Wall clock time and date at job start Mon Mar 30 2020 03:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86803 * 119.99709 * 2 1 4 4 H 1.48502 * 109.46883 * 239.99680 * 3 2 1 5 5 H 1.48493 * 109.47343 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47045 * 120.00055 * 3 2 1 7 7 C 1.40073 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99920 * 197.97519 * 7 2 1 9 9 C 1.40903 * 120.00193 * 17.98285 * 7 2 1 10 10 C 1.40459 * 120.12655 * 24.84071 * 9 7 2 11 11 C 1.39042 * 120.18587 * 180.02562 * 10 9 7 12 12 S 1.76055 * 130.15400 * 179.97438 * 11 10 9 13 13 C 1.75472 * 91.64605 * 179.97438 * 12 11 10 14 14 C 1.41668 * 124.77958 * 180.02562 * 13 12 11 15 15 O 1.21410 * 119.99793 * 359.96256 * 14 13 12 16 16 C 1.35791 * 110.44398 * 359.97438 * 13 12 11 17 17 C 1.39400 * 115.40748 * 0.02562 * 16 13 12 18 18 C 1.42967 * 128.32826 * 180.02562 * 17 16 13 19 19 N 1.39178 * 119.64594 * 0.02562 * 18 17 16 20 20 C 1.35848 * 120.71162 * 180.02562 * 18 17 16 21 21 H 0.97002 * 119.99649 * 0.02562 * 1 2 3 22 22 H 1.08005 * 119.91028 * 359.97438 * 10 9 7 23 23 H 1.07998 * 120.00234 * 179.97438 * 14 13 12 24 24 H 1.07999 * 122.29926 * 180.02562 * 16 13 12 25 25 H 0.97002 * 119.99871 * 180.02562 * 19 18 17 26 26 H 0.97000 * 120.00308 * 0.02562 * 19 18 17 27 27 H 1.08003 * 119.83167 * 179.70384 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2764 2.7465 -0.0006 6 1 3.0952 1.6965 1.2125 7 6 2.0078 -1.2131 0.0005 8 1 3.0483 -1.2358 0.2892 9 6 1.3549 -2.4037 -0.3756 10 6 0.2333 -2.3563 -1.2198 11 6 -0.4122 -3.5304 -1.5914 12 16 -1.8194 -3.7754 -2.6206 13 6 -1.7418 -5.5144 -2.3988 14 6 -2.6377 -6.4441 -2.9819 15 8 -3.5403 -6.0531 -3.6935 16 6 -0.7015 -5.8435 -1.5905 17 6 0.0566 -4.7705 -1.1245 18 6 1.2006 -4.7990 -0.2675 19 7 1.6784 -6.0188 0.2025 20 6 1.8263 -3.6484 0.0930 21 1 -0.4850 0.8401 -0.0004 22 1 -0.1293 -1.4050 -1.5806 23 1 -2.5178 -7.5007 -2.7932 24 1 -0.4768 -6.8664 -1.3268 25 1 2.4540 -6.0441 0.7845 26 1 1.2359 -6.8436 -0.0520 27 1 2.6865 -3.6861 0.7450 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396235588.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:03 Heat of formation + Delta-G solvation = -26.332624 kcal Electronic energy + Delta-G solvation = -14704.297056 eV Core-core repulsion = 12130.843339 eV Total energy + Delta-G solvation = -2573.453717 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 247.041 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.36565 -39.59977 -36.82604 -35.75660 -34.19537 -31.17515 -29.15467 -28.00419 -24.77560 -23.92528 -22.04077 -21.09078 -19.53796 -18.21592 -17.69089 -17.20370 -16.84060 -16.11347 -15.71280 -15.48270 -15.30793 -14.75412 -14.51592 -14.28256 -13.78411 -13.33553 -12.94892 -12.82180 -12.40331 -12.24981 -11.97896 -11.88197 -11.40082 -11.31489 -10.75190 -10.69964 -9.50712 -9.23530 -8.84458 -7.85900 -6.46130 -0.36708 0.97311 1.01109 1.19454 1.39225 1.50498 1.52301 1.56874 2.12401 2.21295 2.68145 3.20837 3.58963 3.80005 4.28388 4.33413 4.77496 4.88409 4.91928 4.99674 5.14206 5.25231 5.37976 5.63489 5.78832 5.85874 6.04294 6.38021 6.62991 6.70719 6.73817 6.90861 7.20458 8.08576 Molecular weight = 247.04amu Principal moments of inertia in cm(-1) A = 0.029611 B = 0.007011 C = 0.005761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.352092 B = 3993.019258 C = 4858.732361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.033 3.967 3 Si 0.989 3.011 4 H -0.257 1.257 5 H -0.270 1.270 6 H -0.249 1.249 7 C -0.446 4.446 8 H 0.101 0.899 9 C 0.144 3.856 10 C -0.223 4.223 11 C -0.054 4.054 12 S 0.001 5.999 13 C -0.394 4.394 14 C 0.413 3.587 15 O -0.545 6.545 16 C 0.044 3.956 17 C -0.286 4.286 18 C 0.299 3.701 19 N -0.856 5.856 20 C -0.312 4.312 21 H 0.297 0.703 22 H 0.098 0.902 23 H 0.154 0.846 24 H 0.177 0.823 25 H 0.407 0.593 26 H 0.404 0.596 27 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.830 -7.168 2.217 8.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.188 4.188 3 Si 0.809 3.191 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.172 1.172 7 C -0.473 4.473 8 H 0.119 0.881 9 C 0.136 3.864 10 C -0.252 4.252 11 C -0.170 4.170 12 S 0.262 5.738 13 C -0.509 4.509 14 C 0.281 3.719 15 O -0.427 6.427 16 C 0.014 3.986 17 C -0.292 4.292 18 C 0.189 3.811 19 N -0.396 5.396 20 C -0.338 4.338 21 H 0.108 0.892 22 H 0.116 0.884 23 H 0.170 0.830 24 H 0.194 0.806 25 H 0.238 0.762 26 H 0.234 0.766 27 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.094 -6.028 1.020 6.852 hybrid contribution 1.097 -0.016 0.910 1.425 sum 4.191 -6.043 1.930 7.603 Atomic orbital electron populations 1.69871 1.09684 1.31891 1.29836 1.27082 0.95422 1.05433 0.90866 0.85120 0.78785 0.74547 0.80697 1.18149 1.19424 1.17225 1.20192 0.99141 0.91787 1.36219 0.88095 1.17576 0.89306 0.93233 0.86241 1.20475 1.02860 0.94455 1.07431 1.22706 0.97503 0.97642 0.99159 1.84012 1.30854 1.04432 1.54490 1.23577 1.11012 0.96679 1.19612 1.22329 0.79272 0.95118 0.75219 1.90508 1.33079 1.84457 1.34676 1.20623 0.89132 0.99619 0.89222 1.17654 1.04730 0.92443 1.14380 1.17105 0.88821 0.87021 0.88137 1.42241 1.36174 1.04549 1.56642 1.20144 1.08467 0.91328 1.13906 0.89184 0.88402 0.82987 0.80602 0.76242 0.76608 0.86257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.84 10.97 21.85 0.24 -38.60 15 2 C 0.03 1.48 5.12 85.30 0.44 1.92 15 3 Si 0.99 33.97 29.60 68.60 2.03 36.00 15 4 H -0.26 -8.72 7.11 99.48 0.71 -8.01 15 5 H -0.27 -8.99 7.11 99.48 0.71 -8.28 15 6 H -0.25 -8.00 7.11 99.48 0.71 -7.30 15 7 C -0.45 -21.31 9.03 23.37 0.21 -21.10 15 8 H 0.10 4.41 7.91 -2.91 -0.02 4.38 15 9 C 0.14 7.17 5.56 -21.38 -0.12 7.06 15 10 C -0.22 -11.69 8.72 23.00 0.20 -11.49 15 11 C -0.05 -2.62 6.45 23.03 0.15 -2.47 15 12 S 0.00 0.03 22.93 -56.49 -1.30 -1.26 15 13 C -0.39 -14.93 6.18 22.55 0.14 -14.79 15 14 C 0.41 13.53 11.35 68.67 0.78 14.31 15 15 O -0.54 -22.64 17.61 -3.43 -0.06 -22.70 15 16 C 0.04 1.50 9.66 21.98 0.21 1.71 15 17 C -0.29 -11.83 5.88 -21.25 -0.12 -11.95 15 18 C 0.30 11.30 6.76 38.61 0.26 11.56 15 19 N -0.86 -21.57 9.05 -50.90 -0.46 -22.03 15 20 C -0.31 -13.38 9.47 22.42 0.21 -13.17 15 21 H 0.30 13.20 8.29 -92.71 -0.77 12.43 15 22 H 0.10 5.48 6.15 -2.91 -0.02 5.46 15 23 H 0.15 3.07 8.06 -2.91 -0.02 3.05 15 24 H 0.18 3.85 7.31 -2.91 -0.02 3.83 15 25 H 0.41 8.37 8.81 -92.71 -0.82 7.56 15 26 H 0.40 7.79 7.75 -92.71 -0.72 7.07 15 27 H 0.12 4.56 8.06 -2.91 -0.02 4.54 15 Total: -1.00 -64.81 257.99 2.52 -62.29 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: -0.29 Total: 24.72 kcal Atomic # 6 Polarization: -40.78 SS G_CDS: 2.36 Total: -38.42 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -0.22 Total: -60.64 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.06 Total: -22.70 kcal Atomic # 14 Polarization: 33.97 SS G_CDS: 2.03 Total: 36.00 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -1.30 Total: -1.26 kcal Total: -64.81 2.52 -62.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396235588.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.957 kcal (2) G-P(sol) polarization free energy of solvation -64.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds