Wall clock time and date at job start Mon Mar 30 2020 03:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86793 * 119.99873 * 2 1 4 4 H 1.48499 * 109.47118 * 270.00054 * 3 2 1 5 5 H 1.48498 * 109.47443 * 30.00402 * 3 2 1 6 6 H 1.48505 * 109.47294 * 150.00226 * 3 2 1 7 7 C 1.39949 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99285 * 197.84373 * 7 2 1 9 9 C 1.41391 * 120.00394 * 17.83971 * 7 2 1 10 10 C 1.40709 * 120.24881 * 204.37955 * 9 7 2 11 11 C 1.37613 * 119.74954 * 180.29949 * 10 9 7 12 12 C 1.38641 * 120.24587 * 359.42635 * 11 10 9 13 13 C 1.50695 * 119.74960 * 180.30483 * 12 11 10 14 14 H 1.09000 * 111.02519 * 175.97669 * 13 12 11 15 15 C 1.52221 * 111.17227 * 300.29048 * 13 12 11 16 16 O 1.21358 * 127.82810 * 297.88527 * 15 13 12 17 17 N 1.34533 * 104.35706 * 117.86235 * 15 13 12 18 18 O 1.20065 * 115.08823 * 0.02562 * 17 15 13 19 19 C 1.33876 * 115.32839 * 0.02562 * 18 17 15 20 20 O 1.21251 * 127.73322 * 179.97438 * 19 18 17 21 21 C 1.38637 * 120.49856 * 0.59832 * 12 11 10 22 22 C 1.37615 * 120.24670 * 359.68232 * 21 12 11 23 23 H 0.97001 * 120.00110 * 359.97438 * 1 2 3 24 24 H 1.08007 * 120.12662 * 0.02562 * 10 9 7 25 25 H 1.07998 * 119.88111 * 179.72526 * 11 10 9 26 26 H 0.97003 * 122.45428 * 180.02562 * 17 15 13 27 27 H 1.08003 * 119.87587 * 179.70204 * 21 12 11 28 28 H 1.08004 * 120.12443 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6526 0.7001 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2120 -0.0005 8 1 3.0490 -1.2345 0.2861 9 6 1.3520 -2.4069 -0.3762 10 6 1.8258 -3.6499 0.0824 11 6 1.1833 -4.8069 -0.2946 12 6 0.0659 -4.7502 -1.1134 13 6 -0.6332 -6.0237 -1.5137 14 1 -1.5296 -5.8112 -2.0964 15 6 0.3064 -6.9524 -2.2698 16 8 0.8620 -6.7478 -3.3292 17 7 0.3821 -8.0514 -1.4975 18 8 -0.2669 -8.0100 -0.4882 19 6 -0.9583 -6.8795 -0.2978 20 8 -1.6809 -6.5997 0.6348 21 6 -0.4095 -3.5311 -1.5715 22 6 0.2208 -2.3619 -1.2119 23 1 -0.4850 0.8400 0.0004 24 1 2.6933 -3.6961 0.7243 25 1 1.5478 -5.7624 0.0526 26 1 0.9214 -8.8208 -1.7384 27 1 -1.2779 -3.4990 -2.2129 28 1 -0.1510 -1.4133 -1.5703 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261021667.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:24 Heat of formation + Delta-G solvation = -13.768412 kcal Electronic energy + Delta-G solvation = -17218.909152 eV Core-core repulsion = 14203.247389 eV Total energy + Delta-G solvation = -3015.661763 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.068 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.36375 -38.54073 -38.46963 -37.41748 -34.17888 -32.21066 -31.70816 -29.59745 -28.87825 -25.57678 -23.41799 -21.26251 -21.19961 -20.57441 -19.26095 -17.96790 -17.43546 -16.89733 -15.57685 -15.37694 -14.91253 -14.68428 -14.28255 -14.16605 -13.97613 -13.01047 -12.92367 -12.39360 -12.13487 -11.75801 -11.30467 -11.24768 -11.05244 -10.82255 -10.57793 -9.85653 -9.73645 -9.57317 -9.22687 -8.80600 -7.64801 -7.50710 -6.91564 -4.51513 1.80952 2.14145 2.44968 2.61770 2.91073 3.00488 3.04172 3.06649 3.33999 3.82906 4.14638 4.48649 4.63749 5.31090 5.57044 5.59610 6.02989 6.19444 6.28500 6.78517 6.90720 7.03995 7.14615 7.26916 7.41823 7.59743 7.66894 7.84535 7.88682 8.10923 8.34472 8.46805 8.72581 8.78814 10.02343 Molecular weight = 247.07amu Principal moments of inertia in cm(-1) A = 0.042613 B = 0.005689 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.925203 B = 4920.883214 C = 5083.018391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.454 4.454 8 H 0.082 0.918 9 C 0.118 3.882 10 C -0.220 4.220 11 C -0.077 4.077 12 C -0.211 4.211 13 C -0.115 4.115 14 H 0.149 0.851 15 C 0.497 3.503 16 O -0.477 6.477 17 N -0.558 5.558 18 O -0.093 6.093 19 C 0.480 3.520 20 O -0.412 6.412 21 C -0.072 4.072 22 C -0.165 4.165 23 H 0.284 0.716 24 H 0.097 0.903 25 H 0.082 0.918 26 H 0.447 0.553 27 H 0.094 0.906 28 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.704 -8.665 -2.459 9.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.482 4.482 8 H 0.100 0.900 9 C 0.115 3.885 10 C -0.240 4.240 11 C -0.095 4.095 12 C -0.213 4.213 13 C -0.138 4.138 14 H 0.167 0.833 15 C 0.284 3.716 16 O -0.348 6.348 17 N -0.260 5.260 18 O -0.112 6.112 19 C 0.320 3.680 20 O -0.290 6.290 21 C -0.090 4.090 22 C -0.184 4.184 23 H 0.095 0.905 24 H 0.115 0.885 25 H 0.100 0.900 26 H 0.298 0.702 27 H 0.112 0.888 28 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.038 -8.293 -2.400 8.696 hybrid contribution 0.505 0.347 0.066 0.616 sum -0.533 -7.946 -2.334 8.299 Atomic orbital electron populations 1.69817 1.07694 1.29691 1.33480 1.25986 0.94787 1.01617 0.92046 0.86242 0.80490 0.80160 0.79499 1.19071 1.20153 1.18480 1.19704 0.98298 0.91198 1.39013 0.90037 1.17686 0.90848 0.92039 0.87911 1.20894 1.03838 0.92489 1.06740 1.20249 0.95118 0.96714 0.97448 1.17782 1.02060 0.89253 1.12217 1.21356 1.01220 0.95726 0.95492 0.83339 1.21565 0.82928 0.82020 0.85116 1.90820 1.48108 1.75869 1.20037 1.42707 1.47296 1.21530 1.14466 1.83662 1.54957 1.42777 1.29840 1.23635 0.77265 0.79012 0.88113 1.90916 1.33107 1.70847 1.34129 1.20444 0.98144 0.91955 0.98496 1.21294 0.99362 0.96686 1.01074 0.90494 0.88513 0.90026 0.70211 0.88770 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.49 10.95 55.55 0.61 -18.88 15 2 C 0.08 1.82 5.14 -17.34 -0.09 1.73 15 3 Si 0.91 17.98 29.59 -169.99 -5.03 12.95 15 4 H -0.27 -5.19 7.11 56.52 0.40 -4.79 15 5 H -0.28 -5.33 7.11 56.52 0.40 -4.93 15 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 15 7 C -0.45 -11.64 9.05 -37.74 -0.34 -11.98 15 8 H 0.08 2.01 7.91 -52.48 -0.41 1.59 15 9 C 0.12 3.06 5.57 -106.83 -0.60 2.47 15 10 C -0.22 -5.31 9.80 -38.88 -0.38 -5.69 15 11 C -0.08 -1.70 8.90 -39.66 -0.35 -2.05 15 12 C -0.21 -4.47 5.02 -104.33 -0.52 -5.00 15 13 C -0.12 -1.94 3.41 -92.58 -0.32 -2.25 15 14 H 0.15 2.15 7.96 -51.93 -0.41 1.74 15 15 C 0.50 7.86 8.02 -10.34 -0.08 7.77 15 16 O -0.48 -8.93 18.03 5.49 0.10 -8.83 15 17 N -0.56 -6.80 6.47 31.59 0.20 -6.60 15 18 O -0.09 -1.26 10.92 -6.32 -0.07 -1.33 15 19 C 0.48 7.93 7.93 36.75 0.29 8.22 15 20 O -0.41 -7.94 18.02 -18.57 -0.33 -8.28 15 21 C -0.07 -1.61 9.66 -39.66 -0.38 -2.00 15 22 C -0.16 -4.14 8.70 -38.87 -0.34 -4.48 15 23 H 0.28 6.39 8.30 -40.82 -0.34 6.06 15 24 H 0.10 2.19 8.06 -52.48 -0.42 1.77 15 25 H 0.08 1.62 7.86 -52.49 -0.41 1.21 15 26 H 0.45 3.73 8.96 -40.82 -0.37 3.36 15 27 H 0.09 1.85 7.98 -52.48 -0.42 1.43 15 28 H 0.12 3.15 6.16 -52.48 -0.32 2.83 15 LS Contribution 259.71 15.07 3.91 3.91 Total: -1.00 -29.13 259.71 -5.63 -34.76 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -1.91 Total: 5.57 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -3.11 Total: -13.27 kcal Atomic # 7 Polarization: -26.29 SS G_CDS: 0.81 Total: -25.48 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.30 Total: -18.44 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.13 -5.63 -34.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261021667.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.993 kcal (2) G-P(sol) polarization free energy of solvation -29.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds