Wall clock time and date at job start Mon Mar 30 2020 03:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86801 * 120.00061 * 2 1 4 4 H 1.48493 * 109.47511 * 269.99694 * 3 2 1 5 5 H 1.48500 * 109.47041 * 29.99851 * 3 2 1 6 6 H 1.48504 * 109.47101 * 149.99243 * 3 2 1 7 7 C 1.39840 * 120.00230 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99865 * 162.50402 * 7 2 1 9 9 C 1.41374 * 119.99865 * 342.50359 * 7 2 1 10 10 C 1.40102 * 119.94306 * 334.16873 * 9 7 2 11 11 C 1.40385 * 120.54471 * 180.27448 * 10 9 7 12 12 C 1.45595 * 128.96690 * 180.02562 * 11 10 9 13 13 C 1.32573 * 114.74382 * 179.97438 * 12 11 10 14 14 N 1.39022 * 124.28211 * 180.02562 * 13 12 11 15 15 S 1.75248 * 111.42599 * 0.02562 * 13 12 11 16 16 C 1.40190 * 119.24854 * 0.02562 * 11 10 9 17 17 C 1.41809 * 120.05009 * 359.97438 * 16 11 10 18 18 C 1.46845 * 119.85223 * 180.02562 * 17 16 11 19 19 O 1.21300 * 119.99986 * 179.97438 * 18 17 16 20 20 C 1.38758 * 120.29271 * 0.02562 * 17 16 11 21 21 H 0.97001 * 119.99675 * 0.02562 * 1 2 3 22 22 H 1.07998 * 119.72967 * 0.26871 * 10 9 7 23 23 H 1.07997 * 122.62558 * 359.97438 * 12 11 10 24 24 H 0.97002 * 119.99893 * 179.97438 * 14 13 12 25 25 H 0.96999 * 120.00343 * 359.97438 * 14 13 12 26 26 H 1.07996 * 120.00508 * 359.97438 * 18 17 16 27 27 H 1.08002 * 120.13119 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4907 2.0464 -1.4000 5 1 1.4405 2.6527 0.7000 6 1 3.5406 1.4402 0.7002 7 6 2.0083 -1.2110 0.0005 8 1 3.0508 -1.2327 -0.2806 9 6 1.3505 -2.4069 0.3692 10 6 0.2384 -2.3596 1.2200 11 6 -0.4208 -3.5398 1.5987 12 6 -1.5807 -3.7035 2.4633 13 6 -1.9745 -4.9582 2.6319 14 7 -3.0578 -5.3404 3.4149 15 16 -0.9564 -6.0736 1.7428 16 6 0.0463 -4.7703 1.1162 17 6 1.1722 -4.8143 0.2552 18 6 1.6575 -6.1056 -0.2481 19 8 2.6201 -6.1463 -0.9851 20 6 1.8174 -3.6426 -0.1138 21 1 -0.4850 0.8401 -0.0004 22 1 -0.1146 -1.4074 1.5876 23 1 -2.0811 -2.8684 2.9307 24 1 -3.2916 -6.2785 3.4945 25 1 -3.5798 -4.6692 3.8816 26 1 1.1574 -7.0191 0.0378 27 1 2.6744 -3.6791 -0.7700 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396235120.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:22 Heat of formation + Delta-G solvation = -21.372799 kcal Electronic energy + Delta-G solvation = -14733.819513 eV Core-core repulsion = 12160.580870 eV Total energy + Delta-G solvation = -2573.238643 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 247.041 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.46321 -39.22114 -37.33319 -35.57589 -33.46082 -31.85811 -28.98340 -27.30335 -25.49311 -23.55160 -22.09456 -21.16634 -19.21327 -18.65594 -17.56197 -17.28676 -16.81554 -16.33539 -16.03517 -15.33609 -15.31415 -14.78614 -14.58465 -14.36394 -13.81379 -13.33459 -13.03907 -12.84290 -12.58829 -12.40396 -12.02683 -11.80305 -11.57976 -11.16624 -10.67716 -10.36631 -10.04893 -8.78338 -8.62096 -8.15908 -6.35953 -0.09246 0.41496 0.56817 1.13642 1.24154 1.39262 1.52241 1.61624 1.97765 2.20296 2.67963 3.05854 3.41036 3.58702 4.25548 4.36045 4.70781 4.78714 4.87646 5.00961 5.19949 5.22776 5.46093 5.48994 5.74147 5.97167 6.12159 6.35214 6.47966 6.55221 6.83447 6.84305 6.92245 8.29479 Molecular weight = 247.04amu Principal moments of inertia in cm(-1) A = 0.022552 B = 0.007953 C = 0.005982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.287226 B = 3519.944542 C = 4679.839172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.037 3.963 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.264 1.264 6 H -0.259 1.259 7 C -0.495 4.495 8 H 0.079 0.921 9 C 0.072 3.928 10 C -0.149 4.149 11 C -0.031 4.031 12 C -0.268 4.268 13 C 0.143 3.857 14 N -0.835 5.835 15 S 0.095 5.905 16 C -0.224 4.224 17 C -0.141 4.141 18 C 0.395 3.605 19 O -0.502 6.502 20 C -0.147 4.147 21 H 0.290 0.710 22 H 0.108 0.892 23 H 0.132 0.868 24 H 0.413 0.587 25 H 0.413 0.587 26 H 0.133 0.867 27 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.150 -6.961 6.280 11.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.178 4.178 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.188 1.188 6 H -0.183 1.183 7 C -0.524 4.524 8 H 0.097 0.903 9 C 0.069 3.931 10 C -0.171 4.171 11 C -0.038 4.038 12 C -0.304 4.304 13 C -0.077 4.077 14 N -0.381 5.381 15 S 0.347 5.653 16 C -0.339 4.339 17 C -0.147 4.147 18 C 0.257 3.743 19 O -0.378 6.378 20 C -0.168 4.168 21 H 0.101 0.899 22 H 0.126 0.874 23 H 0.150 0.850 24 H 0.243 0.757 25 H 0.245 0.755 26 H 0.149 0.851 27 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.894 -8.359 5.748 11.733 hybrid contribution -0.038 2.575 0.216 2.585 sum -5.933 -5.784 5.964 10.209 Atomic orbital electron populations 1.69886 1.08937 1.30786 1.35159 1.26717 0.95492 1.04443 0.91150 0.85197 0.79139 0.75847 0.79536 1.18733 1.18835 1.18280 1.19798 0.98343 0.92226 1.42053 0.90317 1.17652 0.92419 0.92775 0.90251 1.21182 0.99465 0.95741 1.00723 1.19023 0.95056 0.92890 0.96793 1.20272 1.02814 0.96342 1.11003 1.21110 0.94038 0.95473 0.97078 1.41495 1.30899 1.11719 1.53960 1.82851 1.26123 1.05859 1.50443 1.22166 1.04253 0.96310 1.11199 1.19972 0.97213 0.95951 1.01575 1.24291 0.81728 0.92600 0.75646 1.90448 1.26261 1.90542 1.30585 1.21456 1.01411 0.92152 1.01772 0.89903 0.87408 0.84987 0.75670 0.75526 0.85113 0.87541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.68 11.00 21.81 0.24 -42.44 15 2 C 0.04 1.87 5.12 85.22 0.44 2.31 15 3 Si 0.98 38.00 29.59 68.60 2.03 40.03 15 4 H -0.26 -9.83 7.11 99.48 0.71 -9.12 15 5 H -0.26 -9.63 7.11 99.48 0.71 -8.93 15 6 H -0.26 -9.89 7.11 99.48 0.71 -9.18 15 7 C -0.49 -26.77 9.02 23.43 0.21 -26.56 15 8 H 0.08 4.12 7.90 -2.91 -0.02 4.10 15 9 C 0.07 3.96 5.54 -21.47 -0.12 3.84 15 10 C -0.15 -7.87 8.73 23.25 0.20 -7.67 15 11 C -0.03 -1.44 6.02 -20.38 -0.12 -1.56 15 12 C -0.27 -10.26 10.37 23.02 0.24 -10.03 15 13 C 0.14 4.37 7.43 82.40 0.61 4.98 15 14 N -0.84 -16.75 9.10 -55.25 -0.50 -17.25 15 15 S 0.10 2.92 22.63 -56.49 -1.28 1.64 15 16 C -0.22 -9.50 6.38 23.63 0.15 -9.35 15 17 C -0.14 -6.31 5.88 -20.02 -0.12 -6.43 15 18 C 0.40 14.86 11.29 70.07 0.79 15.65 15 19 O -0.50 -21.64 17.12 -3.09 -0.05 -21.69 15 20 C -0.15 -7.48 9.30 22.98 0.21 -7.27 15 21 H 0.29 13.56 8.30 -92.71 -0.77 12.79 15 22 H 0.11 5.94 6.16 -2.91 -0.02 5.92 15 23 H 0.13 4.76 8.06 -2.91 -0.02 4.74 15 24 H 0.41 5.99 8.95 -92.71 -0.83 5.16 15 25 H 0.41 6.74 8.92 -92.71 -0.83 5.92 15 26 H 0.13 3.68 7.67 -2.91 -0.02 3.66 15 27 H 0.11 5.42 7.60 -2.91 -0.02 5.40 15 Total: -1.00 -63.85 259.39 2.52 -61.33 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -0.41 Total: 20.47 kcal Atomic # 6 Polarization: -44.58 SS G_CDS: 2.50 Total: -42.08 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -0.26 Total: -59.70 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.05 Total: -21.69 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.03 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -1.28 Total: 1.64 kcal Total: -63.85 2.52 -61.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396235120.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.960 kcal (2) G-P(sol) polarization free energy of solvation -63.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds