Wall clock time and date at job start Mon Mar 30 2020 03:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30894 * 1 3 3 Si 1.86797 * 120.00296 * 2 1 4 4 H 1.48500 * 109.46889 * 239.99905 * 3 2 1 5 5 H 1.48497 * 109.46998 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47181 * 119.99858 * 3 2 1 7 7 C 1.39883 * 119.99512 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99358 * 188.94485 * 7 2 1 9 9 C 1.40682 * 120.00056 * 8.93953 * 7 2 1 10 10 C 1.39939 * 120.28357 * 35.93335 * 9 7 2 11 11 C 1.39404 * 119.93534 * 180.02562 * 10 9 7 12 12 C 1.46955 * 119.66269 * 179.97438 * 11 10 9 13 13 O 1.21282 * 120.00281 * 179.97438 * 12 11 10 14 14 C 1.39806 * 120.67605 * 359.93407 * 11 10 9 15 15 C 1.39066 * 121.34419 * 0.03138 * 14 11 10 16 16 S 1.76093 * 130.35166 * 180.25682 * 15 14 11 17 17 C 1.75486 * 91.59412 * 180.02562 * 16 15 14 18 18 C 1.33551 * 110.64370 * 359.69770 * 17 16 15 19 19 N 1.40325 * 122.16431 * 180.24982 * 18 17 16 20 20 C 1.40036 * 115.66991 * 0.22860 * 18 17 16 21 21 H 0.97004 * 120.00293 * 0.02562 * 1 2 3 22 22 H 1.07997 * 120.03175 * 0.02562 * 10 9 7 23 23 H 1.08005 * 119.99594 * 359.97407 * 12 11 10 24 24 H 1.08001 * 119.32803 * 180.02562 * 14 11 10 25 25 H 1.07993 * 124.67782 * 179.97438 * 17 16 15 26 26 H 0.96997 * 119.99868 * 18.12262 * 19 18 17 27 27 H 0.97003 * 119.99965 * 198.11488 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0968 1.6962 -1.2125 5 1 1.2781 2.7464 -0.0006 6 1 3.0967 1.6963 1.2125 7 6 2.0083 -1.2115 0.0005 8 1 3.0784 -1.2171 0.1460 9 6 1.3176 -2.4225 -0.1882 10 6 0.2244 -2.4829 -1.0597 11 6 -0.4551 -3.6866 -1.2409 12 6 -1.6027 -3.7431 -2.1572 13 8 -2.1980 -4.7872 -2.3198 14 6 -0.0555 -4.8407 -0.5606 15 6 1.0254 -4.8269 0.3143 16 16 1.7291 -6.1222 1.2775 17 6 2.9416 -5.0389 1.9377 18 6 2.7954 -3.8087 1.4391 19 7 3.6428 -2.7503 1.8009 20 6 1.7419 -3.6432 0.5315 21 1 -0.4851 0.8401 -0.0004 22 1 -0.0926 -1.5979 -1.5914 23 1 -1.9159 -2.8548 -2.6857 24 1 -0.5973 -5.7616 -0.7176 25 1 3.7039 -5.3283 2.6458 26 1 4.5024 -2.9356 2.2103 27 1 3.3690 -1.8335 1.6415 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396235189.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:46 Heat of formation + Delta-G solvation = 0.972580 kcal Electronic energy + Delta-G solvation = -15059.001593 eV Core-core repulsion = 12486.731918 eV Total energy + Delta-G solvation = -2572.269674 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 247.041 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.85920 -37.83491 -35.20257 -34.03719 -31.07569 -29.91525 -28.25446 -25.43105 -23.88455 -21.82822 -20.49147 -19.06430 -18.00053 -16.46190 -16.09153 -15.27781 -15.13591 -14.76033 -14.48425 -13.65497 -13.52121 -13.08126 -12.98843 -12.66472 -11.89828 -11.78217 -11.41508 -11.39457 -10.81858 -10.64795 -10.50627 -10.44041 -9.61436 -9.58414 -9.08329 -8.95894 -7.80161 -7.44812 -7.11893 -6.30697 -4.70454 1.32092 2.52044 2.66046 2.72381 2.87373 2.88478 3.00797 3.10244 3.64325 3.79435 4.31872 4.94743 5.06288 5.20908 5.83707 6.00135 6.19914 6.39631 6.60187 6.64177 6.77131 6.92000 6.96788 7.37328 7.43671 7.49766 7.64914 8.06960 8.16001 8.28431 8.38831 8.46294 8.68577 9.82091 Molecular weight = 247.04amu Principal moments of inertia in cm(-1) A = 0.017617 B = 0.010770 C = 0.006832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.992889 B = 2599.070437 C = 4097.377364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.917 3.083 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.454 4.454 8 H 0.092 0.908 9 C 0.151 3.849 10 C -0.124 4.124 11 C -0.141 4.141 12 C 0.388 3.612 13 O -0.485 6.485 14 C -0.155 4.155 15 C -0.076 4.076 16 S 0.013 5.987 17 C -0.366 4.366 18 C 0.253 3.747 19 N -0.877 5.877 20 C -0.178 4.178 21 H 0.289 0.711 22 H 0.128 0.872 23 H 0.093 0.907 24 H 0.107 0.893 25 H 0.142 0.858 26 H 0.383 0.617 27 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.392 1.170 0.356 3.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.147 4.147 3 Si 0.740 3.260 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.483 4.483 8 H 0.110 0.890 9 C 0.147 3.853 10 C -0.147 4.147 11 C -0.145 4.145 12 C 0.250 3.750 13 O -0.361 6.361 14 C -0.180 4.180 15 C -0.191 4.191 16 S 0.271 5.729 17 C -0.506 4.506 18 C 0.141 3.859 19 N -0.424 5.424 20 C -0.187 4.187 21 H 0.100 0.900 22 H 0.145 0.855 23 H 0.109 0.891 24 H 0.125 0.875 25 H 0.160 0.840 26 H 0.209 0.791 27 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 2.577 -0.742 0.529 2.733 hybrid contribution 1.004 2.570 0.157 2.763 sum 3.581 1.828 0.686 4.079 Atomic orbital electron populations 1.69760 1.07516 1.30322 1.33110 1.25982 0.95036 1.01520 0.92142 0.86201 0.80040 0.79473 0.80278 1.18482 1.19926 1.18691 1.19510 0.95929 0.90048 1.42806 0.88995 1.18277 0.90550 0.89552 0.86962 1.21290 0.98202 0.95227 0.99941 1.20297 0.98637 0.94901 1.00640 1.24100 0.81282 0.90859 0.78809 1.90426 1.52292 1.34833 1.58570 1.19771 0.98768 0.97651 1.01837 1.21972 0.99992 0.95617 1.01545 1.83350 1.30005 1.13303 1.46259 1.23701 1.12108 0.96818 1.17967 1.16352 0.90185 0.87813 0.91554 1.42807 1.20165 1.07371 1.72088 1.19133 1.00830 0.95557 1.03168 0.89993 0.85465 0.89064 0.87469 0.84006 0.79075 0.75824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.49 11.25 55.54 0.62 -16.87 15 2 C 0.07 1.57 5.24 -17.34 -0.09 1.48 15 3 Si 0.92 16.02 29.57 -169.99 -5.03 11.00 15 4 H -0.26 -4.55 7.11 56.52 0.40 -4.15 15 5 H -0.27 -4.76 7.11 56.52 0.40 -4.36 15 6 H -0.26 -4.52 7.11 56.52 0.40 -4.12 15 7 C -0.45 -10.24 7.50 -38.04 -0.29 -10.52 15 8 H 0.09 1.95 5.87 -52.48 -0.31 1.64 15 9 C 0.15 3.62 5.64 -104.37 -0.59 3.03 15 10 C -0.12 -2.84 8.30 -38.51 -0.32 -3.16 15 11 C -0.14 -3.09 5.84 -105.35 -0.62 -3.70 15 12 C 0.39 7.43 11.42 34.26 0.39 7.82 15 13 O -0.49 -10.38 17.09 5.56 0.09 -10.29 15 14 C -0.15 -3.54 9.56 -38.69 -0.37 -3.91 15 15 C -0.08 -1.76 6.46 -38.59 -0.25 -2.01 15 16 S 0.01 0.27 23.29 -107.50 -2.50 -2.23 15 17 C -0.37 -7.35 11.05 29.09 0.32 -7.03 15 18 C 0.25 5.42 6.73 -84.93 -0.57 4.85 15 19 N -0.88 -16.00 8.70 31.78 0.28 -15.72 15 20 C -0.18 -4.21 6.03 -104.57 -0.63 -4.84 15 21 H 0.29 5.88 8.30 -40.82 -0.34 5.54 15 22 H 0.13 2.82 6.70 -52.49 -0.35 2.47 15 23 H 0.09 1.41 8.06 -52.48 -0.42 0.99 15 24 H 0.11 2.39 7.56 -52.49 -0.40 1.99 15 25 H 0.14 2.49 8.06 -52.49 -0.42 2.07 15 26 H 0.38 5.70 8.92 -40.82 -0.36 5.33 15 27 H 0.41 7.60 5.47 -40.82 -0.22 7.37 15 LS Contribution 253.90 15.07 3.83 3.83 Total: -1.00 -26.15 253.90 -7.34 -33.49 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -1.62 Total: 14.78 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -3.01 Total: -17.98 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: 0.90 Total: -32.59 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 16.02 SS G_CDS: -5.03 Total: 11.00 kcal Atomic # 16 Polarization: 0.27 SS G_CDS: -2.50 Total: -2.23 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -26.15 -7.34 -33.49 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396235189.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.461 kcal (2) G-P(sol) polarization free energy of solvation -26.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds