Wall clock time and date at job start Mon Mar 30 2020 03:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86799 * 120.00305 * 2 1 4 4 H 1.48495 * 109.47205 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46986 * 299.99891 * 3 2 1 6 6 H 1.48499 * 109.47112 * 59.99940 * 3 2 1 7 7 C 1.39942 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99942 * 197.74031 * 7 2 1 9 9 C 1.41407 * 119.99930 * 17.73428 * 7 2 1 10 10 C 1.40771 * 120.21356 * 24.61880 * 9 7 2 11 11 C 1.37631 * 119.87118 * 180.23386 * 10 9 7 12 12 C 1.38540 * 120.31706 * 359.78034 * 11 10 9 13 13 C 1.39192 * 120.43787 * 359.96413 * 12 11 10 14 14 N 1.40255 * 119.94099 * 180.02562 * 13 12 11 15 15 C 1.36985 * 127.17800 * 129.66048 * 14 13 12 16 16 N 1.30303 * 107.29193 * 179.89192 * 15 14 13 17 17 N 1.28517 * 110.14718 * 0.38131 * 16 15 14 18 18 C 1.31285 * 109.91932 * 359.75822 * 17 16 15 19 19 S 1.76200 * 126.49907 * 179.97438 * 18 17 16 20 20 C 1.38228 * 120.11338 * 359.97438 * 13 12 11 21 21 H 0.97000 * 119.99898 * 0.02562 * 1 2 3 22 22 H 1.08004 * 120.06389 * 359.97000 * 10 9 7 23 23 H 1.08009 * 119.84212 * 179.76659 * 11 10 9 24 24 H 1.08002 * 119.78297 * 179.97438 * 12 11 10 25 25 H 1.07996 * 126.35331 * 0.03604 * 15 14 13 26 26 H 1.41002 * 100.00081 * 270.02164 * 19 18 17 27 27 H 1.07999 * 120.15561 * 180.02562 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8837 2.3964 -1.2125 6 1 1.8837 2.3964 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0494 -1.2343 0.2844 9 6 1.3513 -2.4073 -0.3741 10 6 0.2210 -2.3625 -1.2121 11 6 -0.4156 -3.5299 -1.5673 12 6 0.0533 -4.7499 -1.1079 13 6 1.1729 -4.8097 -0.2830 14 7 1.6389 -6.0505 0.1757 15 6 2.9219 -6.5266 0.1154 16 7 2.9202 -7.7137 0.6526 17 7 1.7340 -8.0233 1.0384 18 6 0.9059 -7.0402 0.7712 19 16 -0.8220 -7.0028 1.1140 20 6 1.8268 -3.6485 0.0839 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1484 -1.4136 -1.5720 23 1 -1.2850 -3.4947 -2.2072 24 1 -0.4532 -5.6606 -1.3917 25 1 3.7768 -6.0124 -0.2983 26 1 -1.3212 -7.5549 -0.0836 27 1 2.6958 -3.6942 0.7235 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313524217.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:09 Heat of formation + Delta-G solvation = 91.145360 kcal Electronic energy + Delta-G solvation = -14869.736092 eV Core-core repulsion = 12333.669354 eV Total energy + Delta-G solvation = -2536.066738 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 247.047 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.15919 -39.70333 -36.45332 -34.90360 -32.14782 -31.70974 -30.34212 -27.38813 -25.04188 -23.89129 -22.66391 -22.35264 -20.27336 -18.79648 -17.79930 -17.29949 -17.14809 -16.62029 -16.30729 -15.63600 -15.29439 -14.90359 -14.27596 -13.69956 -13.28850 -13.10244 -13.07328 -12.77819 -12.65573 -12.22195 -11.99952 -11.89482 -11.78158 -11.34171 -11.09115 -10.53922 -9.64963 -9.39920 -9.28786 -8.72861 -6.45365 -0.12501 0.10609 0.79737 0.83291 1.33915 1.41967 1.49490 1.53801 1.57014 1.72874 2.19730 2.60516 3.49362 3.56036 3.90717 4.17770 4.30858 4.38443 4.60919 4.86656 4.92517 5.09674 5.17471 5.23970 5.63328 5.75368 5.91064 5.96799 6.20925 6.53641 6.81898 6.82758 7.31140 8.24535 Molecular weight = 247.05amu Principal moments of inertia in cm(-1) A = 0.035080 B = 0.006157 C = 0.005620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.981742 B = 4546.833566 C = 4980.584530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.041 3.959 3 Si 0.980 3.020 4 H -0.258 1.258 5 H -0.263 1.263 6 H -0.269 1.269 7 C -0.487 4.487 8 H 0.081 0.919 9 C 0.096 3.904 10 C -0.168 4.168 11 C -0.086 4.086 12 C -0.213 4.213 13 C 0.125 3.875 14 N -0.400 5.400 15 C 0.186 3.814 16 N -0.322 5.322 17 N -0.272 5.272 18 C 0.139 3.861 19 S -0.004 6.004 20 C -0.221 4.221 21 H 0.293 0.707 22 H 0.114 0.886 23 H 0.129 0.871 24 H 0.108 0.892 25 H 0.255 0.745 26 H 0.124 0.876 27 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.743 -2.809 -2.435 3.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.176 4.176 3 Si 0.801 3.199 4 H -0.182 1.182 5 H -0.187 1.187 6 H -0.194 1.194 7 C -0.516 4.516 8 H 0.099 0.901 9 C 0.093 3.907 10 C -0.188 4.188 11 C -0.105 4.105 12 C -0.233 4.233 13 C 0.035 3.965 14 N -0.087 5.087 15 C -0.102 4.102 16 N -0.163 5.163 17 N -0.116 5.116 18 C -0.236 4.236 19 S 0.145 5.855 20 C -0.242 4.242 21 H 0.104 0.896 22 H 0.132 0.868 23 H 0.147 0.853 24 H 0.127 0.873 25 H 0.271 0.729 26 H 0.089 0.911 27 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.267 -3.889 -1.527 4.366 hybrid contribution 0.585 1.514 -1.273 2.062 sum -0.682 -2.376 -2.800 3.735 Atomic orbital electron populations 1.69827 1.08887 1.31062 1.34003 1.26696 0.95460 1.04390 0.91048 0.85171 0.79517 0.76256 0.78959 1.18165 1.18729 1.19356 1.19876 0.98559 0.92019 1.41146 0.90080 1.17709 0.91844 0.91898 0.89268 1.21505 0.99134 0.97692 1.00428 1.20815 0.99060 0.91449 0.99129 1.20293 0.99448 0.97880 1.05725 1.17416 0.98450 0.80568 1.00072 1.44874 1.08968 1.13747 1.41063 1.27573 0.88730 0.93075 1.00855 1.73999 1.14090 1.12763 1.15448 1.74638 0.96542 1.22477 1.17973 1.26456 1.01180 0.89658 1.06305 1.86903 0.88060 1.83722 1.26816 1.20857 1.04868 0.91039 1.07447 0.89631 0.86841 0.85299 0.87347 0.72881 0.91142 0.87741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.11 10.96 21.83 0.24 -37.87 15 2 C 0.04 1.86 5.14 85.26 0.44 2.29 15 3 Si 0.98 34.45 29.59 68.60 2.03 36.48 15 4 H -0.26 -8.95 7.11 99.48 0.71 -8.24 15 5 H -0.26 -8.86 7.11 99.48 0.71 -8.16 15 6 H -0.27 -9.22 7.11 99.48 0.71 -8.51 15 7 C -0.49 -23.48 9.05 23.46 0.21 -23.27 15 8 H 0.08 3.78 7.91 -2.91 -0.02 3.75 15 9 C 0.10 4.59 5.57 -21.31 -0.12 4.47 15 10 C -0.17 -7.66 8.69 22.75 0.20 -7.47 15 11 C -0.09 -3.37 10.02 22.20 0.22 -3.15 15 12 C -0.21 -8.07 8.98 22.57 0.20 -7.87 15 13 C 0.12 4.97 5.92 38.02 0.22 5.19 15 14 N -0.40 -14.77 2.91 -349.81 -1.02 -15.79 15 15 C 0.19 6.16 12.53 179.69 2.25 8.41 15 16 N -0.32 -11.88 12.17 -59.18 -0.72 -12.60 15 17 N -0.27 -10.47 12.23 -56.69 -0.69 -11.16 15 18 C 0.14 5.06 8.21 179.47 1.47 6.53 15 19 S 0.00 -0.13 24.84 -56.49 -1.40 -1.54 15 20 C -0.22 -9.67 9.46 22.84 0.22 -9.45 15 21 H 0.29 12.32 8.30 -92.71 -0.77 11.55 15 22 H 0.11 5.40 6.16 -2.91 -0.02 5.38 15 23 H 0.13 4.27 8.06 -2.91 -0.02 4.25 15 24 H 0.11 3.65 7.64 -2.91 -0.02 3.63 15 25 H 0.26 6.25 8.06 -2.91 -0.02 6.22 15 26 H 0.12 3.00 9.55 73.80 0.70 3.71 15 27 H 0.10 4.41 8.06 -2.91 -0.02 4.38 15 Total: -1.00 -54.49 261.31 5.68 -48.81 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 1.92 Total: 17.97 kcal Atomic # 6 Polarization: -29.62 SS G_CDS: 5.32 Total: -24.30 kcal Atomic # 7 Polarization: -75.23 SS G_CDS: -2.19 Total: -77.43 kcal Atomic # 14 Polarization: 34.45 SS G_CDS: 2.03 Total: 36.48 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -1.40 Total: -1.54 kcal Total: -54.49 5.68 -48.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313524217.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.956 kcal (2) G-P(sol) polarization free energy of solvation -54.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds