Wall clock time and date at job start Mon Mar 30 2020 03:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31392 * 1 3 3 Si 1.86805 * 120.00230 * 2 1 4 4 H 1.48496 * 109.47376 * 270.00263 * 3 2 1 5 5 H 1.48502 * 109.46747 * 30.00491 * 3 2 1 6 6 H 1.48498 * 109.46933 * 150.00092 * 3 2 1 7 7 C 1.38926 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00378 * 199.89682 * 7 2 1 9 9 N 1.37143 * 119.99477 * 19.89598 * 7 2 1 10 10 C 1.34334 * 123.80501 * 33.87449 * 9 7 2 11 11 O 1.21270 * 126.42977 * 359.96477 * 10 9 7 12 12 C 1.51395 * 107.14447 * 179.97438 * 10 9 7 13 13 C 1.51178 * 103.98041 * 0.02562 * 12 10 9 14 14 C 1.37209 * 132.75567 * 180.02562 * 13 12 10 15 15 C 1.39922 * 119.79012 * 179.73691 * 14 13 12 16 16 C 1.47494 * 120.23643 * 180.25916 * 15 14 13 17 17 O 1.21502 * 120.00252 * 0.25283 * 16 15 14 18 18 O 1.34754 * 119.99962 * 180.25323 * 16 15 14 19 19 C 1.39834 * 119.52422 * 0.51155 * 15 14 13 20 20 C 1.37446 * 120.23133 * 359.46610 * 19 15 14 21 21 C 1.39029 * 123.79927 * 213.86805 * 9 7 2 22 22 H 0.97002 * 119.99756 * 359.97438 * 1 2 3 23 23 H 1.08994 * 110.52966 * 241.37871 * 12 10 9 24 24 H 1.09000 * 110.64244 * 118.68347 * 12 10 9 25 25 H 1.08001 * 120.10220 * 359.97438 * 14 13 12 26 26 H 0.96701 * 116.99585 * 179.97438 * 18 16 15 27 27 H 1.07997 * 119.88335 * 179.74977 * 19 15 14 28 28 H 1.07990 * 119.83726 * 180.29662 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6526 0.7002 6 1 3.5455 1.4401 0.7000 7 6 2.0086 -1.2031 -0.0005 8 1 3.0402 -1.2312 0.3177 9 7 1.3842 -2.3551 -0.4053 10 6 0.4487 -2.3995 -1.3683 11 8 0.0263 -1.4584 -2.0059 12 6 0.0203 -3.8448 -1.5080 13 6 0.8576 -4.5748 -0.4825 14 6 0.9411 -5.8946 -0.1170 15 6 1.8350 -6.2826 0.8871 16 6 1.9369 -7.6996 1.2838 17 8 1.2465 -8.5353 0.7350 18 8 2.7957 -8.0672 2.2550 19 6 2.6271 -5.3167 1.5154 20 6 2.5362 -3.9972 1.1416 21 6 1.6483 -3.6087 0.1348 22 1 -0.4850 0.8401 0.0004 23 1 0.2373 -4.2126 -2.5109 24 1 -1.0406 -3.9547 -1.2830 25 1 0.3215 -6.6322 -0.6054 26 1 2.8269 -9.0070 2.4807 27 1 3.3161 -5.6092 2.2940 28 1 3.1544 -3.2572 1.6278 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225600482.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:50 Heat of formation + Delta-G solvation = -105.847211 kcal Electronic energy + Delta-G solvation = -17189.779972 eV Core-core repulsion = 14170.125373 eV Total energy + Delta-G solvation = -3019.654599 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.068 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.27131 -40.96775 -38.86770 -36.94613 -36.55962 -34.96540 -33.05075 -31.01868 -29.10109 -27.11603 -25.02112 -22.81882 -22.07103 -21.90432 -19.30828 -18.84626 -18.07155 -17.79046 -17.04851 -16.64955 -16.43488 -16.19764 -15.41025 -15.11569 -14.70608 -14.46552 -13.97266 -13.86582 -13.68697 -13.61576 -13.28725 -12.91936 -12.74360 -12.45063 -12.14603 -11.83582 -11.63286 -11.58566 -10.85195 -10.39026 -9.83466 -8.94849 -8.46667 -6.27189 -0.23856 0.47203 1.34957 1.41418 1.46128 1.50664 2.06511 2.21471 2.23429 2.77001 2.84592 3.17041 3.48104 3.66283 3.99676 4.21861 4.33616 4.39601 4.59194 4.67416 4.85958 5.08116 5.21693 5.34788 5.37449 5.45307 5.70621 5.74224 5.95738 6.51740 6.74835 7.13716 7.14608 7.79300 8.57227 Molecular weight = 247.07amu Principal moments of inertia in cm(-1) A = 0.039307 B = 0.006287 C = 0.005555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.177528 B = 4452.649418 C = 5039.728305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.009 3.991 3 Si 0.994 3.006 4 H -0.281 1.281 5 H -0.277 1.277 6 H -0.245 1.245 7 C -0.393 4.393 8 H 0.107 0.893 9 N -0.397 5.397 10 C 0.472 3.528 11 O -0.533 6.533 12 C -0.098 4.098 13 C -0.189 4.189 14 C 0.010 3.990 15 C -0.202 4.202 16 C 0.547 3.453 17 O -0.557 6.557 18 O -0.504 6.504 19 C -0.005 4.005 20 C -0.174 4.174 21 C 0.172 3.828 22 H 0.272 0.728 23 H 0.134 0.866 24 H 0.122 0.878 25 H 0.148 0.852 26 H 0.431 0.569 27 H 0.166 0.834 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.691 -11.647 4.243 13.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.199 4.199 3 Si 0.816 3.184 4 H -0.208 1.208 5 H -0.202 1.202 6 H -0.168 1.168 7 C -0.519 4.519 8 H 0.125 0.875 9 N -0.101 5.101 10 C 0.264 3.736 11 O -0.411 6.411 12 C -0.137 4.137 13 C -0.193 4.193 14 C -0.009 4.009 15 C -0.205 4.205 16 C 0.395 3.605 17 O -0.451 6.451 18 O -0.318 6.318 19 C -0.024 4.024 20 C -0.196 4.196 21 C 0.068 3.932 22 H 0.081 0.919 23 H 0.152 0.848 24 H 0.140 0.860 25 H 0.165 0.835 26 H 0.293 0.707 27 H 0.184 0.816 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.091 -10.622 3.631 12.326 hybrid contribution -0.017 0.584 0.044 0.586 sum 5.074 -10.038 3.675 11.832 Atomic orbital electron populations 1.70018 1.08378 1.29193 1.41642 1.26362 0.95819 1.03737 0.94010 0.84947 0.78920 0.76254 0.78286 1.20751 1.20248 1.16830 1.19754 0.97098 0.84715 1.50312 0.87506 1.41898 1.34138 1.05435 1.28605 1.21090 0.81311 0.91236 0.79970 1.90542 1.58117 1.43954 1.48481 1.20935 1.01587 0.90414 1.00805 1.19725 1.02777 0.93574 1.03184 1.20182 0.94560 0.93042 0.93090 1.18699 1.06446 0.90389 1.05008 1.20501 0.75587 0.88550 0.75899 1.90849 1.45033 1.53921 1.55281 1.84523 1.58585 1.36472 1.52179 1.21226 0.95080 0.89899 0.96200 1.20443 1.02318 0.97269 0.99570 1.19380 0.94700 0.85933 0.93144 0.91910 0.84794 0.86011 0.83468 0.70697 0.81615 0.84992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -50.61 11.23 21.66 0.24 -50.36 15 2 C 0.01 0.49 4.76 84.92 0.40 0.89 15 3 Si 0.99 42.46 29.60 68.60 2.03 44.49 15 4 H -0.28 -12.28 7.11 99.48 0.71 -11.58 15 5 H -0.28 -11.50 7.11 99.48 0.71 -10.80 15 6 H -0.25 -9.44 7.11 99.48 0.71 -8.74 15 7 C -0.39 -20.97 9.49 84.03 0.80 -20.18 15 8 H 0.11 5.28 7.91 -2.91 -0.02 5.26 15 9 N -0.40 -20.17 2.79 -458.38 -1.28 -21.45 15 10 C 0.47 24.26 7.49 87.95 0.66 24.92 15 11 O -0.53 -31.60 15.33 -3.00 -0.05 -31.65 15 12 C -0.10 -3.70 6.88 29.47 0.20 -3.50 15 13 C -0.19 -6.88 6.34 -19.71 -0.12 -7.00 15 14 C 0.01 0.31 9.58 22.44 0.21 0.53 15 15 C -0.20 -5.81 5.88 -20.04 -0.12 -5.93 15 16 C 0.55 14.06 8.27 70.26 0.58 14.64 15 17 O -0.56 -17.14 17.14 19.83 0.34 -16.80 15 18 O -0.50 -8.88 12.68 -56.65 -0.72 -9.60 15 19 C -0.01 -0.14 9.59 22.47 0.22 0.07 15 20 C -0.17 -6.05 9.76 22.45 0.22 -5.83 15 21 C 0.17 7.21 6.64 38.61 0.26 7.47 15 22 H 0.27 15.20 8.31 -92.71 -0.77 14.43 15 23 H 0.13 4.22 8.14 -2.39 -0.02 4.20 15 24 H 0.12 4.19 8.14 -2.39 -0.02 4.17 15 25 H 0.15 4.04 7.66 -2.91 -0.02 4.02 15 26 H 0.43 3.35 9.11 -74.06 -0.67 2.68 15 27 H 0.17 3.46 7.61 -2.91 -0.02 3.44 15 28 H 0.13 4.43 8.03 -2.92 -0.02 4.41 15 Total: -1.00 -72.22 259.68 4.42 -67.80 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.55 Total: 11.49 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 3.31 Total: 6.09 kcal Atomic # 7 Polarization: -70.78 SS G_CDS: -1.04 Total: -71.81 kcal Atomic # 8 Polarization: -57.63 SS G_CDS: -0.42 Total: -58.05 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -72.22 4.42 -67.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225600482.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.050 kcal (2) G-P(sol) polarization free energy of solvation -72.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds