Wall clock time and date at job start Mon Mar 30 2020 03:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30911 * 1 3 3 Si 1.86803 * 119.99785 * 2 1 4 4 H 1.48508 * 109.47148 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47380 * 300.00136 * 3 2 1 6 6 H 1.48496 * 109.47322 * 60.00744 * 3 2 1 7 7 C 1.39814 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99867 * 198.04863 * 7 2 1 9 9 C 1.41349 * 120.00150 * 18.04334 * 7 2 1 10 10 C 1.40139 * 119.94540 * 204.81675 * 9 7 2 11 11 C 1.40273 * 120.55947 * 179.97438 * 10 9 7 12 12 C 1.46008 * 129.03596 * 180.33138 * 11 10 9 13 13 N 1.40468 * 122.62174 * 0.02853 * 12 11 10 14 14 C 1.32054 * 114.75743 * 180.19904 * 12 11 10 15 15 S 1.75240 * 111.51160 * 359.54076 * 14 12 11 16 16 C 1.40108 * 119.26147 * 0.04968 * 11 10 9 17 17 C 1.41991 * 120.04527 * 359.97438 * 16 11 10 18 18 C 1.46825 * 119.86246 * 179.97438 * 17 16 11 19 19 O 1.21297 * 119.99675 * 179.97438 * 18 17 16 20 20 C 1.38652 * 120.26760 * 359.97438 * 17 16 11 21 21 H 0.97002 * 120.00531 * 359.97438 * 1 2 3 22 22 H 1.08003 * 119.72081 * 0.02562 * 10 9 7 23 23 H 0.97009 * 119.99996 * 180.21268 * 13 12 11 24 24 H 0.96995 * 120.00338 * 0.20954 * 13 12 11 25 25 H 1.08000 * 124.24588 * 179.81268 * 14 12 11 26 26 H 1.07998 * 119.99775 * 0.02562 * 18 17 16 27 27 H 1.08002 * 120.12085 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 3.7032 1.3465 -0.0006 5 1 1.8843 2.3966 -1.2125 6 1 1.8845 2.3964 1.2125 7 6 2.0082 -1.2108 -0.0005 8 1 3.0484 -1.2339 0.2892 9 6 1.3537 -2.4047 -0.3802 10 6 1.8241 -3.6394 0.0869 11 6 1.1841 -4.8320 -0.2813 12 6 1.5083 -6.2044 0.0973 13 7 2.5840 -6.5227 0.9427 14 6 0.7133 -7.1232 -0.4200 15 16 -0.5326 -6.4050 -1.4214 16 6 0.0665 -4.7774 -1.1245 17 6 -0.4074 -3.5249 -1.5966 18 6 -1.5786 -3.4724 -2.4805 19 8 -1.9858 -2.4038 -2.8848 20 6 0.2313 -2.3514 -1.2262 21 1 -0.4851 0.8400 0.0004 22 1 2.6863 -3.6728 0.7366 23 1 2.7669 -7.4486 1.1672 24 1 3.1438 -5.8169 1.3020 25 1 0.8153 -8.1839 -0.2442 26 1 -2.0779 -4.3852 -2.7700 27 1 -0.1314 -1.4000 -1.5862 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396239297.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:15 Heat of formation + Delta-G solvation = -20.929728 kcal Electronic energy + Delta-G solvation = -14891.091512 eV Core-core repulsion = 12317.872082 eV Total energy + Delta-G solvation = -2573.219430 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 247.041 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.55445 -39.38170 -37.34166 -35.30583 -32.59649 -31.96399 -29.74351 -27.39463 -25.43081 -23.84169 -22.03141 -20.71297 -19.46938 -18.33309 -17.43837 -17.13847 -16.96362 -16.37084 -15.94782 -15.42295 -15.33197 -14.77067 -14.63756 -14.33583 -13.75192 -13.23496 -13.05853 -12.77112 -12.55125 -12.29398 -12.07495 -11.87145 -11.58663 -11.23805 -10.66259 -10.60003 -9.71005 -9.19667 -8.76716 -7.91927 -6.36108 -0.12207 0.34201 1.02559 1.22393 1.38437 1.45402 1.53729 1.61240 2.00935 2.16762 2.63322 3.19906 3.44126 3.51109 3.93400 4.27327 4.53177 4.76302 4.83773 4.97060 5.07241 5.19768 5.34525 5.48307 5.57189 5.84723 6.03808 6.40569 6.49899 6.58966 6.76042 6.78889 7.14060 8.22810 Molecular weight = 247.04amu Principal moments of inertia in cm(-1) A = 0.024797 B = 0.008176 C = 0.006263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.899436 B = 3423.758448 C = 4469.397705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.032 3.968 3 Si 0.985 3.015 4 H -0.251 1.251 5 H -0.269 1.269 6 H -0.265 1.265 7 C -0.485 4.485 8 H 0.089 0.911 9 C 0.064 3.936 10 C -0.182 4.182 11 C -0.079 4.079 12 C 0.198 3.802 13 N -0.859 5.859 14 C -0.316 4.316 15 S 0.065 5.935 16 C -0.188 4.188 17 C -0.171 4.171 18 C 0.391 3.609 19 O -0.504 6.504 20 C -0.072 4.072 21 H 0.291 0.709 22 H 0.113 0.887 23 H 0.410 0.590 24 H 0.400 0.600 25 H 0.180 0.820 26 H 0.131 0.869 27 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.887 -9.042 0.631 9.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.183 4.183 3 Si 0.805 3.195 4 H -0.174 1.174 5 H -0.194 1.194 6 H -0.190 1.190 7 C -0.514 4.514 8 H 0.107 0.893 9 C 0.061 3.939 10 C -0.204 4.204 11 C -0.088 4.088 12 C 0.084 3.916 13 N -0.404 5.404 14 C -0.457 4.457 15 S 0.321 5.679 16 C -0.304 4.304 17 C -0.177 4.177 18 C 0.254 3.746 19 O -0.380 6.380 20 C -0.093 4.093 21 H 0.102 0.898 22 H 0.131 0.869 23 H 0.241 0.759 24 H 0.229 0.771 25 H 0.198 0.802 26 H 0.147 0.853 27 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.288 -8.969 -0.386 9.069 hybrid contribution 1.659 1.336 1.211 2.451 sum 2.947 -7.632 0.825 8.223 Atomic orbital electron populations 1.69869 1.09219 1.31063 1.34917 1.26832 0.95406 1.04965 0.91097 0.85104 0.79648 0.75881 0.78838 1.17429 1.19391 1.18967 1.19834 0.98808 0.91736 1.41055 0.89324 1.17707 0.92057 0.93530 0.90655 1.20965 1.03692 0.90425 1.05323 1.18936 0.97041 0.92585 1.00202 1.17467 0.90787 0.89993 0.93334 1.42061 1.32439 1.11163 1.54695 1.23877 1.05204 1.02734 1.13899 1.82930 1.35051 0.94047 1.55904 1.22318 1.02719 0.96750 1.08582 1.20158 1.00948 0.92017 1.04571 1.24289 0.81919 0.92831 0.75583 1.90458 1.62973 1.36108 1.48504 1.21792 0.95947 0.96442 0.95133 0.89847 0.86891 0.75900 0.77123 0.80239 0.85278 0.86591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.31 10.97 21.81 0.24 -43.07 15 2 C 0.03 1.60 5.12 85.21 0.44 2.03 15 3 Si 0.98 37.31 29.60 68.60 2.03 39.34 15 4 H -0.25 -9.08 7.11 99.48 0.71 -8.37 15 5 H -0.27 -10.07 7.11 99.48 0.71 -9.36 15 6 H -0.26 -9.61 7.11 99.48 0.71 -8.91 15 7 C -0.48 -24.88 9.02 23.42 0.21 -24.67 15 8 H 0.09 4.28 7.91 -2.91 -0.02 4.25 15 9 C 0.06 3.35 5.55 -21.46 -0.12 3.23 15 10 C -0.18 -8.39 9.63 23.23 0.22 -8.16 15 11 C -0.08 -3.36 6.03 -20.32 -0.12 -3.48 15 12 C 0.20 6.71 6.94 38.83 0.27 6.98 15 13 N -0.86 -21.99 9.16 -50.09 -0.46 -22.45 15 14 C -0.32 -9.67 10.91 66.88 0.73 -8.94 15 15 S 0.07 2.13 22.64 -56.49 -1.28 0.85 15 16 C -0.19 -7.98 6.39 23.65 0.15 -7.83 15 17 C -0.17 -7.96 5.89 -20.00 -0.12 -8.08 15 18 C 0.39 16.16 11.29 70.07 0.79 16.95 15 19 O -0.50 -24.02 17.11 -3.08 -0.05 -24.07 15 20 C -0.07 -3.82 8.19 22.96 0.19 -3.63 15 21 H 0.29 13.95 8.30 -92.71 -0.77 13.18 15 22 H 0.11 4.71 7.59 -2.91 -0.02 4.69 15 23 H 0.41 7.68 8.89 -92.70 -0.82 6.86 15 24 H 0.40 9.88 8.31 -92.71 -0.77 9.11 15 25 H 0.18 4.24 8.06 -2.91 -0.02 4.22 15 26 H 0.13 4.12 7.67 -2.91 -0.02 4.10 15 27 H 0.12 6.64 5.70 -2.91 -0.02 6.63 15 Total: -1.00 -61.39 258.19 2.77 -58.62 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: -0.35 Total: 26.40 kcal Atomic # 6 Polarization: -38.26 SS G_CDS: 2.64 Total: -35.62 kcal Atomic # 7 Polarization: -65.30 SS G_CDS: -0.22 Total: -65.52 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.05 Total: -24.07 kcal Atomic # 14 Polarization: 37.31 SS G_CDS: 2.03 Total: 39.34 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -1.28 Total: 0.85 kcal Total: -61.39 2.77 -58.62 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396239297.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.690 kcal (2) G-P(sol) polarization free energy of solvation -61.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds