Wall clock time and date at job start Mon Mar 30 2020 03:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86801 * 120.00061 * 2 1 4 4 H 1.48493 * 109.47511 * 269.99694 * 3 2 1 5 5 H 1.48500 * 109.47041 * 29.99851 * 3 2 1 6 6 H 1.48504 * 109.47101 * 149.99243 * 3 2 1 7 7 C 1.39840 * 120.00230 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99865 * 162.50402 * 7 2 1 9 9 C 1.41374 * 119.99865 * 342.50359 * 7 2 1 10 10 C 1.40102 * 119.94306 * 334.16873 * 9 7 2 11 11 C 1.40385 * 120.54471 * 180.27448 * 10 9 7 12 12 C 1.45595 * 128.96690 * 180.02562 * 11 10 9 13 13 C 1.32573 * 114.74382 * 179.97438 * 12 11 10 14 14 N 1.39022 * 124.28211 * 180.02562 * 13 12 11 15 15 S 1.75248 * 111.42599 * 0.02562 * 13 12 11 16 16 C 1.40190 * 119.24854 * 0.02562 * 11 10 9 17 17 C 1.41809 * 120.05009 * 359.97438 * 16 11 10 18 18 C 1.46845 * 119.85223 * 180.02562 * 17 16 11 19 19 O 1.21300 * 119.99986 * 179.97438 * 18 17 16 20 20 C 1.38758 * 120.29271 * 0.02562 * 17 16 11 21 21 H 0.97001 * 119.99675 * 0.02562 * 1 2 3 22 22 H 1.07998 * 119.72967 * 0.26871 * 10 9 7 23 23 H 1.07997 * 122.62558 * 359.97438 * 12 11 10 24 24 H 0.97002 * 119.99893 * 179.97438 * 14 13 12 25 25 H 0.96999 * 120.00343 * 359.97438 * 14 13 12 26 26 H 1.07996 * 120.00508 * 359.97438 * 18 17 16 27 27 H 1.08002 * 120.13119 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4907 2.0464 -1.4000 5 1 1.4405 2.6527 0.7000 6 1 3.5406 1.4402 0.7002 7 6 2.0083 -1.2110 0.0005 8 1 3.0508 -1.2327 -0.2806 9 6 1.3505 -2.4069 0.3692 10 6 0.2384 -2.3596 1.2200 11 6 -0.4208 -3.5398 1.5987 12 6 -1.5807 -3.7035 2.4633 13 6 -1.9745 -4.9582 2.6319 14 7 -3.0578 -5.3404 3.4149 15 16 -0.9564 -6.0736 1.7428 16 6 0.0463 -4.7703 1.1162 17 6 1.1722 -4.8143 0.2552 18 6 1.6575 -6.1056 -0.2481 19 8 2.6201 -6.1463 -0.9851 20 6 1.8174 -3.6426 -0.1138 21 1 -0.4850 0.8401 -0.0004 22 1 -0.1146 -1.4074 1.5876 23 1 -2.0811 -2.8684 2.9307 24 1 -3.2916 -6.2785 3.4945 25 1 -3.5798 -4.6692 3.8816 26 1 1.1574 -7.0191 0.0378 27 1 2.6744 -3.6791 -0.7700 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396235120.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:23 Heat of formation + Delta-G solvation = -3.901301 kcal Electronic energy + Delta-G solvation = -14733.061892 eV Core-core repulsion = 12160.580870 eV Total energy + Delta-G solvation = -2572.481022 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 247.041 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.76845 -37.56985 -35.82352 -33.86797 -31.89802 -30.06833 -27.36809 -25.50221 -23.82128 -21.94371 -20.43087 -19.57832 -17.54144 -17.05515 -16.21758 -15.60590 -15.14103 -14.76281 -14.42054 -13.72028 -13.64664 -13.15875 -12.88013 -12.83660 -12.14321 -11.66325 -11.30053 -11.21283 -11.02030 -10.72738 -10.40693 -10.10668 -9.87983 -9.44710 -9.01784 -8.74892 -8.37350 -7.13637 -6.89200 -6.65306 -4.47220 1.63565 2.02805 2.04517 2.75780 2.85364 3.02693 3.07464 3.24683 3.63600 3.85606 4.22857 4.47320 4.96149 5.43855 5.84377 6.03570 6.28174 6.33681 6.59143 6.73283 6.88175 7.02926 7.19041 7.27413 7.47424 7.60452 7.80424 7.90377 7.94520 8.09908 8.40600 8.68136 8.70334 10.05980 Molecular weight = 247.04amu Principal moments of inertia in cm(-1) A = 0.022552 B = 0.007953 C = 0.005982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.287226 B = 3519.944542 C = 4679.839172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.455 4.455 8 H 0.083 0.917 9 C 0.096 3.904 10 C -0.121 4.121 11 C -0.022 4.022 12 C -0.222 4.222 13 C 0.116 3.884 14 N -0.860 5.860 15 S 0.017 5.983 16 C -0.203 4.203 17 C -0.137 4.137 18 C 0.384 3.616 19 O -0.479 6.479 20 C -0.116 4.116 21 H 0.283 0.717 22 H 0.126 0.874 23 H 0.127 0.873 24 H 0.395 0.605 25 H 0.399 0.601 26 H 0.081 0.919 27 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.689 -5.088 5.157 8.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.484 4.484 8 H 0.101 0.899 9 C 0.092 3.908 10 C -0.143 4.143 11 C -0.029 4.029 12 C -0.258 4.258 13 C -0.100 4.100 14 N -0.405 5.405 15 S 0.269 5.731 16 C -0.319 4.319 17 C -0.143 4.143 18 C 0.245 3.755 19 O -0.355 6.355 20 C -0.137 4.137 21 H 0.094 0.906 22 H 0.144 0.856 23 H 0.144 0.856 24 H 0.223 0.777 25 H 0.228 0.772 26 H 0.098 0.902 27 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.389 -6.448 4.597 9.054 hybrid contribution -0.316 2.255 0.462 2.323 sum -4.705 -4.194 5.059 8.082 Atomic orbital electron populations 1.69830 1.07582 1.29584 1.34455 1.25910 0.94779 1.01490 0.92190 0.86267 0.80647 0.80285 0.79365 1.19373 1.20008 1.18304 1.19563 0.98174 0.90889 1.39794 0.89863 1.17368 0.91727 0.91992 0.89721 1.21277 0.98421 0.95336 0.99256 1.18678 0.94361 0.93046 0.96783 1.20377 1.02104 0.94714 1.08623 1.20945 0.94126 0.96144 0.98748 1.41449 1.32924 1.10083 1.56036 1.83214 1.28441 1.09435 1.51981 1.21762 1.04024 0.94202 1.11885 1.19603 0.97395 0.95223 1.02100 1.23881 0.82348 0.92439 0.76807 1.90446 1.25065 1.90396 1.29587 1.21443 1.00595 0.91284 1.00409 0.90581 0.85603 0.85562 0.77715 0.77158 0.90239 0.86590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.58 11.00 55.54 0.61 -18.97 15 2 C 0.07 1.80 5.12 -17.35 -0.09 1.71 15 3 Si 0.91 17.96 29.59 -169.99 -5.03 12.93 15 4 H -0.27 -5.26 7.11 56.52 0.40 -4.86 15 5 H -0.28 -5.30 7.11 56.52 0.40 -4.90 15 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 15 7 C -0.45 -11.55 9.02 -37.79 -0.34 -11.89 15 8 H 0.08 2.03 7.90 -52.49 -0.41 1.61 15 9 C 0.10 2.45 5.54 -107.10 -0.59 1.86 15 10 C -0.12 -3.02 8.73 -38.08 -0.33 -3.35 15 11 C -0.02 -0.51 6.02 -105.42 -0.63 -1.15 15 12 C -0.22 -4.37 10.37 -38.56 -0.40 -4.77 15 13 C 0.12 1.98 7.43 -16.19 -0.12 1.86 15 14 N -0.86 -10.61 9.10 31.18 0.28 -10.33 15 15 S 0.02 0.30 22.63 -107.50 -2.43 -2.14 15 16 C -0.20 -4.42 6.38 -37.49 -0.24 -4.65 15 17 C -0.14 -3.06 5.88 -104.86 -0.62 -3.68 15 18 C 0.38 7.56 11.29 34.21 0.39 7.95 15 19 O -0.48 -10.52 17.12 5.54 0.09 -10.42 15 20 C -0.12 -2.81 9.30 -38.48 -0.36 -3.17 15 21 H 0.28 6.38 8.30 -40.82 -0.34 6.04 15 22 H 0.13 3.23 6.16 -52.49 -0.32 2.91 15 23 H 0.13 2.30 8.06 -52.49 -0.42 1.88 15 24 H 0.40 3.96 8.95 -40.82 -0.37 3.60 15 25 H 0.40 4.12 8.92 -40.82 -0.36 3.76 15 26 H 0.08 1.30 7.67 -52.49 -0.40 0.90 15 27 H 0.12 2.76 7.60 -52.49 -0.40 2.36 15 LS Contribution 259.39 15.07 3.91 3.91 Total: -1.00 -27.98 259.39 -7.73 -35.71 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -1.83 Total: 8.61 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -3.34 Total: -19.30 kcal Atomic # 7 Polarization: -30.19 SS G_CDS: 0.89 Total: -29.30 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Atomic # 16 Polarization: 0.30 SS G_CDS: -2.43 Total: -2.14 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -27.98 -7.73 -35.71 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396235120.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.804 kcal (2) G-P(sol) polarization free energy of solvation -27.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds