Wall clock time and date at job start Mon Mar 30 2020 03:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30535 * 1 3 3 Si 1.86803 * 120.00466 * 2 1 4 4 H 1.48497 * 109.47276 * 240.00376 * 3 2 1 5 5 H 1.48503 * 109.46631 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47061 * 119.99984 * 3 2 1 7 7 C 1.40434 * 119.99842 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00344 * 179.97438 * 7 2 1 9 9 C 1.39975 * 119.99964 * 359.97438 * 7 2 1 10 10 N 1.32366 * 125.12543 * 180.02562 * 9 7 2 11 11 C 1.34164 * 108.90495 * 179.97438 * 10 9 7 12 12 C 1.41205 * 106.94494 * 359.97438 * 11 10 9 13 13 C 1.38447 * 119.66709 * 179.97438 * 12 11 10 14 14 C 1.38150 * 119.81568 * 0.02562 * 13 12 11 15 15 C 1.38908 * 120.59609 * 359.97438 * 14 13 12 16 16 C 1.36494 * 120.64568 * 0.02562 * 15 14 13 17 17 C 1.50708 * 120.10045 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.46769 * 265.01514 * 17 16 15 19 19 O 1.20826 * 120.00000 * 0.02562 * 18 17 16 20 20 O 1.34228 * 119.99577 * 180.02562 * 18 17 16 21 21 O 1.35090 * 125.12436 * 0.27851 * 9 7 2 22 22 H 0.97003 * 119.99593 * 359.97438 * 1 2 3 23 23 H 1.08004 * 120.09080 * 179.97438 * 13 12 11 24 24 H 1.07994 * 119.70327 * 180.02562 * 14 13 12 25 25 H 1.07998 * 119.67447 * 179.97438 * 15 14 13 26 26 H 1.08999 * 109.47540 * 25.01522 * 17 16 15 27 27 H 1.09005 * 109.46899 * 145.02125 * 17 16 15 28 28 H 0.96708 * 116.99624 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2395 1.6177 0.0000 4 1 3.0932 1.6964 -1.2125 5 1 1.2745 2.7464 0.0006 6 1 3.0932 1.6963 1.2124 7 6 2.0075 -1.2162 -0.0005 8 1 3.0875 -1.2163 -0.0010 9 6 1.3076 -2.4284 -0.0005 10 7 1.8643 -3.6293 -0.0005 11 6 0.8956 -4.5575 0.0000 12 6 -0.3361 -3.8670 0.0010 13 6 -1.5221 -4.5812 0.0012 14 6 -1.4922 -5.9623 0.0010 15 6 -0.2815 -6.6433 0.0001 16 6 0.9006 -5.9609 -0.0002 17 6 2.2070 -6.7122 -0.0006 18 6 2.7044 -6.8557 1.4147 19 8 2.0635 -6.3956 2.3298 20 8 3.8593 -7.4947 1.6586 21 8 -0.0379 -2.5490 -0.0054 22 1 -0.4850 0.8401 0.0004 23 1 -2.4681 -4.0600 0.0024 24 1 -2.4184 -6.5176 0.0008 25 1 -0.2755 -7.7233 0.0003 26 1 2.0577 -7.7006 -0.4353 27 1 2.9416 -6.1632 -0.5899 28 1 4.1372 -7.5620 2.5825 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396129669.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:23 Heat of formation + Delta-G solvation = -78.668252 kcal Electronic energy + Delta-G solvation = -17214.964644 eV Core-core repulsion = 14196.488613 eV Total energy + Delta-G solvation = -3018.476031 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.33614 -39.72463 -37.05095 -35.61309 -34.03700 -33.10577 -31.65520 -29.26522 -27.49376 -26.06902 -22.16295 -21.73582 -21.21315 -19.38838 -18.14970 -17.65512 -16.35336 -16.05713 -15.68472 -15.37941 -15.21536 -14.82559 -14.33121 -13.26676 -13.05524 -12.66660 -12.59367 -11.90139 -11.74137 -11.57693 -11.33406 -11.11360 -11.09393 -10.94158 -10.62721 -10.31731 -10.16543 -10.04878 -9.56865 -8.71348 -7.72602 -7.38579 -7.25118 -5.02282 1.87228 2.39789 2.72911 2.84375 2.86506 2.90989 3.56009 3.61409 3.72754 4.36110 4.66488 5.09935 5.20119 5.42666 5.68935 5.79387 5.87691 5.94996 6.26358 6.27645 6.37944 6.65551 6.84160 6.88942 7.08198 7.25303 7.40202 7.49366 7.82559 7.88539 8.17470 8.34778 8.35580 9.52375 9.75346 Molecular weight = 247.07amu Principal moments of inertia in cm(-1) A = 0.026141 B = 0.007119 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.867911 B = 3932.466365 C = 4785.678016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.066 3.934 3 Si 0.940 3.060 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.404 4.404 8 H 0.120 0.880 9 C 0.377 3.623 10 N -0.625 5.625 11 C 0.124 3.876 12 C -0.063 4.063 13 C -0.069 4.069 14 C -0.180 4.180 15 C -0.092 4.092 16 C -0.109 4.109 17 C -0.049 4.049 18 C 0.478 3.522 19 O -0.503 6.503 20 O -0.526 6.526 21 O -0.198 6.198 22 H 0.294 0.706 23 H 0.113 0.887 24 H 0.117 0.883 25 H 0.112 0.888 26 H 0.101 0.899 27 H 0.112 0.888 28 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.604 -6.249 -0.511 6.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.160 4.160 3 Si 0.762 3.238 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.437 4.437 8 H 0.137 0.863 9 C 0.197 3.803 10 N -0.360 5.360 11 C 0.001 3.999 12 C -0.115 4.115 13 C -0.088 4.088 14 C -0.200 4.200 15 C -0.111 4.111 16 C -0.112 4.112 17 C -0.086 4.086 18 C 0.320 3.680 19 O -0.389 6.389 20 O -0.339 6.339 21 O -0.094 6.094 22 H 0.106 0.894 23 H 0.131 0.869 24 H 0.135 0.865 25 H 0.130 0.870 26 H 0.119 0.881 27 H 0.130 0.870 28 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 1.758 -5.945 -0.673 6.236 hybrid contribution -0.392 0.856 0.713 1.181 sum 1.366 -5.089 0.041 5.269 Atomic orbital electron populations 1.69657 1.07939 1.31146 1.28860 1.26332 0.95206 1.02681 0.91818 0.85825 0.79686 0.77661 0.80662 1.18092 1.19703 1.18131 1.18768 0.95367 0.85618 1.43955 0.86271 1.22289 0.76302 0.93744 0.87916 1.70969 1.29776 0.97121 1.38177 1.19722 0.89786 0.93903 0.96514 1.20569 0.96801 0.83765 1.10386 1.19598 0.94133 0.92928 1.02102 1.20354 0.97083 0.92510 1.10098 1.20182 0.91677 0.98332 1.00899 1.17832 0.92950 0.89564 1.10858 1.19961 0.96769 1.01804 0.90076 1.23727 0.77535 0.73574 0.93165 1.90719 1.56770 1.44459 1.46929 1.84550 1.40857 1.72390 1.36056 1.85045 1.26177 1.21377 1.76803 0.89427 0.86908 0.86539 0.87020 0.88054 0.87030 0.74066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -18.83 11.93 55.57 0.66 -18.17 15 2 C 0.07 1.57 5.50 -17.28 -0.10 1.47 15 3 Si 0.94 17.19 29.56 -169.99 -5.03 12.17 15 4 H -0.26 -4.58 7.11 56.52 0.40 -4.18 15 5 H -0.27 -4.79 7.11 56.52 0.40 -4.39 15 6 H -0.26 -4.64 7.11 56.52 0.40 -4.24 15 7 C -0.40 -10.55 9.46 -38.11 -0.36 -10.91 15 8 H 0.12 2.91 7.85 -52.49 -0.41 2.50 15 9 C 0.38 10.73 7.60 -16.67 -0.13 10.60 15 10 N -0.62 -17.38 11.35 -11.08 -0.13 -17.50 15 11 C 0.12 3.20 6.93 -84.93 -0.59 2.61 15 12 C -0.06 -1.65 7.43 -38.38 -0.29 -1.93 15 13 C -0.07 -1.50 10.06 -39.54 -0.40 -1.90 15 14 C -0.18 -3.41 10.04 -39.37 -0.40 -3.81 15 15 C -0.09 -1.73 9.59 -39.96 -0.38 -2.11 15 16 C -0.11 -2.32 4.39 -104.46 -0.46 -2.78 15 17 C -0.05 -0.85 5.95 -29.03 -0.17 -1.02 15 18 C 0.48 8.72 8.32 36.01 0.30 9.02 15 19 O -0.50 -11.24 16.79 -18.75 -0.31 -11.55 15 20 O -0.53 -7.41 13.42 -39.25 -0.53 -7.93 15 21 O -0.20 -5.67 9.01 1.18 0.01 -5.66 15 22 H 0.29 6.51 8.29 -40.82 -0.34 6.17 15 23 H 0.11 2.21 8.06 -52.48 -0.42 1.79 15 24 H 0.12 1.77 8.06 -52.49 -0.42 1.35 15 25 H 0.11 1.68 8.05 -52.49 -0.42 1.25 15 26 H 0.10 1.35 8.04 -51.93 -0.42 0.93 15 27 H 0.11 1.99 8.12 -51.93 -0.42 1.57 15 28 H 0.40 3.90 9.10 45.56 0.41 4.31 15 LS Contribution 264.23 15.07 3.98 3.98 Total: -1.00 -32.84 264.23 -5.54 -38.38 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -1.24 Total: 7.06 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -2.96 Total: -0.76 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.54 Total: -35.67 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.83 Total: -25.15 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.17 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -32.84 -5.54 -38.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396129669.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.289 kcal (2) G-P(sol) polarization free energy of solvation -32.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds