Wall clock time and date at job start Mon Mar 30 2020 03:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31076 * 123.05179 * 2 1 4 4 C 1.29300 * 117.45612 * 179.97438 * 3 2 1 5 5 S 1.70924 * 110.61729 * 0.02562 * 4 3 2 6 6 C 1.36760 * 123.05105 * 179.97438 * 2 1 3 7 7 C 1.47023 * 126.17638 * 0.26363 * 6 2 1 8 8 N 1.33239 * 118.94670 * 359.44094 * 7 6 2 9 9 C 1.31553 * 120.98219 * 179.75257 * 8 7 6 10 10 C 1.41392 * 118.90271 * 0.51091 * 9 8 7 11 11 C 1.40941 * 120.93899 * 179.76837 * 10 9 8 12 12 H 1.08006 * 119.99937 * 23.29666 * 11 10 9 13 13 C 1.39969 * 119.99931 * 203.29490 * 11 10 9 14 14 N 1.30838 * 119.99864 * 17.47650 * 13 11 10 15 15 Si 1.86795 * 119.99999 * 197.46955 * 13 11 10 16 16 H 1.48504 * 109.47064 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46818 * 120.00286 * 15 13 11 18 18 H 1.48497 * 109.47493 * 240.00534 * 15 13 11 19 19 C 1.41390 * 118.11866 * 359.74745 * 10 9 8 20 20 N 1.31546 * 118.90553 * 0.02562 * 19 10 9 21 21 H 1.09000 * 109.46787 * 270.00474 * 1 2 3 22 22 H 1.09003 * 109.47088 * 30.00285 * 1 2 3 23 23 H 1.08993 * 109.47126 * 150.00648 * 1 2 3 24 24 H 1.08003 * 124.69678 * 179.97438 * 4 3 2 25 25 H 1.08003 * 120.54585 * 180.25687 * 9 8 7 26 26 H 0.97001 * 119.99563 * 179.97438 * 14 13 11 27 27 H 1.08004 * 120.54246 * 180.02562 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2219 1.0987 0.0000 4 6 3.5087 0.9726 0.0005 5 16 3.9517 -0.6783 0.0004 6 6 2.2529 -1.1463 0.0005 7 6 1.7314 -2.5210 -0.0043 8 7 0.4126 -2.7104 0.0016 9 6 -0.0974 -3.9231 -0.0073 10 6 0.7787 -5.0328 -0.0123 11 6 0.2789 -6.3506 -0.0169 12 1 -0.7162 -6.5494 -0.3868 13 6 1.0720 -7.4017 0.4577 14 7 2.1134 -7.1480 1.2081 15 14 0.6437 -9.1664 0.0200 16 1 -0.5709 -9.1837 -0.8341 17 1 1.7760 -9.7821 -0.7177 18 1 0.3859 -9.9362 1.2634 19 6 2.1704 -4.7832 -0.0130 20 7 2.5929 -3.5375 -0.0084 21 1 -0.3633 0.0001 1.0277 22 1 -0.3633 0.8900 -0.5139 23 1 -0.3633 -0.8900 -0.5137 24 1 4.2072 1.7964 0.0002 25 1 -1.1676 -4.0685 -0.0066 26 1 2.6628 -7.8765 1.5374 27 1 2.8749 -5.6019 -0.0171 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259786285.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:57 Heat of formation + Delta-G solvation = 56.075776 kcal Electronic energy + Delta-G solvation = -14753.124259 eV Core-core repulsion = 12215.536790 eV Total energy + Delta-G solvation = -2537.587469 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 247.047 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.12893 -40.25494 -36.37865 -34.08101 -33.53337 -31.74417 -29.45671 -26.96488 -25.59588 -24.70064 -23.63673 -20.37846 -19.58406 -18.93836 -17.83910 -17.21304 -16.89083 -15.96861 -15.58000 -15.26740 -14.86579 -14.35014 -14.18294 -13.83147 -13.68201 -13.33198 -13.19393 -13.08383 -12.89005 -12.21541 -12.09264 -11.52763 -11.30017 -11.28074 -10.75075 -10.56211 -9.87262 -9.68167 -9.29160 -8.93592 -6.57248 -0.51582 0.48344 0.74514 0.85399 0.97637 1.40524 1.50455 1.58985 1.91603 2.11999 2.61664 3.37960 3.58850 3.61074 3.86472 4.37582 4.38705 4.50729 4.80067 4.82705 4.88125 4.96137 5.06209 5.08006 5.46409 5.63285 5.75895 6.13413 6.26632 6.44390 6.80919 6.88575 7.73594 7.98323 Molecular weight = 247.05amu Principal moments of inertia in cm(-1) A = 0.047691 B = 0.005747 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.971745 B = 4870.924922 C = 5380.891122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.045 3.955 3 N -0.484 5.484 4 C -0.005 4.005 5 S 0.170 5.830 6 C -0.154 4.154 7 C 0.165 3.835 8 N -0.466 5.466 9 C 0.004 3.996 10 C -0.009 4.009 11 C -0.418 4.418 12 H 0.109 0.891 13 C 0.032 3.968 14 N -0.792 5.792 15 Si 1.000 3.000 16 H -0.248 1.248 17 H -0.263 1.263 18 H -0.263 1.263 19 C 0.053 3.947 20 N -0.500 5.500 21 H 0.065 0.935 22 H 0.073 0.927 23 H 0.089 0.911 24 H 0.240 0.760 25 H 0.167 0.833 26 H 0.304 0.696 27 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.179 2.691 -1.689 3.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.091 4.091 3 N -0.198 5.198 4 C -0.301 4.301 5 S 0.424 5.576 6 C -0.277 4.277 7 C -0.091 4.091 8 N -0.179 5.179 9 C -0.169 4.169 10 C -0.016 4.016 11 C -0.447 4.447 12 H 0.127 0.873 13 C -0.189 4.189 14 N -0.415 5.415 15 Si 0.819 3.181 16 H -0.171 1.171 17 H -0.187 1.187 18 H -0.188 1.188 19 C -0.122 4.122 20 N -0.213 5.213 21 H 0.083 0.917 22 H 0.092 0.908 23 H 0.107 0.893 24 H 0.256 0.744 25 H 0.184 0.816 26 H 0.116 0.884 27 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.563 3.713 -1.525 4.762 hybrid contribution -1.113 -1.644 0.135 1.990 sum 1.449 2.069 -1.390 2.883 Atomic orbital electron populations 1.20399 0.86112 1.03485 1.02507 1.21045 0.99062 0.85104 1.03850 1.65967 1.06075 1.31281 1.16497 1.28988 0.95129 1.01045 1.04949 1.83702 1.04590 1.02122 1.67186 1.23850 0.96732 0.94775 1.12374 1.19116 0.85938 0.89920 1.14090 1.67620 1.13639 1.26002 1.10630 1.23299 1.00043 0.86817 1.06771 1.19618 0.94157 0.96135 0.91725 1.20123 1.02577 0.90493 1.31499 0.87319 1.27170 0.93168 1.07226 0.91329 1.69778 1.13051 1.38429 1.20257 0.84860 0.80162 0.73638 0.79489 1.17081 1.18711 1.18752 1.23281 0.95007 0.91745 1.02136 1.67760 1.40571 1.01014 1.11956 0.91659 0.90842 0.89261 0.74447 0.81605 0.88411 0.82848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.42 9.63 71.24 0.69 -1.74 15 2 C 0.05 1.83 6.84 42.32 0.29 2.12 15 3 N -0.48 -17.51 10.49 -189.62 -1.99 -19.50 15 4 C -0.01 -0.16 12.20 130.62 1.59 1.44 15 5 S 0.17 5.91 22.98 -56.49 -1.30 4.61 15 6 C -0.15 -6.82 6.52 24.23 0.16 -6.66 15 7 C 0.17 8.31 7.57 136.76 1.04 9.35 15 8 N -0.47 -22.65 7.19 -187.74 -1.35 -24.00 15 9 C 0.00 0.18 11.10 85.51 0.95 1.13 15 10 C -0.01 -0.43 5.61 -21.07 -0.12 -0.55 15 11 C -0.42 -18.98 9.08 23.35 0.21 -18.77 15 12 H 0.11 4.47 7.91 -2.91 -0.02 4.45 15 13 C 0.03 1.33 5.19 85.26 0.44 1.78 15 14 N -0.79 -35.80 10.91 21.83 0.24 -35.56 15 15 Si 1.00 31.23 29.59 68.60 2.03 33.26 15 16 H -0.25 -7.43 7.11 99.48 0.71 -6.73 15 17 H -0.26 -8.03 7.11 99.48 0.71 -7.32 15 18 H -0.26 -7.96 7.11 99.48 0.71 -7.25 15 19 C 0.05 2.77 9.99 85.51 0.85 3.62 15 20 N -0.50 -26.06 10.13 -187.75 -1.90 -27.96 15 21 H 0.06 2.33 8.14 -2.39 -0.02 2.31 15 22 H 0.07 2.35 8.14 -2.39 -0.02 2.33 15 23 H 0.09 3.55 5.75 -2.39 -0.01 3.54 15 24 H 0.24 4.43 8.06 -2.91 -0.02 4.41 15 25 H 0.17 6.73 8.06 -2.91 -0.02 6.71 15 26 H 0.30 12.12 8.30 -92.71 -0.77 11.35 15 27 H 0.15 7.97 6.17 -2.91 -0.02 7.95 15 Total: -1.00 -58.74 256.87 3.04 -55.69 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 1.21 Total: 21.74 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: 6.10 Total: -8.28 kcal Atomic # 7 Polarization: -102.02 SS G_CDS: -5.00 Total: -107.02 kcal Atomic # 14 Polarization: 31.23 SS G_CDS: 2.03 Total: 33.26 kcal Atomic # 16 Polarization: 5.91 SS G_CDS: -1.30 Total: 4.61 kcal Total: -58.74 3.04 -55.69 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259786285.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.770 kcal (2) G-P(sol) polarization free energy of solvation -58.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds