Wall clock time and date at job start Mon Mar 30 2020 03:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99716 * 2 1 4 4 H 1.48497 * 109.47099 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46764 * 299.99372 * 3 2 1 6 6 H 1.48499 * 109.47138 * 59.99405 * 3 2 1 7 7 C 1.37880 * 120.00528 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00242 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99601 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47179 * 59.99506 * 9 7 2 11 11 N 1.46896 * 109.47475 * 299.99306 * 9 7 2 12 12 C 1.50700 * 109.46750 * 179.97438 * 9 7 2 13 13 C 1.38705 * 120.81012 * 251.34774 * 12 9 7 14 14 Cl 1.73596 * 120.45686 * 0.02972 * 13 12 9 15 15 N 1.32494 * 119.08389 * 179.74827 * 13 12 9 16 16 C 1.31780 * 120.83645 * 0.56378 * 15 13 12 17 17 N 1.31789 * 121.77788 * 359.68906 * 16 15 13 18 18 C 1.32493 * 120.83319 * 0.02562 * 17 16 15 19 19 Cl 1.73595 * 120.45511 * 180.02562 * 18 17 16 20 20 H 0.96999 * 120.00208 * 0.02562 * 1 2 3 21 21 H 1.00900 * 111.00325 * 190.20496 * 11 9 7 22 22 H 1.00903 * 110.99618 * 314.16203 * 11 9 7 23 23 H 1.07997 * 119.11467 * 179.70989 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6248 -2.5570 -0.8896 11 7 0.4063 -2.5768 1.1997 12 6 2.2306 -3.6444 0.0005 13 6 2.4027 -4.4320 -1.1282 14 17 1.4909 -4.1137 -2.5707 15 7 3.2767 -5.4271 -1.0920 16 6 3.9689 -5.6788 0.0008 17 7 3.8283 -4.9555 1.0934 18 6 2.9774 -3.9406 1.1311 19 17 2.8006 -2.9938 2.5754 20 1 -0.4850 0.8400 -0.0004 21 1 0.0203 -3.5024 1.3108 22 1 0.9197 -2.2979 2.0224 23 1 4.6705 -6.4999 0.0010 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238612543.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:26 Heat of formation + Delta-G solvation = 24.202451 kcal Electronic energy + Delta-G solvation = -13825.255896 eV Core-core repulsion = 11145.976645 eV Total energy + Delta-G solvation = -2679.279251 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 246.997 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.24912 -38.18463 -38.01865 -36.81063 -34.62070 -33.88316 -31.71956 -28.14811 -25.99823 -25.54595 -22.73697 -19.45675 -19.20853 -18.36358 -16.86529 -16.44515 -16.19102 -15.69864 -15.61672 -15.32098 -14.41342 -13.95990 -13.62403 -13.20522 -12.97597 -12.80089 -12.44966 -12.29110 -12.17766 -11.75314 -11.31626 -11.28049 -10.71745 -10.52886 -10.28533 -8.94120 -8.00612 -6.20591 -0.51850 -0.36812 0.31553 0.70038 1.42523 1.46850 1.55053 2.35990 2.48847 3.03690 3.09707 3.26545 3.50420 3.91862 4.30569 4.46069 4.91998 5.40859 5.47834 5.72406 6.03510 6.58093 6.63753 7.03090 7.20026 7.50166 9.03517 Molecular weight = 247.00amu Principal moments of inertia in cm(-1) A = 0.022108 B = 0.011157 C = 0.008755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.190440 B = 2508.983134 C = 3197.501454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.047 3.953 3 Si 0.937 3.063 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.537 4.537 8 H 0.044 0.956 9 C 0.262 3.738 10 H 0.051 0.949 11 N -0.823 5.823 12 C -0.169 4.169 13 C 0.217 3.783 14 Cl 0.006 6.994 15 N -0.516 5.516 16 C 0.313 3.687 17 N -0.518 5.518 18 C 0.220 3.780 19 Cl 0.013 6.987 20 H 0.258 0.742 21 H 0.307 0.693 22 H 0.333 0.667 23 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.426 -9.092 0.684 10.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.158 4.158 3 Si 0.763 3.237 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.575 4.575 8 H 0.063 0.937 9 C 0.151 3.849 10 H 0.068 0.932 11 N -0.355 5.355 12 C -0.178 4.178 13 C 0.044 3.956 14 Cl 0.035 6.965 15 N -0.233 5.233 16 C 0.026 3.974 17 N -0.235 5.235 18 C 0.047 3.953 19 Cl 0.042 6.958 20 H 0.067 0.933 21 H 0.118 0.882 22 H 0.152 0.848 23 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 5.331 -9.038 0.355 10.499 hybrid contribution 0.336 1.030 0.272 1.117 sum 5.667 -8.008 0.627 9.830 Atomic orbital electron populations 1.70205 1.06664 1.26524 1.47152 1.25476 0.95302 1.01127 0.93931 0.85849 0.79205 0.80973 0.77647 1.19656 1.20655 1.20649 1.20868 0.91763 0.90161 1.54752 0.93749 1.18087 0.86864 0.87552 0.92389 0.93158 1.59188 1.41181 1.28659 1.06471 1.22872 1.01755 1.01148 0.92065 1.22015 0.92864 0.91579 0.89139 1.98416 1.70063 1.93827 1.34210 1.67871 1.07171 1.17565 1.30715 1.25795 0.94571 0.96702 0.80309 1.67878 1.18584 1.05955 1.31063 1.21922 0.92288 0.91654 0.89464 1.98382 1.94859 1.68357 1.34220 0.93256 0.88197 0.84785 0.72627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.18 12.77 21.45 0.27 -47.91 14 2 C 0.05 2.46 5.39 84.66 0.46 2.91 14 3 Si 0.94 42.06 29.54 68.60 2.03 44.09 14 4 H -0.27 -12.04 7.11 99.48 0.71 -11.34 14 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 14 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 14 7 C -0.54 -27.62 7.79 25.60 0.20 -27.42 14 8 H 0.04 2.33 7.74 -2.91 -0.02 2.30 14 9 C 0.26 12.24 2.65 43.42 0.11 12.36 14 10 H 0.05 2.56 6.43 -2.39 -0.02 2.54 14 11 N -0.82 -37.13 8.32 -174.97 -1.46 -38.58 14 12 C -0.17 -6.82 4.77 -19.64 -0.09 -6.91 14 13 C 0.22 8.01 7.33 84.70 0.62 8.63 14 14 Cl 0.01 0.22 27.39 -2.72 -0.07 0.14 14 15 N -0.52 -16.46 10.43 -190.90 -1.99 -18.45 14 16 C 0.31 8.45 12.28 180.89 2.22 10.67 14 17 N -0.52 -16.63 10.43 -190.90 -1.99 -18.62 14 18 C 0.22 8.16 7.17 84.70 0.61 8.77 14 19 Cl 0.01 0.47 24.66 -2.72 -0.07 0.41 14 20 H 0.26 13.69 8.31 -92.71 -0.77 12.92 14 21 H 0.31 12.38 8.90 -89.69 -0.80 11.58 14 22 H 0.33 14.64 5.35 -89.69 -0.48 14.16 14 23 H 0.26 3.99 8.06 -2.91 -0.02 3.96 14 Total: -1.00 -58.10 237.04 0.86 -57.24 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.01 Total: 12.68 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 4.13 Total: 9.01 kcal Atomic # 7 Polarization: -118.40 SS G_CDS: -5.16 Total: -123.57 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Atomic # 17 Polarization: 0.69 SS G_CDS: -0.14 Total: 0.55 kcal Total: -58.10 0.86 -57.24 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238612543.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.443 kcal (2) G-P(sol) polarization free energy of solvation -58.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds