Wall clock time and date at job start Mon Mar 30 2020 03:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48501 * 109.47438 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47045 * 299.99992 * 3 2 1 6 6 H 1.48501 * 109.46950 * 59.99783 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 11 11 N 1.46901 * 109.47121 * 59.99793 * 9 7 2 12 12 C 1.50701 * 109.47269 * 179.97438 * 9 7 2 13 13 C 1.38254 * 119.98268 * 265.00099 * 12 9 7 14 14 C 1.38367 * 120.08248 * 179.97438 * 13 12 9 15 15 F 1.35107 * 119.97143 * 180.02562 * 14 13 12 16 16 C 1.38668 * 120.05837 * 0.02562 * 14 13 12 17 17 F 1.35101 * 120.01433 * 179.97438 * 16 14 13 18 18 C 1.38468 * 119.96919 * 359.97438 * 16 14 13 19 19 F 1.35096 * 120.04501 * 180.02562 * 18 16 14 20 20 C 1.38619 * 119.98618 * 84.72334 * 12 9 7 21 21 O 1.36004 * 120.02367 * 0.02562 * 20 12 9 22 22 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 23 23 H 1.00901 * 110.99547 * 296.04468 * 11 9 7 24 24 H 1.00898 * 111.00245 * 59.99841 * 11 9 7 25 25 H 1.07997 * 119.95613 * 0.02562 * 13 12 9 26 26 H 0.96700 * 113.99988 * 90.00110 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 0.4069 -2.5772 -1.1992 12 6 2.2304 -3.6446 0.0005 13 6 2.6000 -4.2376 -1.1924 14 6 3.4994 -5.2891 -1.1949 15 9 3.8594 -5.8665 -2.3620 16 6 4.0315 -5.7507 -0.0005 17 9 4.9092 -6.7778 -0.0038 18 6 3.6628 -5.1585 1.1957 19 9 4.1807 -5.6067 2.3602 20 6 2.7645 -4.0995 1.1961 21 8 2.4047 -3.5127 2.3691 22 1 -0.4850 0.8400 -0.0004 23 1 -0.3004 -1.8577 -1.1910 24 1 0.9652 -2.5259 -2.0381 25 1 2.1869 -3.8790 -2.1236 26 1 1.6322 -3.9149 2.7894 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238588540.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:38 Heat of formation + Delta-G solvation = -153.873040 kcal Electronic energy + Delta-G solvation = -17905.400231 eV Core-core repulsion = 14341.806336 eV Total energy + Delta-G solvation = -3563.593896 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.056 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.44816 -48.86178 -48.14187 -39.37850 -36.24029 -34.74826 -31.72408 -29.39709 -28.99294 -26.17392 -23.65116 -22.75838 -20.65396 -18.59392 -17.81448 -17.51256 -16.76445 -16.57521 -16.28310 -15.76709 -15.23768 -14.90036 -14.69691 -14.48096 -14.18602 -13.99047 -13.52348 -13.05746 -12.80885 -12.20693 -11.61531 -11.52153 -11.17380 -10.97860 -10.82817 -10.54411 -10.10770 -9.90707 -8.83307 -8.48730 -8.23953 -7.45190 -6.25299 -4.40196 1.03148 1.10187 3.15529 3.24828 3.29330 3.46340 3.60936 4.23577 4.24803 4.45483 4.64223 4.94960 4.99069 5.04971 5.68512 5.91335 6.09806 6.14543 6.40188 6.57351 6.88115 7.33954 7.61309 7.82816 7.90140 8.43537 8.71698 8.86540 9.31090 10.74342 Molecular weight = 247.06amu Principal moments of inertia in cm(-1) A = 0.027976 B = 0.007541 C = 0.006826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.603037 B = 3712.372939 C = 4101.021534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.069 3.931 3 Si 0.901 3.099 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.540 4.540 8 H 0.058 0.942 9 C 0.247 3.753 10 H 0.062 0.938 11 N -0.852 5.852 12 C -0.005 4.005 13 C -0.114 4.114 14 C 0.085 3.915 15 F -0.127 7.127 16 C 0.015 3.985 17 F -0.127 7.127 18 C 0.063 3.937 19 F -0.123 7.123 20 C 0.092 3.908 21 O -0.464 6.464 22 H 0.267 0.733 23 H 0.362 0.638 24 H 0.313 0.687 25 H 0.157 0.843 26 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.904 -7.814 -0.148 8.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.134 4.134 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.207 1.207 7 C -0.580 4.580 8 H 0.077 0.923 9 C 0.137 3.863 10 H 0.079 0.921 11 N -0.383 5.383 12 C -0.007 4.007 13 C -0.133 4.133 14 C 0.065 3.935 15 F -0.106 7.106 16 C -0.006 4.006 17 F -0.105 7.105 18 C 0.042 3.958 19 F -0.101 7.101 20 C 0.045 3.955 21 O -0.274 6.274 22 H 0.077 0.923 23 H 0.179 0.821 24 H 0.123 0.877 25 H 0.175 0.825 26 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 3.061 -8.121 0.036 8.679 hybrid contribution 0.873 1.207 0.016 1.490 sum 3.934 -6.914 0.052 7.956 Atomic orbital electron populations 1.69722 1.05845 1.27457 1.50119 1.24972 0.94987 0.99419 0.93998 0.86384 0.80181 0.82839 0.77748 1.19649 1.20866 1.20704 1.21665 0.93722 0.90233 1.52331 0.92330 1.17930 0.88724 0.87206 0.92466 0.92063 1.59601 1.18441 1.56464 1.03843 1.20777 0.95124 0.95137 0.89673 1.20933 0.96817 0.94572 1.00966 1.17392 0.99814 0.96528 0.79804 1.91510 1.90576 1.83441 1.45063 1.17215 0.98217 0.92670 0.92471 1.91493 1.66247 1.55676 1.97123 1.17748 1.00623 0.96875 0.80523 1.91493 1.85190 1.88276 1.45146 1.17999 0.97474 0.92146 0.87862 1.84978 1.51364 1.57740 1.33271 0.92285 0.82095 0.87682 0.82535 0.75545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.95 11.54 55.43 0.64 -22.31 15 2 C 0.07 1.75 5.38 -17.82 -0.10 1.66 15 3 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 15 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 6 H -0.28 -6.33 7.11 56.52 0.40 -5.92 15 7 C -0.54 -13.55 8.71 -34.44 -0.30 -13.85 15 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 15 9 C 0.25 5.49 2.66 -70.02 -0.19 5.30 15 10 H 0.06 1.47 7.70 -51.93 -0.40 1.08 15 11 N -0.85 -17.92 8.79 -6.65 -0.06 -17.98 15 12 C -0.01 -0.11 5.01 -104.47 -0.52 -0.63 15 13 C -0.11 -1.98 9.24 -39.53 -0.37 -2.34 15 14 C 0.08 1.43 7.30 -39.38 -0.29 1.14 15 15 F -0.13 -2.08 17.18 2.25 0.04 -2.04 15 16 C 0.02 0.26 7.31 -39.34 -0.29 -0.02 15 17 F -0.13 -2.17 17.09 2.25 0.04 -2.13 15 18 C 0.06 1.11 7.31 -39.26 -0.29 0.82 15 19 F -0.12 -2.12 17.02 2.25 0.04 -2.08 15 20 C 0.09 1.69 6.68 -39.20 -0.26 1.43 15 21 O -0.46 -8.23 12.50 -19.75 -0.25 -8.48 15 22 H 0.27 6.60 8.31 -40.82 -0.34 6.26 15 23 H 0.36 8.30 7.08 -39.29 -0.28 8.02 15 24 H 0.31 6.17 7.20 -39.29 -0.28 5.88 15 25 H 0.16 2.55 6.28 -52.49 -0.33 2.22 15 26 H 0.39 4.91 9.06 45.56 0.41 5.33 15 LS Contribution 247.95 15.07 3.74 3.74 Total: -1.00 -26.42 247.95 -3.85 -30.26 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -0.42 Total: 12.35 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -2.59 Total: -6.50 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.58 Total: -40.29 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -0.25 Total: -8.48 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 0.12 Total: -6.25 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -26.42 -3.85 -30.26 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238588540.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.609 kcal (2) G-P(sol) polarization free energy of solvation -26.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds