Wall clock time and date at job start Mon Mar 30 2020 03:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 11 11 N 1.46902 * 109.47373 * 59.99759 * 9 7 2 12 12 C 1.50698 * 109.47465 * 180.02562 * 9 7 2 13 13 C 1.38349 * 119.98444 * 104.99959 * 12 9 7 14 14 F 1.35095 * 120.01551 * 0.02562 * 13 12 9 15 15 C 1.38874 * 119.97339 * 180.02562 * 13 12 9 16 16 O 1.36000 * 120.02801 * 179.97438 * 15 13 12 17 17 C 1.38642 * 119.94458 * 359.97438 * 15 13 12 18 18 C 1.38353 * 119.96870 * 0.02562 * 17 15 13 19 19 F 1.35101 * 119.98590 * 179.97438 * 18 17 15 20 20 C 1.38394 * 119.98226 * 284.72254 * 12 9 7 21 21 F 1.35102 * 119.97565 * 0.02562 * 20 12 9 22 22 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 23 23 H 1.00902 * 110.99590 * 59.99905 * 11 9 7 24 24 H 1.00896 * 111.00313 * 183.95752 * 11 9 7 25 25 H 0.96698 * 114.00406 * 89.99507 * 16 15 13 26 26 H 1.08000 * 120.01294 * 179.97438 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 1 0.6248 -2.5524 0.9029 11 7 0.4061 -2.5829 -1.1864 12 6 2.2305 -3.6445 0.0182 13 6 2.4441 -4.3656 1.1794 14 9 1.7746 -4.0435 2.3077 15 6 3.3471 -5.4207 1.1847 16 8 3.5583 -6.1300 2.3257 17 6 4.0330 -5.7504 0.0259 18 6 3.8176 -5.0277 -1.1341 19 9 4.4862 -5.3483 -2.2634 20 6 2.9115 -3.9781 -1.1395 21 9 2.6983 -3.2764 -2.2741 22 1 -0.4850 -0.8401 -0.0004 23 1 0.9638 -2.5356 -2.0259 24 1 -0.1578 -3.4195 -1.1735 25 1 2.9710 -6.8910 2.4302 26 1 4.7358 -6.5705 0.0288 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260107734.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:06 Heat of formation + Delta-G solvation = -173.841181 kcal Electronic energy + Delta-G solvation = -18203.491109 eV Core-core repulsion = 14639.031330 eV Total energy + Delta-G solvation = -3564.459779 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.69972 -50.11702 -49.77578 -40.62275 -38.31980 -36.42455 -33.54165 -31.28704 -30.31866 -27.81724 -25.21446 -23.96717 -22.83308 -19.81677 -19.53270 -19.36466 -18.75466 -17.96704 -17.61286 -17.09230 -16.76441 -16.30371 -16.05017 -15.85289 -15.75394 -15.58001 -15.42280 -15.00177 -14.37821 -14.09942 -13.52834 -13.26584 -12.63434 -12.57489 -12.35848 -12.06268 -11.92991 -11.02218 -10.54959 -9.99156 -9.70026 -9.49918 -8.48483 -6.35091 -0.51474 -0.35339 1.52931 1.61642 1.79006 1.86112 2.37911 2.58614 2.77899 2.86661 3.20931 3.29782 3.35821 3.75693 4.09460 4.19556 4.37206 4.54687 4.65130 4.72799 5.04181 5.40144 5.74543 6.05683 6.51024 6.56854 6.67603 6.88987 7.55749 8.89489 Molecular weight = 247.06amu Principal moments of inertia in cm(-1) A = 0.024252 B = 0.008958 C = 0.007691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.279979 B = 3125.041206 C = 3639.934009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.007 4.007 3 Si 1.112 2.888 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.282 1.282 7 C -0.622 4.622 8 H 0.036 0.964 9 C 0.245 3.755 10 H 0.024 0.976 11 N -0.840 5.840 12 C -0.126 4.126 13 C 0.073 3.927 14 F -0.131 7.131 15 C 0.118 3.882 16 O -0.480 6.480 17 C -0.119 4.119 18 C 0.080 3.920 19 F -0.122 7.122 20 C 0.068 3.932 21 F -0.124 7.124 22 H 0.279 0.721 23 H 0.338 0.662 24 H 0.319 0.681 25 H 0.421 0.579 26 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.272 -14.581 0.509 16.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.211 4.211 3 Si 0.935 3.065 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.207 1.207 7 C -0.660 4.660 8 H 0.055 0.945 9 C 0.135 3.865 10 H 0.042 0.958 11 N -0.373 5.373 12 C -0.130 4.130 13 C 0.052 3.948 14 F -0.109 7.109 15 C 0.071 3.929 16 O -0.294 6.294 17 C -0.138 4.138 18 C 0.060 3.940 19 F -0.100 7.100 20 C 0.048 3.952 21 F -0.103 7.103 22 H 0.091 0.909 23 H 0.156 0.844 24 H 0.131 0.869 25 H 0.282 0.718 26 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 7.125 -11.854 0.816 13.854 hybrid contribution -0.023 -2.512 -0.489 2.560 sum 7.102 -14.366 0.327 16.029 Atomic orbital electron populations 1.70641 1.07634 1.32227 1.44179 1.27002 0.96698 1.05411 0.91990 0.83010 0.74084 0.71875 0.77574 1.19932 1.20298 1.20707 1.21902 0.93047 0.91882 1.59185 0.94542 1.18006 0.87987 0.89785 0.90738 0.95792 1.59233 1.29044 1.43536 1.05468 1.21199 1.01168 0.99131 0.91522 1.17925 0.96055 0.98391 0.82446 1.91476 1.78703 1.92287 1.48476 1.17873 0.94586 0.92837 0.87616 1.84848 1.62473 1.45926 1.36164 1.21253 1.02493 1.02218 0.87787 1.17371 0.95255 0.96561 0.84841 1.91538 1.78137 1.91783 1.48554 1.17323 1.00468 0.94119 0.83303 1.91372 1.93288 1.77676 1.47963 0.90925 0.84392 0.86935 0.71795 0.78141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.18 13.51 21.45 0.29 -55.89 15 2 C -0.01 -0.38 5.39 84.65 0.46 0.07 15 3 Si 1.11 51.61 29.90 68.60 2.05 53.66 15 4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 15 5 H -0.28 -12.20 7.11 99.48 0.71 -11.50 15 6 H -0.28 -12.90 7.11 99.48 0.71 -12.19 15 7 C -0.62 -35.54 8.65 25.60 0.22 -35.32 15 8 H 0.04 2.11 7.74 -2.91 -0.02 2.09 15 9 C 0.24 12.37 2.30 43.42 0.10 12.47 15 10 H 0.02 1.34 7.14 -2.38 -0.02 1.32 15 11 N -0.84 -39.95 7.66 -174.94 -1.34 -41.29 15 12 C -0.13 -5.20 4.89 -19.80 -0.10 -5.30 15 13 C 0.07 2.62 7.25 22.45 0.16 2.78 15 14 F -0.13 -5.16 16.10 44.97 0.72 -4.44 15 15 C 0.12 3.10 6.71 22.52 0.15 3.25 15 16 O -0.48 -9.85 13.37 -93.55 -1.25 -11.10 15 17 C -0.12 -2.70 9.96 22.39 0.22 -2.47 15 18 C 0.08 2.36 7.30 22.40 0.16 2.53 15 19 F -0.12 -3.46 17.18 44.97 0.77 -2.68 15 20 C 0.07 2.58 7.02 22.41 0.16 2.73 15 21 F -0.12 -5.14 14.21 44.97 0.64 -4.50 15 22 H 0.28 17.34 6.39 -92.70 -0.59 16.75 15 23 H 0.34 15.91 6.11 -89.69 -0.55 15.36 15 24 H 0.32 13.11 9.06 -89.70 -0.81 12.30 15 25 H 0.42 3.80 9.06 -74.06 -0.67 3.13 15 26 H 0.20 2.80 8.06 -2.91 -0.02 2.78 15 Total: -1.00 -69.60 246.28 2.86 -66.74 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -0.57 Total: 18.76 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 1.54 Total: -19.26 kcal Atomic # 7 Polarization: -96.12 SS G_CDS: -1.05 Total: -97.18 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -1.25 Total: -11.10 kcal Atomic # 9 Polarization: -13.76 SS G_CDS: 2.14 Total: -11.63 kcal Atomic # 14 Polarization: 51.61 SS G_CDS: 2.05 Total: 53.66 kcal Total: -69.60 2.86 -66.74 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260107734.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.099 kcal (2) G-P(sol) polarization free energy of solvation -69.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds