N -0.071 5.071 10 C 0.288 3.712 11 O -0.348 6.348 12 C -0.150 4.150 13 C -0.200 4.200 14 C -0.009 4.009 15 C -0.220 4.220 16 C 0.384 3.616 17 O -0.430 6.430 18 O -0.329 6.329 19 C -0.038 4.038 20 C -0.197 4.197 21 C 0.098 3.902 22 H 0.087 0.913 23 H 0.124 0.876 24 H 0.125 0.875 25 H 0.146 0.854 26 H 0.263 0.737 27 H 0.148 0.852 28 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.493 -7.751 2.175 8.776 hybrid contribution 0.335 0.176 0.306 0.487 sum 3.828 -7.575 2.481 8.843 Atomic orbital electron populations 1.69899 1.06724 1.29026 1.38664 1.25394 0.95155 1.00356 0.94347 0.85901 0.79354 0.80376 0.78840 1.19772 1.20595 1.19094 1.19445 0.96664 0.83575 1.50280 0.88058 1.41780 1.33113 1.04663 1.27513 1.20246 0.81133 0.89534 0.80289 1.90608 1.55921 1.41925 1.46364 1.20991 1.00929 0.93966 0.99126 1.19623 1.03437 0.93201 1.03757 1.19974 0.94281 0.93688 0.92977 1.18339 1.08103 0.89099 1.06507 1.20878 0.75566 0.89564 0.75638 1.90828 1.44173 1.53556 1.54463 1.84598 1.60370 1.33959 1.54020 1.20917 0.95297 0.91385 0.96217 1.20182 1.03140 0.95903 1.00444 1.18958 0.93054 0.86829 0.91350 0.91298 0.87595 0.87468 0.85385 0.73750 0.85175 0.85430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.69 11.23 55.49 0.62 -22.07 15 2 C 0.06 1.61 4.76 -17.48 -0.08 1.52 15 3 Si 0.93 20.03 29.60 -169.99 -5.03 15.00 15 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 15 6 H -0.27 -5.44 7.11 56.52 0.40 -5.04 15 7 C -0.37 -9.65 9.49 -14.92 -0.14 -9.80 15 8 H 0.10 2.45 7.91 -52.49 -0.42 2.03 15 9 N -0.37 -9.14 2.79 -58.73 -0.16 -9.30 15 10 C 0.50 12.30 7.49 -10.84 -0.08 12.22 15 11 O -0.47 -13.27 15.33 5.57 0.09 -13.18 15 12 C -0.11 -2.09 6.88 -28.46 -0.20 -2.29 15 13 C -0.20 -3.72 6.34 -104.38 -0.66 -4.38 15 14 C 0.01 0.17 9.58 -39.33 -0.38 -0.21 15 15 C -0.22 -3.58 5.88 -104.90 -0.62 -4.19 15 16 C 0.54 8.21 8.27 34.50 0.29 8.49 15 17 O -0.54 -9.45 17.14 -19.27 -0.33 -9.78 15 18 O -0.52 -6.05 12.68 -40.64 -0.52 -6.57 15 19 C -0.02 -0.30 9.59 -39.27 -0.38 -0.67 15 20 C -0.17 -3.21 9.76 -39.31 -0.38 -3.59 15 21 C 0.21 4.37 6.64 -83.65 -0.56 3.82 15 22 H 0.28 7.28 8.31 -40.82 -0.34 6.95 15 23 H 0.11 1.73 8.14 -51.93 -0.42 1.30 15 24 H 0.11 1.87 8.14 -51.93 -0.42 1.45 15 25 H 0.13 2.01 7.66 -52.49 -0.40 1.60 15 26 H 0.41 2.75 9.11 45.56 0.42 3.16 15 27 H 0.13 1.73 7.61 -52.49 -0.40 1.33 15 28 H 0.13 2.23 8.03 -52.49 -0.42 1.81 15 LS Contribution 259.68 15.07 3.91 3.91 Total: -1.00 -31.76 259.68 -5.81 -37.57 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -1.20 Total: 3.50 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -3.19 Total: 0.92 kcal Atomic # 7 Polarization: -31.82 SS G_CDS: 0.46 Total: -31.36 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.76 Total: -29.54 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.03 Total: 15.00 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.76 -5.81 -37.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225600482.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.952 kcal (2) G-P(sol) polarization free energy of solvation -31.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds