Wall clock time and date at job start Mon Mar 30 2020 03:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99649 * 2 1 4 4 H 1.48501 * 109.46957 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47645 * 300.00281 * 3 2 1 6 6 H 1.48506 * 109.47408 * 60.00471 * 3 2 1 7 7 C 1.37866 * 120.00277 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00509 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00192 * 359.97438 * 7 2 1 10 10 C 1.50695 * 109.47739 * 179.97438 * 9 7 2 11 11 C 1.38702 * 120.73825 * 270.01085 * 10 9 7 12 12 Cl 1.73606 * 120.40744 * 359.96768 * 11 10 9 13 13 N 1.32436 * 119.18565 * 179.97438 * 11 10 9 14 14 C 1.32484 * 120.75065 * 359.97438 * 13 11 10 15 15 N 1.38401 * 119.19961 * 180.02562 * 14 13 11 16 16 N 1.32479 * 121.59456 * 0.02562 * 14 13 11 17 17 C 1.32434 * 120.75639 * 359.97438 * 16 14 13 18 18 Cl 1.73595 * 120.41033 * 180.02562 * 17 16 14 19 19 H 0.96997 * 120.00008 * 359.97438 * 1 2 3 20 20 H 1.09006 * 109.46756 * 60.00300 * 9 7 2 21 21 H 1.09003 * 109.47530 * 300.00524 * 9 7 2 22 22 H 0.97000 * 119.99787 * 359.97438 * 15 14 13 23 23 H 0.97001 * 119.99585 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2304 -3.6445 -0.0018 11 6 2.6903 -4.1827 -1.1946 12 17 2.1443 -3.5456 -2.7144 13 7 3.5510 -5.1887 -1.1598 14 6 3.9725 -5.6799 -0.0038 15 7 4.8726 -6.7312 -0.0050 16 7 3.5531 -5.1892 1.1531 17 6 2.6925 -4.1832 1.1900 18 17 2.1496 -3.5467 2.7110 19 1 -0.4850 0.8400 0.0004 20 1 0.6242 -2.5567 -0.8904 21 1 0.6247 -2.5571 0.8896 22 1 5.1869 -7.0996 -0.8454 23 1 5.1885 -7.1000 0.8347 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259790773.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:57 Heat of formation + Delta-G solvation = 33.147673 kcal Electronic energy + Delta-G solvation = -13451.845100 eV Core-core repulsion = 10772.953743 eV Total energy + Delta-G solvation = -2678.891357 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 246.997 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.65533 -36.46760 -36.46099 -34.83473 -33.21230 -33.04930 -31.05610 -26.90781 -24.15613 -23.75949 -21.39678 -18.31395 -17.96793 -16.43988 -15.62192 -15.10310 -15.00441 -14.61559 -14.07577 -13.42846 -12.48598 -12.30994 -11.84231 -11.64033 -11.39830 -10.89053 -10.88599 -10.50894 -10.24338 -10.08944 -9.74353 -9.64390 -9.41181 -9.07715 -8.40906 -7.76796 -6.04794 -4.08082 1.15927 1.48461 1.84665 2.34260 3.30039 3.38110 3.41762 3.43104 4.02242 4.44795 4.75685 5.01855 5.30406 5.62614 5.73626 6.40499 6.97023 7.25532 7.39869 7.46124 7.53474 7.88429 8.23290 8.44200 8.93263 9.55174 11.05083 Molecular weight = 247.00amu Principal moments of inertia in cm(-1) A = 0.022779 B = 0.009471 C = 0.007579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.912895 B = 2955.620645 C = 3693.457945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.065 3.935 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.504 4.504 8 H 0.054 0.946 9 C 0.058 3.942 10 C -0.158 4.158 11 C 0.261 3.739 12 Cl 0.004 6.996 13 N -0.566 5.566 14 C 0.572 3.428 15 N -0.824 5.824 16 N -0.566 5.566 17 C 0.261 3.739 18 Cl 0.004 6.996 19 H 0.262 0.738 20 H 0.044 0.956 21 H 0.045 0.955 22 H 0.413 0.587 23 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.622 -10.137 -0.003 11.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.542 4.542 8 H 0.072 0.928 9 C 0.020 3.980 10 C -0.167 4.167 11 C 0.088 3.912 12 Cl 0.033 6.967 13 N -0.292 5.292 14 C 0.213 3.787 15 N -0.376 5.376 16 N -0.292 5.292 17 C 0.088 3.912 18 Cl 0.033 6.967 19 H 0.072 0.928 20 H 0.063 0.937 21 H 0.063 0.937 22 H 0.244 0.756 23 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 5.988 -10.625 -0.004 12.196 hybrid contribution 0.171 1.361 0.000 1.372 sum 6.159 -9.264 -0.004 11.125 Atomic orbital electron populations 1.69946 1.05891 1.26721 1.50266 1.24886 0.94805 0.98920 0.95058 0.86548 0.80217 0.83745 0.77655 1.19721 1.20922 1.20917 1.20866 0.92693 0.89312 1.51322 0.92751 1.18359 0.91765 0.87852 1.00023 1.21630 1.03823 1.01800 0.89434 1.21442 0.91214 0.89953 0.88601 1.98414 1.86617 1.83658 1.28052 1.67074 1.17477 1.15486 1.29202 1.18601 0.89012 0.88500 0.82608 1.41497 1.48382 1.35568 1.12141 1.67068 1.17525 1.15501 1.29146 1.21444 0.91210 0.89951 0.88605 1.98414 1.86720 1.83678 1.27920 0.92847 0.93743 0.93737 0.75571 0.75571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.17 13.29 55.43 0.74 -24.43 14 2 C 0.07 1.77 5.46 -17.82 -0.10 1.67 14 3 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 14 4 H -0.27 -6.43 7.11 56.52 0.40 -6.02 14 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 14 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 14 7 C -0.50 -13.40 9.09 -34.44 -0.31 -13.71 14 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 14 9 C 0.06 1.41 4.40 -29.04 -0.13 1.28 14 10 C -0.16 -3.42 5.11 -104.28 -0.53 -3.95 14 11 C 0.26 5.29 7.33 -17.12 -0.13 5.16 14 12 Cl 0.00 0.07 27.63 -51.86 -1.43 -1.36 14 13 N -0.57 -10.49 10.45 -11.04 -0.12 -10.61 14 14 C 0.57 9.74 8.67 -322.85 -2.80 6.94 14 15 N -0.82 -9.59 9.07 29.76 0.27 -9.32 14 16 N -0.57 -10.49 10.45 -11.05 -0.12 -10.61 14 17 C 0.26 5.29 7.33 -17.12 -0.13 5.16 14 18 Cl 0.00 0.08 27.63 -51.86 -1.43 -1.36 14 19 H 0.26 7.03 8.31 -40.82 -0.34 6.69 14 20 H 0.04 1.13 7.02 -51.93 -0.36 0.76 14 21 H 0.04 1.13 7.02 -51.93 -0.36 0.77 14 22 H 0.41 3.87 8.94 -40.82 -0.37 3.51 14 23 H 0.41 3.87 8.94 -40.82 -0.37 3.50 14 LS Contribution 244.74 15.07 3.69 3.69 Total: -1.00 -29.03 244.74 -8.54 -37.58 By element: Atomic # 1 Polarization: -1.25 SS G_CDS: -1.00 Total: -2.25 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -4.12 Total: 2.56 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: 0.78 Total: -54.96 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 17 Polarization: 0.15 SS G_CDS: -2.87 Total: -2.72 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -29.03 -8.54 -37.58 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259790773.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.724 kcal (2) G-P(sol) polarization free energy of solvation -29.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds