Wall clock time and date at job start Mon Mar 30 2020 03:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99831 * 2 1 4 4 H 1.48504 * 109.46844 * 239.99652 * 3 2 1 5 5 H 1.48496 * 109.47153 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47045 * 119.99717 * 3 2 1 7 7 C 1.37871 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00081 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46877 * 179.97438 * 9 7 2 11 11 C 1.34418 * 124.30037 * 269.69471 * 10 9 7 12 12 O 1.21315 * 126.23364 * 0.02562 * 11 10 9 13 13 C 1.49989 * 107.52737 * 179.89352 * 11 10 9 14 14 O 1.21349 * 127.57527 * 180.14522 * 13 11 10 15 15 C 1.47496 * 104.84496 * 0.36052 * 13 11 10 16 16 C 1.39500 * 132.98795 * 179.78781 * 15 13 11 17 17 C 1.38458 * 119.64969 * 179.97438 * 16 15 13 18 18 O 1.36003 * 120.02351 * 180.02562 * 17 16 15 19 19 C 1.38894 * 119.95442 * 0.02562 * 17 16 15 20 20 C 1.38195 * 120.63843 * 359.96966 * 19 17 16 21 21 C 1.38867 * 120.28011 * 0.04906 * 20 19 17 22 22 H 0.96998 * 119.99944 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.46978 * 60.00053 * 9 7 2 24 24 H 1.09000 * 109.46976 * 299.99298 * 9 7 2 25 25 H 1.07995 * 120.17579 * 359.97438 * 16 15 13 26 26 H 0.96696 * 113.99538 * 90.00056 * 18 17 16 27 27 H 1.08003 * 119.68464 * 179.97438 * 19 17 16 28 28 H 1.07992 * 119.86574 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.6908 -4.1922 -1.1099 12 8 2.4238 -3.8886 -2.2537 13 6 3.6278 -5.2805 -0.6771 14 8 4.2682 -6.0303 -1.3844 15 6 3.5959 -5.2426 0.7971 16 6 4.2378 -5.9935 1.7820 17 6 4.0016 -5.7158 3.1178 18 8 4.6237 -6.4428 4.0843 19 6 3.1289 -4.6943 3.4699 20 6 2.4904 -3.9472 2.4984 21 6 2.7137 -4.2104 1.1533 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6241 -2.5567 0.8904 25 1 4.9153 -6.7873 1.5042 26 1 5.4751 -6.0791 4.3632 27 1 2.9476 -4.4817 4.5132 28 1 1.8147 -3.1555 2.7863 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261359013.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:00 Heat of formation + Delta-G solvation = -83.649777 kcal Electronic energy + Delta-G solvation = -17139.231719 eV Core-core repulsion = 14120.539673 eV Total energy + Delta-G solvation = -3018.692046 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.068 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.90200 -40.21028 -39.60175 -38.44136 -36.26090 -35.03105 -32.83248 -30.93567 -28.97126 -27.59488 -24.92303 -23.54831 -22.82913 -21.25104 -19.56301 -18.91237 -18.51237 -17.98225 -17.25386 -16.91870 -16.77157 -16.08235 -15.95574 -15.54692 -15.16310 -15.04885 -14.48940 -13.99821 -13.74093 -13.64707 -13.36966 -13.08305 -12.82740 -12.66587 -12.29550 -12.07526 -11.67494 -11.06428 -10.74424 -10.60879 -10.23680 -8.99323 -8.31977 -6.49380 -1.15589 0.11407 0.62133 1.37661 1.40877 1.44337 1.51798 1.80489 2.31293 2.39486 2.55537 2.98812 3.16285 3.40737 3.53304 3.96825 4.13474 4.33992 4.65863 4.72333 4.86446 4.95623 5.01127 5.20695 5.26929 5.53639 5.56019 5.74040 5.82372 5.99125 6.46372 6.63689 6.93856 7.21946 8.74503 Molecular weight = 247.07amu Principal moments of inertia in cm(-1) A = 0.022204 B = 0.007539 C = 0.006183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.743965 B = 3713.368303 C = 4527.202349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.022 3.978 3 Si 0.967 3.033 4 H -0.279 1.279 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.559 4.559 8 H 0.055 0.945 9 C 0.254 3.746 10 N -0.531 5.531 11 C 0.471 3.529 12 O -0.501 6.501 13 C 0.404 3.596 14 O -0.402 6.402 15 C -0.241 4.241 16 C -0.026 4.026 17 C 0.074 3.926 18 O -0.494 6.494 19 C -0.049 4.049 20 C -0.131 4.131 21 C 0.181 3.819 22 H 0.272 0.728 23 H 0.018 0.982 24 H 0.053 0.947 25 H 0.159 0.841 26 H 0.413 0.587 27 H 0.176 0.824 28 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.176 -8.822 11.952 16.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.179 4.179 3 Si 0.791 3.209 4 H -0.205 1.205 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.597 4.597 8 H 0.074 0.926 9 C 0.136 3.864 10 N -0.253 5.253 11 C 0.256 3.744 12 O -0.376 6.376 13 C 0.276 3.724 14 O -0.273 6.273 15 C -0.245 4.245 16 C -0.045 4.045 17 C 0.029 3.971 18 O -0.307 6.307 19 C -0.067 4.067 20 C -0.152 4.152 21 C 0.085 3.915 22 H 0.081 0.919 23 H 0.036 0.964 24 H 0.071 0.929 25 H 0.177 0.823 26 H 0.272 0.728 27 H 0.194 0.806 28 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.623 -9.193 10.808 16.107 hybrid contribution 0.264 1.470 -0.620 1.617 sum 7.887 -7.723 10.188 15.021 Atomic orbital electron populations 1.70001 1.07376 1.28837 1.49407 1.25735 0.95760 1.02730 0.93671 0.85464 0.78379 0.77918 0.79114 1.20499 1.20099 1.18260 1.21491 0.93383 0.91198 1.53588 0.92635 1.19266 0.86981 0.81890 0.98282 1.46123 1.42007 1.32224 1.04914 1.21499 0.83017 0.84935 0.84918 1.90699 1.60193 1.66051 1.20643 1.22421 0.78838 0.81130 0.89981 1.90517 1.35977 1.36387 1.64400 1.20106 1.07392 1.03671 0.93363 1.21162 0.96019 0.96713 0.90613 1.18010 0.98360 0.93955 0.86821 1.84860 1.39819 1.51654 1.54328 1.21759 0.93013 0.90955 1.01021 1.20556 1.03756 1.02807 0.88064 1.18903 0.92520 0.91028 0.89094 0.91852 0.96423 0.92904 0.82306 0.72761 0.80644 0.83951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.37 13.29 21.45 0.28 -51.09 15 2 C 0.02 1.19 5.46 84.65 0.46 1.65 15 3 Si 0.97 42.06 29.54 68.60 2.03 44.09 15 4 H -0.28 -12.33 7.11 99.48 0.71 -11.62 15 5 H -0.28 -11.58 7.11 99.48 0.71 -10.87 15 6 H -0.26 -10.52 7.11 99.48 0.71 -9.81 15 7 C -0.56 -30.17 9.39 25.60 0.24 -29.93 15 8 H 0.06 3.01 7.81 -2.91 -0.02 2.99 15 9 C 0.25 12.82 5.54 85.63 0.47 13.30 15 10 N -0.53 -23.13 2.73 -635.61 -1.73 -24.86 15 11 C 0.47 21.33 8.16 87.49 0.71 22.04 15 12 O -0.50 -26.30 17.69 -3.14 -0.06 -26.35 15 13 C 0.40 15.15 7.97 27.91 0.22 15.37 15 14 O -0.40 -15.62 18.03 -3.24 -0.06 -15.68 15 15 C -0.24 -7.43 6.33 -20.01 -0.13 -7.56 15 16 C -0.03 -0.59 10.05 22.63 0.23 -0.36 15 17 C 0.07 1.39 6.70 22.48 0.15 1.54 15 18 O -0.49 -6.78 13.51 -93.59 -1.26 -8.04 15 19 C -0.05 -0.93 9.96 22.42 0.22 -0.71 15 20 C -0.13 -3.57 9.77 22.41 0.22 -3.36 15 21 C 0.18 6.22 6.74 38.59 0.26 6.48 15 22 H 0.27 14.32 8.31 -92.71 -0.77 13.55 15 23 H 0.02 1.00 7.97 -2.39 -0.02 0.99 15 24 H 0.05 2.59 7.72 -2.39 -0.02 2.57 15 25 H 0.16 2.92 8.06 -2.91 -0.02 2.90 15 26 H 0.41 1.53 9.06 -74.06 -0.67 0.86 15 27 H 0.18 2.15 8.06 -2.91 -0.02 2.12 15 28 H 0.14 3.98 7.77 -2.91 -0.02 3.96 15 Total: -1.00 -68.66 266.92 2.82 -65.84 By element: Atomic # 1 Polarization: -2.93 SS G_CDS: 0.55 Total: -2.38 kcal Atomic # 6 Polarization: 15.41 SS G_CDS: 3.07 Total: 18.47 kcal Atomic # 7 Polarization: -74.50 SS G_CDS: -1.45 Total: -75.95 kcal Atomic # 8 Polarization: -48.69 SS G_CDS: -1.38 Total: -50.07 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -68.66 2.82 -65.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261359013.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.807 kcal (2) G-P(sol) polarization free energy of solvation -68.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds