Wall clock time and date at job start Mon Mar 30 2020 03:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34749 * 117.00164 * 2 1 4 4 O 1.21455 * 119.99456 * 0.02562 * 3 2 1 5 5 C 1.47772 * 119.99861 * 179.97438 * 3 2 1 6 6 N 1.30769 * 125.04376 * 0.02562 * 5 3 2 7 7 C 1.34714 * 108.89545 * 180.02562 * 6 5 3 8 8 C 1.40323 * 133.53227 * 180.02562 * 7 6 5 9 9 C 1.38046 * 120.26518 * 179.97438 * 8 7 6 10 10 C 1.38065 * 120.80510 * 0.05068 * 9 8 7 11 11 C 1.40602 * 120.24928 * 359.97190 * 10 9 8 12 12 C 1.41034 * 120.30997 * 180.02562 * 11 10 9 13 13 H 1.08007 * 119.99842 * 204.56241 * 12 11 10 14 14 C 1.40014 * 120.00558 * 24.56369 * 12 11 10 15 15 N 1.30814 * 119.99546 * 17.88856 * 14 12 11 16 16 Si 1.86800 * 120.00293 * 197.89343 * 14 12 11 17 17 H 1.48495 * 109.47173 * 59.99713 * 16 14 12 18 18 H 1.48495 * 109.46774 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46808 * 299.99362 * 16 14 12 20 20 C 1.40322 * 106.76072 * 359.97438 * 7 6 5 21 21 O 1.34584 * 106.49707 * 0.02562 * 20 7 6 22 22 H 1.08995 * 109.46688 * 299.99927 * 1 2 3 23 23 H 1.08999 * 109.46856 * 59.99777 * 1 2 3 24 24 H 1.09002 * 109.46910 * 179.97438 * 1 2 3 25 25 H 1.08008 * 119.86551 * 0.02562 * 8 7 6 26 26 H 1.07999 * 119.59308 * 180.02562 * 9 8 7 27 27 H 1.07997 * 119.86965 * 179.97438 * 10 9 8 28 28 H 0.96996 * 120.00210 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4023 2.2192 0.0005 5 6 3.5395 1.2779 0.0006 6 7 4.3454 0.2480 0.0006 7 6 5.6180 0.6898 0.0018 8 6 6.8647 0.0457 0.0019 9 6 8.0301 0.7856 0.0027 10 6 7.9913 2.1657 0.0045 11 6 6.7574 2.8397 0.0049 12 6 6.7163 4.2494 0.0062 13 1 5.8502 4.7641 0.3953 14 6 7.7983 4.9819 -0.4970 15 7 8.6765 4.4013 -1.2734 16 14 7.9879 6.7880 -0.0595 17 1 8.1124 6.9301 1.4134 18 1 9.2057 7.3304 -0.7134 19 1 6.7965 7.5390 -0.5303 20 6 5.5596 2.0918 0.0019 21 8 4.2544 2.4199 0.0013 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 6.9126 -1.0333 0.0005 26 1 8.9837 0.2787 0.0024 27 1 8.9124 2.7296 0.0056 28 1 9.4264 4.9085 -1.6218 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396114194.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:35 Heat of formation + Delta-G solvation = -64.393788 kcal Electronic energy + Delta-G solvation = -17005.984475 eV Core-core repulsion = 13988.127431 eV Total energy + Delta-G solvation = -3017.857044 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.068 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.18226 -41.56660 -38.63745 -37.80512 -36.33314 -35.08223 -31.78867 -31.08809 -28.76245 -27.46462 -25.97951 -23.74210 -22.64321 -22.27875 -19.68700 -19.32905 -18.58183 -18.29303 -18.23893 -17.38135 -17.08562 -16.48321 -15.59626 -14.91636 -14.78386 -14.56044 -14.47716 -13.71042 -13.36442 -13.15432 -13.10649 -12.98896 -12.46752 -12.41677 -12.30128 -12.08869 -12.00520 -11.98830 -11.41545 -11.11413 -9.60319 -9.34111 -8.85546 -6.53646 -0.69284 0.51343 0.67729 0.80310 1.35987 1.42396 1.48980 1.80847 2.14182 2.24034 2.56178 2.92148 3.33988 3.87038 4.09200 4.21769 4.32063 4.48792 4.67287 4.68188 4.74062 4.81287 4.86987 5.04304 5.25123 5.48500 5.70943 5.88042 5.97278 6.07918 6.32258 6.47359 6.58925 6.73260 8.10817 Molecular weight = 247.07amu Principal moments of inertia in cm(-1) A = 0.027930 B = 0.006594 C = 0.005424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.264982 B = 4245.050862 C = 5161.295035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.327 6.327 3 C 0.586 3.414 4 O -0.500 6.500 5 C 0.152 3.848 6 N -0.415 5.415 7 C 0.026 3.974 8 C -0.200 4.200 9 C -0.065 4.065 10 C -0.186 4.186 11 C 0.107 3.893 12 C -0.479 4.479 13 H 0.072 0.928 14 C 0.042 3.958 15 N -0.795 5.795 16 Si 0.987 3.013 17 H -0.256 1.256 18 H -0.255 1.255 19 H -0.266 1.266 20 C -0.077 4.077 21 O -0.195 6.195 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.149 0.851 25 H 0.136 0.864 26 H 0.149 0.851 27 H 0.133 0.867 28 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.764 -4.294 1.562 7.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.241 6.241 3 C 0.428 3.572 4 O -0.386 6.386 5 C -0.055 4.055 6 N -0.153 5.153 7 C -0.090 4.090 8 C -0.220 4.220 9 C -0.085 4.085 10 C -0.207 4.207 11 C 0.104 3.896 12 C -0.507 4.507 13 H 0.090 0.910 14 C -0.177 4.177 15 N -0.419 5.419 16 Si 0.807 3.193 17 H -0.180 1.180 18 H -0.178 1.178 19 H -0.190 1.190 20 C -0.127 4.127 21 O -0.084 6.084 22 H 0.094 0.906 23 H 0.093 0.907 24 H 0.167 0.833 25 H 0.154 0.846 26 H 0.167 0.833 27 H 0.151 0.849 28 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.078 -4.529 1.397 7.707 hybrid contribution -0.002 1.568 -0.006 1.568 sum -6.079 -2.961 1.391 6.904 Atomic orbital electron populations 1.23961 0.71703 1.07152 1.03770 1.86628 1.26672 1.27940 1.82891 1.18182 0.82681 0.83027 0.73346 1.90881 1.65171 1.36728 1.45842 1.23982 0.93628 0.79833 1.08091 1.70210 1.00960 1.29778 1.14380 1.19905 0.92292 0.90743 1.06032 1.19958 0.87450 0.99518 1.15111 1.21006 0.97759 0.93397 0.96307 1.21194 0.96059 0.93770 1.09641 1.16990 0.86577 0.93656 0.92375 1.19789 1.03624 0.91381 1.35867 0.90969 1.26753 0.93336 1.06073 0.91555 1.69763 1.10730 1.41282 1.20120 0.85161 0.79206 0.74862 0.80099 1.18049 1.17810 1.19013 1.21517 0.81944 0.95862 1.13406 1.84292 1.17452 1.33445 1.73177 0.90627 0.90718 0.83330 0.84617 0.83313 0.84919 0.88760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.57 113.37 1.20 1.67 15 2 O -0.33 -9.82 10.55 -56.59 -0.60 -10.42 15 3 C 0.59 22.32 7.97 70.34 0.56 22.88 15 4 O -0.50 -20.04 16.89 23.30 0.39 -19.64 15 5 C 0.15 6.98 8.05 87.37 0.70 7.68 15 6 N -0.41 -19.38 11.28 -297.90 -3.36 -22.74 15 7 C 0.03 1.28 7.21 39.72 0.29 1.56 15 8 C -0.20 -8.68 10.11 22.73 0.23 -8.45 15 9 C -0.07 -2.74 9.98 22.18 0.22 -2.52 15 10 C -0.19 -9.08 8.69 22.81 0.20 -8.88 15 11 C 0.11 5.80 5.57 -21.29 -0.12 5.68 15 12 C -0.48 -25.63 9.04 23.39 0.21 -25.42 15 13 H 0.07 3.90 7.91 -2.91 -0.02 3.88 15 14 C 0.04 1.99 5.14 85.28 0.44 2.43 15 15 N -0.80 -38.00 10.96 21.84 0.24 -37.76 15 16 Si 0.99 36.06 29.60 68.60 2.03 38.09 15 17 H -0.26 -9.17 7.11 99.48 0.71 -8.47 15 18 H -0.25 -8.42 7.11 99.48 0.71 -7.71 15 19 H -0.27 -9.79 7.11 99.48 0.71 -9.08 15 20 C -0.08 -4.14 7.18 23.51 0.17 -3.97 15 21 O -0.19 -10.25 10.78 -3.42 -0.04 -10.29 15 22 H 0.07 1.27 8.14 -2.39 -0.02 1.25 15 23 H 0.07 1.27 8.14 -2.39 -0.02 1.25 15 24 H 0.15 1.50 8.14 -2.39 -0.02 1.48 15 25 H 0.14 5.04 8.06 -2.91 -0.02 5.01 15 26 H 0.15 4.94 8.06 -2.91 -0.02 4.91 15 27 H 0.13 6.43 6.15 -2.91 -0.02 6.41 15 28 H 0.30 12.66 8.30 -92.71 -0.77 11.89 15 Total: -1.00 -63.26 263.77 3.97 -59.29 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 1.21 Total: 10.83 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 4.10 Total: -7.35 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -3.12 Total: -60.50 kcal Atomic # 8 Polarization: -40.11 SS G_CDS: -0.24 Total: -40.35 kcal Atomic # 14 Polarization: 36.06 SS G_CDS: 2.03 Total: 38.09 kcal Total: -63.26 3.97 -59.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396114194.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.103 kcal (2) G-P(sol) polarization free energy of solvation -63.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds