Wall clock time and date at job start Mon Mar 30 2020 03:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 11 11 N 1.46902 * 109.47373 * 59.99759 * 9 7 2 12 12 C 1.50698 * 109.47465 * 180.02562 * 9 7 2 13 13 C 1.38349 * 119.98444 * 104.99959 * 12 9 7 14 14 F 1.35095 * 120.01551 * 0.02562 * 13 12 9 15 15 C 1.38874 * 119.97339 * 180.02562 * 13 12 9 16 16 O 1.36000 * 120.02801 * 179.97438 * 15 13 12 17 17 C 1.38642 * 119.94458 * 359.97438 * 15 13 12 18 18 C 1.38353 * 119.96870 * 0.02562 * 17 15 13 19 19 F 1.35101 * 119.98590 * 179.97438 * 18 17 15 20 20 C 1.38394 * 119.98226 * 284.72254 * 12 9 7 21 21 F 1.35102 * 119.97565 * 0.02562 * 20 12 9 22 22 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 23 23 H 1.00902 * 110.99590 * 59.99905 * 11 9 7 24 24 H 1.00896 * 111.00313 * 183.95752 * 11 9 7 25 25 H 0.96698 * 114.00406 * 89.99507 * 16 15 13 26 26 H 1.08000 * 120.01294 * 179.97438 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 1 0.6248 -2.5524 0.9029 11 7 0.4061 -2.5829 -1.1864 12 6 2.2305 -3.6445 0.0182 13 6 2.4441 -4.3656 1.1794 14 9 1.7746 -4.0435 2.3077 15 6 3.3471 -5.4207 1.1847 16 8 3.5583 -6.1300 2.3257 17 6 4.0330 -5.7504 0.0259 18 6 3.8176 -5.0277 -1.1341 19 9 4.4862 -5.3483 -2.2634 20 6 2.9115 -3.9781 -1.1395 21 9 2.6983 -3.2764 -2.2741 22 1 -0.4850 -0.8401 -0.0004 23 1 0.9638 -2.5356 -2.0259 24 1 -0.1578 -3.4195 -1.1735 25 1 2.9710 -6.8910 2.4302 26 1 4.7358 -6.5705 0.0288 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260107734.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:06 Heat of formation + Delta-G solvation = -149.773269 kcal Electronic energy + Delta-G solvation = -18202.447446 eV Core-core repulsion = 14639.031330 eV Total energy + Delta-G solvation = -3563.416116 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.056 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.32203 -48.65436 -48.37657 -39.35537 -36.96975 -34.72603 -31.57855 -29.76090 -28.99859 -25.87561 -23.52032 -22.63054 -21.14505 -18.53813 -18.03169 -17.94677 -17.02974 -16.56001 -16.21111 -15.61347 -15.28970 -14.83691 -14.52258 -14.49996 -14.08874 -14.03937 -13.69144 -13.60120 -12.64932 -12.57500 -11.77793 -11.59760 -11.22643 -10.94194 -10.72323 -10.42309 -10.08426 -9.19331 -8.43130 -8.38101 -8.30580 -7.69194 -6.27409 -4.11888 0.80930 0.97250 3.17844 3.45874 3.49818 3.63571 3.65455 4.03682 4.19019 4.54963 4.58130 4.68494 5.08520 5.34459 5.53369 5.71757 5.84086 5.95887 5.97085 6.12477 6.72126 6.93560 7.41016 7.77259 8.13911 8.50694 8.63167 8.94218 9.71486 11.13298 Molecular weight = 247.06amu Principal moments of inertia in cm(-1) A = 0.024252 B = 0.008958 C = 0.007691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.279979 B = 3125.041206 C = 3639.934009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.043 3.957 3 Si 1.069 2.931 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.612 4.612 8 H 0.048 0.952 9 C 0.242 3.758 10 H 0.054 0.946 11 N -0.833 5.833 12 C -0.101 4.101 13 C 0.094 3.906 14 F -0.117 7.117 15 C 0.088 3.912 16 O -0.481 6.481 17 C -0.149 4.149 18 C 0.069 3.931 19 F -0.127 7.127 20 C 0.091 3.909 21 F -0.109 7.109 22 H 0.290 0.710 23 H 0.338 0.662 24 H 0.302 0.698 25 H 0.392 0.608 26 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.327 -12.782 0.230 13.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.168 4.168 3 Si 0.897 3.103 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.650 4.650 8 H 0.067 0.933 9 C 0.132 3.868 10 H 0.072 0.928 11 N -0.364 5.364 12 C -0.106 4.106 13 C 0.073 3.927 14 F -0.095 7.095 15 C 0.042 3.958 16 O -0.291 6.291 17 C -0.169 4.169 18 C 0.048 3.952 19 F -0.106 7.106 20 C 0.070 3.930 21 F -0.087 7.087 22 H 0.103 0.897 23 H 0.155 0.845 24 H 0.113 0.887 25 H 0.248 0.752 26 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 5.186 -10.006 0.524 11.282 hybrid contribution 0.528 -2.882 -0.455 2.965 sum 5.713 -12.888 0.068 14.098 Atomic orbital electron populations 1.70530 1.06803 1.32878 1.41559 1.25658 0.96546 1.01840 0.92760 0.83572 0.74743 0.75249 0.76725 1.21439 1.21563 1.20899 1.21605 0.93397 0.89919 1.60095 0.93343 1.18452 0.87589 0.89134 0.91614 0.92815 1.59469 1.28741 1.42232 1.05936 1.21695 1.00295 0.98885 0.89678 1.17635 0.94707 0.96950 0.83453 1.91517 1.78107 1.91912 1.47948 1.18011 0.96825 0.94308 0.86673 1.84902 1.61803 1.44891 1.37473 1.20862 1.03547 1.02610 0.89858 1.17385 0.96306 0.97558 0.83912 1.91516 1.78505 1.92017 1.48553 1.17147 0.98998 0.92751 0.84126 1.91426 1.92980 1.76981 1.47302 0.89694 0.84469 0.88732 0.75217 0.82771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.50 13.51 55.43 0.75 -25.75 15 2 C 0.04 1.21 5.39 -17.82 -0.10 1.12 15 3 Si 1.07 25.39 29.90 -169.99 -5.08 20.31 15 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 7 C -0.61 -17.02 8.65 -34.44 -0.30 -17.32 15 8 H 0.05 1.37 7.74 -52.49 -0.41 0.97 15 9 C 0.24 5.90 2.30 -70.02 -0.16 5.74 15 10 H 0.05 1.41 7.14 -51.92 -0.37 1.04 15 11 N -0.83 -19.14 7.66 -6.65 -0.05 -19.19 15 12 C -0.10 -2.07 4.89 -104.52 -0.51 -2.59 15 13 C 0.09 1.73 7.25 -39.31 -0.29 1.44 15 14 F -0.12 -2.29 16.10 2.25 0.04 -2.25 15 15 C 0.09 1.32 6.71 -39.20 -0.26 1.05 15 16 O -0.48 -6.02 13.37 -19.74 -0.26 -6.29 15 17 C -0.15 -2.05 9.96 -39.39 -0.39 -2.44 15 18 C 0.07 1.11 7.30 -39.38 -0.29 0.83 15 19 F -0.13 -2.01 17.18 2.25 0.04 -1.97 15 20 C 0.09 1.73 7.02 -39.37 -0.28 1.46 15 21 F -0.11 -2.22 14.21 2.25 0.03 -2.19 15 22 H 0.29 8.67 6.39 -40.82 -0.26 8.41 15 23 H 0.34 7.70 6.11 -39.29 -0.24 7.46 15 24 H 0.30 6.01 9.06 -39.29 -0.36 5.65 15 25 H 0.39 2.74 9.06 45.56 0.41 3.16 15 26 H 0.15 1.62 8.06 -52.49 -0.42 1.20 15 LS Contribution 246.28 15.07 3.71 3.71 Total: -1.00 -31.34 246.28 -3.84 -35.18 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -0.44 Total: 9.16 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -2.57 Total: -10.72 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.70 Total: -44.94 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -0.26 Total: -6.29 kcal Atomic # 9 Polarization: -6.52 SS G_CDS: 0.11 Total: -6.41 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.08 Total: 20.31 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -31.34 -3.84 -35.18 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260107734.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.593 kcal (2) G-P(sol) polarization free energy of solvation -31.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds