Wall clock time and date at job start Mon Mar 30 2020 03:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30523 * 1 3 3 Si 1.86802 * 119.99826 * 2 1 4 4 H 1.48501 * 109.46808 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46777 * 299.99648 * 3 2 1 6 6 H 1.48494 * 109.47394 * 59.99890 * 3 2 1 7 7 C 1.40537 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00055 * 166.28047 * 7 2 1 9 9 C 1.39871 * 120.00344 * 346.55877 * 7 2 1 10 10 C 1.47553 * 127.01973 * 325.91220 * 9 7 2 11 11 C 1.39381 * 133.44455 * 359.97438 * 10 9 7 12 12 C 1.37842 * 119.83228 * 180.02562 * 11 10 9 13 13 C 1.38668 * 120.31976 * 359.97438 * 12 11 10 14 14 C 1.38236 * 120.57953 * 0.02563 * 13 12 11 15 15 O 1.35923 * 120.05420 * 180.02562 * 14 13 12 16 16 C 1.39823 * 119.89693 * 359.97438 * 14 13 12 17 17 N 1.37871 * 132.42635 * 180.02562 * 16 14 13 18 18 H 0.97002 * 124.70672 * 0.03412 * 17 16 14 19 19 C 1.36854 * 110.58059 * 179.72445 * 17 16 14 20 20 C 1.46434 * 125.64869 * 180.31485 * 19 17 16 21 21 O 1.21651 * 120.00292 * 174.32723 * 20 19 17 22 22 O 1.34983 * 120.00153 * 354.32460 * 20 19 17 23 23 H 0.96998 * 120.00218 * 5.05444 * 1 2 3 24 24 H 1.08002 * 120.08736 * 0.02562 * 11 10 9 25 25 H 1.08002 * 119.84128 * 180.02562 * 12 11 10 26 26 H 1.08002 * 119.70945 * 180.02562 * 13 12 11 27 27 H 0.96701 * 113.99928 * 269.97825 * 15 14 13 28 28 H 0.96700 * 114.00037 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6178 0.0000 4 1 3.6992 1.3464 -0.0006 5 1 1.8804 2.3964 -1.2126 6 1 1.8805 2.3965 1.2124 7 6 2.0079 -1.2171 0.0005 8 1 3.0648 -1.2305 -0.2213 9 6 1.3374 -2.4117 0.2826 10 6 0.2110 -2.5990 1.2172 11 6 -0.4954 -1.7350 2.0522 12 6 -1.5259 -2.2210 2.8280 13 6 -1.8635 -3.5652 2.7812 14 6 -1.1731 -4.4354 1.9585 15 8 -1.5134 -5.7509 1.9206 16 6 -0.1249 -3.9603 1.1644 17 7 0.7197 -4.5820 0.2695 18 1 0.6944 -5.5267 0.0510 19 6 1.5943 -3.6798 -0.2729 20 6 2.6286 -3.9837 -1.2639 21 8 3.2840 -3.0840 -1.7547 22 8 2.8550 -5.2623 -1.6329 23 1 -0.4850 0.8367 -0.0740 24 1 -0.2360 -0.6873 2.0914 25 1 -2.0735 -1.5516 3.4748 26 1 -2.6729 -3.9354 3.3930 27 1 -1.0416 -6.2978 2.5635 28 1 3.5562 -5.3634 -2.2911 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260912179.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:10 Heat of formation + Delta-G solvation = -114.486408 kcal Electronic energy + Delta-G solvation = -17499.895927 eV Core-core repulsion = 14479.866705 eV Total energy + Delta-G solvation = -3020.029223 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.068 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.75667 -40.37558 -38.51158 -36.70311 -36.63961 -35.74755 -31.92809 -30.20972 -29.66131 -27.27943 -25.15607 -22.73903 -22.36158 -21.04684 -19.78841 -18.73430 -18.13457 -17.87500 -17.36812 -16.77034 -16.30736 -16.12578 -15.68355 -15.11326 -14.60813 -14.50925 -14.35364 -13.87659 -13.28963 -13.04341 -12.90268 -12.61601 -12.37768 -12.18060 -12.03145 -11.88082 -11.35199 -11.31823 -11.06054 -10.01945 -8.98702 -8.81278 -8.38489 -6.32453 0.10041 0.84676 1.17226 1.39908 1.54003 1.54777 2.20018 2.36328 2.45715 2.80313 2.98415 3.31174 3.52215 4.18366 4.38166 4.63151 4.76457 4.86311 5.01352 5.12676 5.29581 5.31043 5.59773 5.72575 5.76231 6.01032 6.12730 6.20544 6.49084 6.60722 6.82921 6.99771 7.13961 7.39978 8.19540 Molecular weight = 247.07amu Principal moments of inertia in cm(-1) A = 0.017095 B = 0.011557 C = 0.007069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.514960 B = 2422.228426 C = 3960.060407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.042 3.958 3 Si 0.985 3.015 4 H -0.266 1.266 5 H -0.263 1.263 6 H -0.249 1.249 7 C -0.435 4.435 8 H 0.078 0.922 9 C 0.118 3.882 10 C -0.149 4.149 11 C -0.022 4.022 12 C -0.186 4.186 13 C -0.096 4.096 14 C 0.034 3.966 15 O -0.501 6.501 16 C 0.110 3.890 17 N -0.580 5.580 18 H 0.412 0.588 19 C -0.204 4.204 20 C 0.528 3.472 21 O -0.572 6.572 22 O -0.517 6.517 23 H 0.299 0.701 24 H 0.114 0.886 25 H 0.146 0.854 26 H 0.155 0.845 27 H 0.394 0.606 28 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.137 -3.522 5.443 6.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.178 4.178 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.188 1.188 6 H -0.173 1.173 7 C -0.463 4.463 8 H 0.096 0.904 9 C 0.111 3.889 10 C -0.155 4.155 11 C -0.041 4.041 12 C -0.206 4.206 13 C -0.115 4.115 14 C -0.015 4.015 15 O -0.312 6.312 16 C -0.003 4.003 17 N -0.188 5.188 18 H 0.248 0.752 19 C -0.305 4.305 20 C 0.382 3.618 21 O -0.469 6.469 22 O -0.330 6.330 23 H 0.110 0.890 24 H 0.132 0.868 25 H 0.163 0.837 26 H 0.173 0.827 27 H 0.250 0.750 28 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -2.761 -3.067 5.089 6.552 hybrid contribution 1.263 -0.191 -0.649 1.433 sum -1.498 -3.258 4.440 5.708 Atomic orbital electron populations 1.69705 1.08824 1.31790 1.30986 1.26871 0.95642 1.04153 0.91177 0.85115 0.79113 0.75633 0.79654 1.19024 1.18806 1.17260 1.19310 0.96949 0.90782 1.39309 0.90357 1.18492 0.90074 0.90863 0.89519 1.19323 1.01724 0.92242 1.02218 1.20775 0.92935 0.98482 0.91920 1.20912 1.00032 0.95731 1.03921 1.21204 0.99597 0.93160 0.97534 1.17500 0.97270 0.84971 1.01723 1.84820 1.67376 1.16006 1.62972 1.19052 0.93418 0.93155 0.94688 1.40561 1.29942 1.09411 1.38888 0.75173 1.18842 1.06603 0.92034 1.12977 1.19366 0.81816 0.80120 0.80486 1.90802 1.51039 1.48003 1.57010 1.84956 1.58557 1.28854 1.60616 0.88975 0.86813 0.83657 0.82745 0.75011 0.72675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.60 10.09 21.93 0.22 -38.38 15 2 C 0.04 2.04 5.04 85.45 0.43 2.47 15 3 Si 0.99 37.45 29.59 68.60 2.03 39.48 15 4 H -0.27 -10.46 7.11 99.48 0.71 -9.76 15 5 H -0.26 -9.63 7.11 99.48 0.71 -8.92 15 6 H -0.25 -8.58 7.11 99.48 0.71 -7.87 15 7 C -0.44 -23.99 8.39 23.23 0.19 -23.80 15 8 H 0.08 4.51 7.07 -2.91 -0.02 4.49 15 9 C 0.12 6.51 5.72 -19.80 -0.11 6.39 15 10 C -0.15 -7.41 5.75 -20.04 -0.12 -7.53 15 11 C -0.02 -0.99 8.72 22.45 0.20 -0.80 15 12 C -0.19 -6.59 10.03 22.28 0.22 -6.37 15 13 C -0.10 -3.17 9.95 22.37 0.22 -2.95 15 14 C 0.03 1.26 6.73 22.65 0.15 1.41 15 15 O -0.50 -15.56 13.51 -92.68 -1.25 -16.81 15 16 C 0.11 4.97 7.15 39.08 0.28 5.25 15 17 N -0.58 -26.14 6.02 -174.70 -1.05 -27.19 15 18 H 0.41 16.11 8.96 -92.71 -0.83 15.28 15 19 C -0.20 -10.54 7.11 41.13 0.29 -10.24 15 20 C 0.53 25.62 8.27 69.96 0.58 26.20 15 21 O -0.57 -30.86 15.99 19.34 0.31 -30.55 15 22 O -0.52 -19.17 13.56 -59.00 -0.80 -19.97 15 23 H 0.30 12.92 8.30 -92.71 -0.77 12.15 15 24 H 0.11 5.14 6.35 -2.91 -0.02 5.12 15 25 H 0.15 4.10 8.06 -2.91 -0.02 4.08 15 26 H 0.15 3.90 8.06 -2.91 -0.02 3.88 15 27 H 0.39 8.16 9.06 -74.06 -0.67 7.49 15 28 H 0.42 11.02 8.98 -74.06 -0.67 10.35 15 Total: -1.00 -68.00 257.79 0.90 -67.10 By element: Atomic # 1 Polarization: 37.18 SS G_CDS: -0.90 Total: 36.28 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: 2.34 Total: -9.96 kcal Atomic # 7 Polarization: -64.74 SS G_CDS: -0.83 Total: -65.57 kcal Atomic # 8 Polarization: -65.59 SS G_CDS: -1.74 Total: -67.33 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 2.03 Total: 39.48 kcal Total: -68.00 0.90 -67.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260912179.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.383 kcal (2) G-P(sol) polarization free energy of solvation -68.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds