Wall clock time and date at job start Mon Mar 30 2020 03:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99599 * 2 1 4 4 H 1.48502 * 109.47254 * 89.99678 * 3 2 1 5 5 H 1.48494 * 109.47139 * 209.99910 * 3 2 1 6 6 H 1.48500 * 109.47350 * 330.00110 * 3 2 1 7 7 C 1.37873 * 120.00117 * 179.72679 * 2 1 3 8 8 H 1.07997 * 120.00321 * 5.20878 * 7 2 1 9 9 C 1.50705 * 119.99595 * 185.21565 * 7 2 1 10 10 H 1.08997 * 109.46939 * 305.39050 * 9 7 2 11 11 N 1.46898 * 109.47271 * 65.39875 * 9 7 2 12 12 C 1.50705 * 109.47005 * 185.39498 * 9 7 2 13 13 C 1.38646 * 120.01428 * 104.71967 * 12 9 7 14 14 O 1.35999 * 120.02858 * 0.02562 * 13 12 9 15 15 C 1.38867 * 119.94238 * 179.77152 * 13 12 9 16 16 F 1.35101 * 120.00989 * 180.22961 * 15 13 12 17 17 C 1.38348 * 119.97489 * 0.53120 * 15 13 12 18 18 C 1.38396 * 120.03319 * 359.72043 * 17 15 13 19 19 F 1.35094 * 119.97557 * 179.97438 * 18 17 15 20 20 C 1.38359 * 120.01540 * 285.00221 * 12 9 7 21 21 F 1.35096 * 119.98326 * 359.97201 * 20 12 9 22 22 H 0.97000 * 119.99649 * 174.99287 * 1 2 3 23 23 H 1.00902 * 110.99748 * 291.66120 * 11 9 7 24 24 H 1.00899 * 111.00574 * 55.61915 * 11 9 7 25 25 H 0.96697 * 113.99735 * 89.99075 * 14 13 12 26 26 H 1.08000 * 119.98188 * 179.70410 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7000 7 6 2.0046 -1.1940 0.0057 8 1 1.4680 -2.1278 -0.0748 9 6 3.5069 -1.1960 0.1244 10 1 3.9339 -0.5677 -0.6573 11 7 3.8949 -0.6718 1.4406 12 6 4.0209 -2.6046 -0.0267 13 6 4.6340 -2.9963 -1.2069 14 8 4.7724 -2.1097 -2.2288 15 6 5.1112 -4.2933 -1.3428 16 9 5.7130 -4.6752 -2.4905 17 6 4.9647 -5.1961 -0.3047 18 6 4.3479 -4.8055 0.8710 19 9 4.2049 -5.6881 1.8838 20 6 3.8759 -3.5092 1.0101 21 9 3.2740 -3.1292 2.1584 22 1 -0.4849 -0.8369 -0.0733 23 1 3.6824 0.3118 1.5151 24 1 3.4535 -1.1943 2.1824 25 1 5.5953 -1.6026 -2.2007 26 1 5.3315 -6.2061 -0.4120 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260317859.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:13 Heat of formation + Delta-G solvation = -173.642532 kcal Electronic energy + Delta-G solvation = -18209.208506 eV Core-core repulsion = 14644.757341 eV Total energy + Delta-G solvation = -3564.451165 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.62484 -50.10830 -49.69967 -40.77211 -37.64504 -36.81175 -34.03457 -31.40896 -30.31318 -27.91511 -25.24212 -23.95389 -22.27252 -20.13608 -19.89643 -19.32160 -18.79122 -18.04781 -17.61284 -17.12984 -16.72947 -16.41841 -16.09155 -15.75887 -15.68750 -15.59775 -15.07070 -14.92942 -14.51975 -14.01121 -13.83159 -13.68502 -12.81536 -12.48437 -12.28393 -11.89455 -11.68745 -11.33472 -10.83158 -10.11168 -9.68180 -9.61550 -8.76238 -6.58485 -0.44929 -0.28059 1.38718 1.49257 1.63480 1.93891 2.38150 2.42556 2.82044 2.87841 2.96528 3.26058 3.41649 3.78542 4.14616 4.21446 4.40996 4.57066 4.61341 4.75801 5.13873 5.44990 5.56724 5.84660 6.24520 6.34064 6.60185 6.64508 7.24352 8.50456 Molecular weight = 247.06amu Principal moments of inertia in cm(-1) A = 0.025572 B = 0.009382 C = 0.007745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.681756 B = 2983.871180 C = 3614.352485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.020 4.020 3 Si 1.084 2.916 4 H -0.254 1.254 5 H -0.242 1.242 6 H -0.289 1.289 7 C -0.617 4.617 8 H 0.012 0.988 9 C 0.216 3.784 10 H 0.073 0.927 11 N -0.847 5.847 12 C -0.061 4.061 13 C 0.093 3.907 14 O -0.483 6.483 15 C 0.099 3.901 16 F -0.118 7.118 17 C -0.142 4.142 18 C 0.084 3.916 19 F -0.122 7.122 20 C 0.065 3.935 21 F -0.126 7.126 22 H 0.252 0.748 23 H 0.328 0.672 24 H 0.338 0.662 25 H 0.413 0.587 26 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.934 -6.622 -0.881 15.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.218 4.218 3 Si 0.904 3.096 4 H -0.179 1.179 5 H -0.166 1.166 6 H -0.215 1.215 7 C -0.657 4.657 8 H 0.030 0.970 9 C 0.106 3.894 10 H 0.091 0.909 11 N -0.381 5.381 12 C -0.063 4.063 13 C 0.045 3.955 14 O -0.296 6.296 15 C 0.079 3.921 16 F -0.096 7.096 17 C -0.162 4.162 18 C 0.064 3.936 19 F -0.101 7.101 20 C 0.044 3.956 21 F -0.105 7.105 22 H 0.061 0.939 23 H 0.142 0.858 24 H 0.153 0.847 25 H 0.273 0.727 26 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 13.944 -5.448 -1.157 15.015 hybrid contribution -1.329 -1.611 0.374 2.122 sum 12.615 -7.059 -0.783 14.477 Atomic orbital electron populations 1.70934 1.08064 1.29789 1.47967 1.27391 0.96309 1.06441 0.91695 0.83541 0.75472 0.71241 0.79323 1.17871 1.16593 1.21511 1.22714 0.93025 0.93840 1.56099 0.96962 1.18223 0.92181 0.88402 0.90625 0.90947 1.59729 1.65698 1.07420 1.05236 1.20239 0.96680 0.97935 0.91451 1.17915 1.00286 0.89332 0.87926 1.84894 1.46704 1.54186 1.43815 1.17437 0.98423 0.92412 0.83857 1.91533 1.80567 1.91187 1.46300 1.20910 1.02599 1.02819 0.89825 1.17182 1.03581 0.85372 0.87499 1.91527 1.93975 1.66759 1.57828 1.17518 1.00952 0.92562 0.84558 1.91369 1.81159 1.91126 1.46847 0.93910 0.85800 0.84707 0.72724 0.78568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.75 13.70 21.45 0.29 -57.45 15 2 C -0.02 -1.10 5.47 84.65 0.46 -0.64 15 3 Si 1.08 47.02 25.47 68.60 1.75 48.77 15 4 H -0.25 -9.92 6.96 99.48 0.69 -9.23 15 5 H -0.24 -9.18 6.36 99.48 0.63 -8.55 15 6 H -0.29 -12.76 7.11 99.48 0.71 -12.05 15 7 C -0.62 -34.35 8.98 25.60 0.23 -34.12 15 8 H 0.01 0.76 7.97 -2.91 -0.02 0.74 15 9 C 0.22 9.72 2.27 43.43 0.10 9.82 15 10 H 0.07 3.16 5.66 -2.39 -0.01 3.15 15 11 N -0.85 -35.25 9.00 -174.95 -1.57 -36.83 15 12 C -0.06 -2.42 4.91 -19.74 -0.10 -2.52 15 13 C 0.09 3.13 6.68 22.52 0.15 3.28 15 14 O -0.48 -15.22 12.21 -93.54 -1.14 -16.36 15 15 C 0.10 2.79 7.31 22.45 0.16 2.95 15 16 F -0.12 -3.07 17.11 44.97 0.77 -2.30 15 17 C -0.14 -3.57 10.00 22.33 0.22 -3.35 15 18 C 0.08 2.62 7.30 22.41 0.16 2.78 15 19 F -0.12 -3.70 17.18 44.97 0.77 -2.93 15 20 C 0.06 2.49 7.01 22.40 0.16 2.65 15 21 F -0.13 -5.31 14.29 44.97 0.64 -4.67 15 22 H 0.25 16.03 8.72 -92.71 -0.81 15.23 15 23 H 0.33 13.17 5.43 -89.69 -0.49 12.68 15 24 H 0.34 14.55 6.27 -89.69 -0.56 13.99 15 25 H 0.41 8.34 9.06 -74.06 -0.67 7.66 15 26 H 0.20 3.31 8.06 -2.91 -0.02 3.29 15 Total: -1.00 -66.51 240.47 2.51 -64.01 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: -0.56 Total: 26.91 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: 1.55 Total: -19.15 kcal Atomic # 7 Polarization: -93.00 SS G_CDS: -1.28 Total: -94.28 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -1.14 Total: -16.36 kcal Atomic # 9 Polarization: -12.08 SS G_CDS: 2.18 Total: -9.90 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 1.75 Total: 48.77 kcal Total: -66.51 2.51 -64.01 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260317859.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.635 kcal (2) G-P(sol) polarization free energy of solvation -66.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds