Wall clock time and date at job start Mon Mar 30 2020 03:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99599 * 2 1 4 4 H 1.48502 * 109.47254 * 89.99678 * 3 2 1 5 5 H 1.48494 * 109.47139 * 209.99910 * 3 2 1 6 6 H 1.48500 * 109.47350 * 330.00110 * 3 2 1 7 7 C 1.37873 * 120.00117 * 179.72679 * 2 1 3 8 8 H 1.07997 * 120.00321 * 5.20878 * 7 2 1 9 9 C 1.50705 * 119.99595 * 185.21565 * 7 2 1 10 10 H 1.08997 * 109.46939 * 305.39050 * 9 7 2 11 11 N 1.46898 * 109.47271 * 65.39875 * 9 7 2 12 12 C 1.50705 * 109.47005 * 185.39498 * 9 7 2 13 13 C 1.38646 * 120.01428 * 104.71967 * 12 9 7 14 14 O 1.35999 * 120.02858 * 0.02562 * 13 12 9 15 15 C 1.38867 * 119.94238 * 179.77152 * 13 12 9 16 16 F 1.35101 * 120.00989 * 180.22961 * 15 13 12 17 17 C 1.38348 * 119.97489 * 0.53120 * 15 13 12 18 18 C 1.38396 * 120.03319 * 359.72043 * 17 15 13 19 19 F 1.35094 * 119.97557 * 179.97438 * 18 17 15 20 20 C 1.38359 * 120.01540 * 285.00221 * 12 9 7 21 21 F 1.35096 * 119.98326 * 359.97201 * 20 12 9 22 22 H 0.97000 * 119.99649 * 174.99287 * 1 2 3 23 23 H 1.00902 * 110.99748 * 291.66120 * 11 9 7 24 24 H 1.00899 * 111.00574 * 55.61915 * 11 9 7 25 25 H 0.96697 * 113.99735 * 89.99075 * 14 13 12 26 26 H 1.08000 * 119.98188 * 179.70410 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7000 7 6 2.0046 -1.1940 0.0057 8 1 1.4680 -2.1278 -0.0748 9 6 3.5069 -1.1960 0.1244 10 1 3.9339 -0.5677 -0.6573 11 7 3.8949 -0.6718 1.4406 12 6 4.0209 -2.6046 -0.0267 13 6 4.6340 -2.9963 -1.2069 14 8 4.7724 -2.1097 -2.2288 15 6 5.1112 -4.2933 -1.3428 16 9 5.7130 -4.6752 -2.4905 17 6 4.9647 -5.1961 -0.3047 18 6 4.3479 -4.8055 0.8710 19 9 4.2049 -5.6881 1.8838 20 6 3.8759 -3.5092 1.0101 21 9 3.2740 -3.1292 2.1584 22 1 -0.4849 -0.8369 -0.0733 23 1 3.6824 0.3118 1.5151 24 1 3.4535 -1.1943 2.1824 25 1 5.5953 -1.6026 -2.2007 26 1 5.3315 -6.2061 -0.4120 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260317859.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:13 Heat of formation + Delta-G solvation = -149.878902 kcal Electronic energy + Delta-G solvation = -18208.178037 eV Core-core repulsion = 14644.757341 eV Total energy + Delta-G solvation = -3563.420697 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.056 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.22938 -48.87685 -48.25213 -39.38427 -36.30899 -35.03725 -32.01040 -29.93640 -28.95953 -26.03410 -23.60458 -22.58908 -20.59799 -18.60349 -18.24133 -17.75468 -17.38735 -16.62626 -16.22020 -15.69448 -15.35038 -15.00879 -14.59245 -14.44290 -14.25237 -13.97347 -13.53085 -13.08707 -12.82355 -12.59633 -12.14379 -11.96348 -11.19562 -11.11674 -10.70072 -10.31099 -10.03841 -9.32461 -8.78158 -8.64578 -8.28542 -7.78984 -6.60303 -4.37237 0.89969 1.06822 3.19980 3.27912 3.30120 3.41260 3.74985 4.14901 4.18913 4.26603 4.57424 4.80960 5.07261 5.12189 5.53283 5.71103 5.80413 6.00635 6.05460 6.18314 6.72732 6.92846 7.52361 7.72872 8.02085 8.14511 8.32018 8.65564 9.36211 10.72825 Molecular weight = 247.06amu Principal moments of inertia in cm(-1) A = 0.025572 B = 0.009382 C = 0.007745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.681756 B = 2983.871180 C = 3614.352485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.033 3.967 3 Si 1.048 2.952 4 H -0.279 1.279 5 H -0.274 1.274 6 H -0.283 1.283 7 C -0.618 4.618 8 H 0.058 0.942 9 C 0.210 3.790 10 H 0.068 0.932 11 N -0.860 5.860 12 C -0.027 4.027 13 C 0.089 3.911 14 O -0.469 6.469 15 C 0.090 3.910 16 F -0.127 7.127 17 C -0.173 4.173 18 C 0.082 3.918 19 F -0.126 7.126 20 C 0.087 3.913 21 F -0.110 7.110 22 H 0.271 0.729 23 H 0.325 0.675 24 H 0.340 0.660 25 H 0.389 0.611 26 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.384 -6.149 -0.412 12.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.174 4.174 3 Si 0.876 3.124 4 H -0.206 1.206 5 H -0.200 1.200 6 H -0.209 1.209 7 C -0.657 4.657 8 H 0.076 0.924 9 C 0.101 3.899 10 H 0.085 0.915 11 N -0.395 5.395 12 C -0.029 4.029 13 C 0.042 3.958 14 O -0.279 6.279 15 C 0.070 3.930 16 F -0.106 7.106 17 C -0.193 4.193 18 C 0.062 3.938 19 F -0.105 7.105 20 C 0.066 3.934 21 F -0.089 7.089 22 H 0.081 0.919 23 H 0.139 0.861 24 H 0.155 0.845 25 H 0.245 0.755 26 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 11.356 -4.952 -0.694 12.408 hybrid contribution -0.570 -1.609 0.280 1.729 sum 10.786 -6.561 -0.415 12.632 Atomic orbital electron populations 1.70792 1.06629 1.30925 1.44696 1.25853 0.96414 1.02408 0.92713 0.83928 0.75424 0.75574 0.77465 1.20618 1.19983 1.20943 1.22540 0.90106 0.95807 1.57276 0.92377 1.18437 0.95239 0.86173 0.90050 0.91478 1.59776 1.66393 1.07328 1.06009 1.20402 0.93887 0.98883 0.89727 1.17860 1.00903 0.88235 0.88816 1.84963 1.44750 1.53805 1.44350 1.17562 0.98877 0.93188 0.83357 1.91497 1.80883 1.91432 1.46759 1.20557 1.05469 1.01494 0.91808 1.17210 1.03563 0.86383 0.86681 1.91513 1.93980 1.67196 1.57781 1.17206 1.00054 0.91160 0.84960 1.91422 1.80606 1.90800 1.46031 0.91890 0.86087 0.84462 0.75459 0.82736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 13.70 55.43 0.76 -26.06 15 2 C 0.03 0.91 5.47 -17.82 -0.10 0.81 15 3 Si 1.05 23.82 25.47 -169.99 -4.33 19.49 15 4 H -0.28 -5.93 6.96 56.52 0.39 -5.54 15 5 H -0.27 -5.73 6.36 56.52 0.36 -5.37 15 6 H -0.28 -6.53 7.11 56.52 0.40 -6.12 15 7 C -0.62 -16.77 8.98 -34.44 -0.31 -17.08 15 8 H 0.06 1.74 7.97 -52.49 -0.42 1.32 15 9 C 0.21 4.80 2.27 -70.01 -0.16 4.64 15 10 H 0.07 1.52 5.66 -51.93 -0.29 1.23 15 11 N -0.86 -18.37 9.00 -6.65 -0.06 -18.43 15 12 C -0.03 -0.54 4.91 -104.42 -0.51 -1.05 15 13 C 0.09 1.59 6.68 -39.20 -0.26 1.33 15 14 O -0.47 -7.92 12.21 -19.74 -0.24 -8.16 15 15 C 0.09 1.42 7.31 -39.31 -0.29 1.14 15 16 F -0.13 -1.91 17.11 2.25 0.04 -1.87 15 17 C -0.17 -2.51 10.00 -39.48 -0.39 -2.91 15 18 C 0.08 1.37 7.30 -39.37 -0.29 1.08 15 19 F -0.13 -2.04 17.18 2.25 0.04 -2.01 15 20 C 0.09 1.70 7.01 -39.38 -0.28 1.42 15 21 F -0.11 -2.29 14.29 2.25 0.03 -2.25 15 22 H 0.27 8.14 8.72 -40.82 -0.36 7.79 15 23 H 0.32 6.84 5.43 -39.29 -0.21 6.63 15 24 H 0.34 7.35 6.27 -39.29 -0.25 7.10 15 25 H 0.39 4.48 9.06 45.56 0.41 4.89 15 26 H 0.15 1.75 8.06 -52.49 -0.42 1.32 15 LS Contribution 240.47 15.07 3.62 3.62 Total: -1.00 -29.93 240.47 -3.11 -33.03 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -0.38 Total: 13.25 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -2.59 Total: -10.62 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.70 Total: -44.49 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.24 Total: -8.16 kcal Atomic # 9 Polarization: -6.24 SS G_CDS: 0.11 Total: -6.13 kcal Atomic # 14 Polarization: 23.82 SS G_CDS: -4.33 Total: 19.49 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -29.93 -3.11 -33.03 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260317859.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.844 kcal (2) G-P(sol) polarization free energy of solvation -29.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds