Wall clock time and date at job start Mon Mar 30 2020 03:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99649 * 2 1 4 4 H 1.48501 * 109.46957 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47645 * 300.00281 * 3 2 1 6 6 H 1.48506 * 109.47408 * 60.00471 * 3 2 1 7 7 C 1.37866 * 120.00277 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00509 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00192 * 359.97438 * 7 2 1 10 10 C 1.50695 * 109.47739 * 179.97438 * 9 7 2 11 11 C 1.38702 * 120.73825 * 270.01085 * 10 9 7 12 12 Cl 1.73606 * 120.40744 * 359.96768 * 11 10 9 13 13 N 1.32436 * 119.18565 * 179.97438 * 11 10 9 14 14 C 1.32484 * 120.75065 * 359.97438 * 13 11 10 15 15 N 1.38401 * 119.19961 * 180.02562 * 14 13 11 16 16 N 1.32479 * 121.59456 * 0.02562 * 14 13 11 17 17 C 1.32434 * 120.75639 * 359.97438 * 16 14 13 18 18 Cl 1.73595 * 120.41033 * 180.02562 * 17 16 14 19 19 H 0.96997 * 120.00008 * 359.97438 * 1 2 3 20 20 H 1.09006 * 109.46756 * 60.00300 * 9 7 2 21 21 H 1.09003 * 109.47530 * 300.00524 * 9 7 2 22 22 H 0.97000 * 119.99787 * 359.97438 * 15 14 13 23 23 H 0.97001 * 119.99585 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2304 -3.6445 -0.0018 11 6 2.6903 -4.1827 -1.1946 12 17 2.1443 -3.5456 -2.7144 13 7 3.5510 -5.1887 -1.1598 14 6 3.9725 -5.6799 -0.0038 15 7 4.8726 -6.7312 -0.0050 16 7 3.5531 -5.1892 1.1531 17 6 2.6925 -4.1832 1.1900 18 17 2.1496 -3.5467 2.7110 19 1 -0.4850 0.8400 0.0004 20 1 0.6242 -2.5567 -0.8904 21 1 0.6247 -2.5571 0.8896 22 1 5.1869 -7.0996 -0.8454 23 1 5.1885 -7.1000 0.8347 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259790773.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:57 Heat of formation + Delta-G solvation = 15.499660 kcal Electronic energy + Delta-G solvation = -13452.610376 eV Core-core repulsion = 10772.953743 eV Total energy + Delta-G solvation = -2679.656632 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 246.997 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.12392 -37.98864 -37.97146 -36.32106 -34.99260 -34.52661 -32.75415 -28.69362 -25.67315 -25.50994 -23.10483 -19.72839 -19.33319 -18.47751 -16.80752 -16.74035 -16.58337 -16.23345 -15.58167 -15.14400 -14.36254 -13.82882 -13.49740 -13.44748 -13.06447 -12.70643 -12.58840 -12.30321 -11.89876 -11.67680 -11.41793 -11.23448 -11.16153 -10.62190 -10.42848 -9.22726 -8.10252 -6.19593 -0.37627 -0.03375 0.34092 0.80854 1.43248 1.46095 1.56333 2.17577 2.43943 2.57501 3.20755 3.28448 3.55339 4.05612 4.27504 4.81724 5.44980 5.53173 5.57754 5.82031 6.15263 6.16453 6.21879 6.87373 7.19805 7.46539 8.99140 Molecular weight = 247.00amu Principal moments of inertia in cm(-1) A = 0.022779 B = 0.009471 C = 0.007579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.912895 B = 2955.620645 C = 3693.457945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.019 3.981 3 Si 0.947 3.053 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.507 4.507 8 H 0.046 0.954 9 C 0.071 3.929 10 C -0.190 4.190 11 C 0.262 3.738 12 Cl 0.008 6.992 13 N -0.568 5.568 14 C 0.572 3.428 15 N -0.793 5.793 16 N -0.568 5.568 17 C 0.262 3.738 18 Cl 0.008 6.992 19 H 0.264 0.736 20 H 0.028 0.972 21 H 0.028 0.972 22 H 0.428 0.572 23 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.113 -10.891 -0.003 13.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.180 4.180 3 Si 0.773 3.227 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.033 3.967 10 C -0.200 4.200 11 C 0.088 3.912 12 Cl 0.037 6.963 13 N -0.294 5.294 14 C 0.213 3.787 15 N -0.346 5.346 16 N -0.294 5.294 17 C 0.088 3.912 18 Cl 0.037 6.963 19 H 0.073 0.927 20 H 0.046 0.954 21 H 0.046 0.954 22 H 0.262 0.738 23 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 7.533 -11.440 -0.005 13.698 hybrid contribution -0.215 1.449 0.000 1.465 sum 7.318 -9.991 -0.004 12.384 Atomic orbital electron populations 1.70040 1.07133 1.27533 1.51388 1.25585 0.95505 1.01926 0.94946 0.85670 0.79100 0.80202 0.77774 1.19409 1.20475 1.20463 1.21057 0.92360 0.90558 1.50527 0.93568 1.18017 0.91864 0.88425 0.98371 1.21333 1.05316 1.02576 0.90743 1.21487 0.91118 0.90095 0.88453 1.98410 1.86622 1.83698 1.27577 1.67191 1.17440 1.15204 1.29611 1.19093 0.88855 0.88830 0.81947 1.41532 1.45911 1.33178 1.13954 1.67186 1.17487 1.15219 1.29556 1.21489 0.91112 0.90091 0.88458 1.98409 1.86724 1.83718 1.27443 0.92710 0.95357 0.95351 0.73810 0.73811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.53 13.29 21.44 0.28 -52.24 14 2 C 0.02 1.05 5.46 84.65 0.46 1.51 14 3 Si 0.95 43.10 29.54 68.60 2.03 45.13 14 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 14 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 14 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 14 7 C -0.51 -27.07 9.09 25.60 0.23 -26.83 14 8 H 0.05 2.50 7.74 -2.91 -0.02 2.47 14 9 C 0.07 3.53 4.40 29.10 0.13 3.66 14 10 C -0.19 -8.19 5.11 -19.64 -0.10 -8.29 14 11 C 0.26 10.43 7.33 84.71 0.62 11.05 14 12 Cl 0.01 0.31 27.63 -2.72 -0.08 0.23 14 13 N -0.57 -19.97 10.45 -188.85 -1.97 -21.95 14 14 C 0.57 18.07 8.67 261.50 2.27 20.34 14 15 N -0.79 -15.67 9.07 -59.77 -0.54 -16.21 14 16 N -0.57 -19.97 10.45 -188.86 -1.97 -21.95 14 17 C 0.26 10.43 7.33 84.72 0.62 11.05 14 18 Cl 0.01 0.31 27.63 -2.72 -0.08 0.24 14 19 H 0.26 14.24 8.31 -92.71 -0.77 13.47 14 20 H 0.03 1.47 7.02 -2.38 -0.02 1.45 14 21 H 0.03 1.47 7.02 -2.39 -0.02 1.46 14 22 H 0.43 6.39 8.94 -92.71 -0.83 5.56 14 23 H 0.43 6.39 8.94 -92.71 -0.83 5.56 14 Total: -1.00 -60.64 244.74 1.54 -59.10 By element: Atomic # 1 Polarization: -4.45 SS G_CDS: -0.36 Total: -4.81 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 4.23 Total: 12.47 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -4.21 Total: -112.35 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 17 Polarization: 0.62 SS G_CDS: -0.15 Total: 0.47 kcal Total: -60.64 1.54 -59.10 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259790773.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.599 kcal (2) G-P(sol) polarization free energy of solvation -60.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds