Wall clock time and date at job start Mon Mar 30 2020 03:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30964 * 1 3 3 Si 1.86801 * 119.99807 * 2 1 4 4 H 1.48496 * 109.47309 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46915 * 299.99771 * 3 2 1 6 6 H 1.48504 * 109.47203 * 59.99646 * 3 2 1 7 7 C 1.39816 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00226 * 195.52616 * 7 2 1 9 9 C 1.40919 * 119.99772 * 15.53681 * 7 2 1 10 10 C 1.40423 * 119.86428 * 26.48833 * 9 7 2 11 11 C 1.38472 * 120.09390 * 180.02562 * 10 9 7 12 12 C 1.46346 * 120.04079 * 180.20932 * 11 10 9 13 13 O 1.21375 * 119.99930 * 359.72198 * 12 11 10 14 14 C 1.47989 * 119.91919 * 359.93017 * 11 10 9 15 15 C 1.39925 * 128.77605 * 180.02562 * 14 11 10 16 16 C 1.32782 * 115.87613 * 179.97438 * 15 14 11 17 17 S 1.75503 * 110.62306 * 0.02562 * 16 15 14 18 18 C 1.39647 * 118.57743 * 0.02562 * 14 11 10 19 19 C 1.39924 * 120.25512 * 0.02562 * 18 14 11 20 20 N 1.38119 * 119.55933 * 180.02562 * 19 18 14 21 21 H 0.96999 * 120.00504 * 0.02562 * 1 2 3 22 22 H 1.08001 * 119.94976 * 359.97438 * 10 9 7 23 23 H 1.08005 * 120.00162 * 179.71957 * 12 11 10 24 24 H 1.08002 * 122.06166 * 359.97438 * 15 14 11 25 25 H 1.07995 * 124.68434 * 180.02562 * 16 15 14 26 26 H 0.96997 * 120.00334 * 0.02562 * 20 19 18 27 27 H 0.97001 * 120.00059 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3096 0.0000 0.0000 3 14 2.2436 1.6178 0.0000 4 1 3.7036 1.3465 0.0006 5 1 1.8848 2.3964 -1.2125 6 1 1.8848 2.3965 1.2125 7 6 2.0088 -1.2108 0.0005 8 1 3.0592 -1.2278 0.2509 9 6 1.3428 -2.4091 -0.3258 10 6 0.2117 -2.3762 -1.1573 11 6 -0.4467 -3.5508 -1.4806 12 6 -1.6227 -3.5157 -2.3510 13 8 -2.0245 -2.4562 -2.7858 14 6 0.0440 -4.8421 -0.9500 15 6 -0.4717 -6.1266 -1.1551 16 6 0.1769 -7.1149 -0.5503 17 16 1.5404 -6.4920 0.3624 18 6 1.1719 -4.8407 -0.1266 19 6 1.8164 -3.6383 0.1842 20 7 2.9311 -3.6536 0.9996 21 1 -0.4851 0.8400 -0.0004 22 1 -0.1457 -1.4335 -1.5445 23 1 -2.1330 -4.4327 -2.6064 24 1 -1.3435 -6.3033 -1.7676 25 1 -0.0969 -8.1578 -0.6116 26 1 3.2625 -4.4942 1.3523 27 1 3.3827 -2.8237 1.2194 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396239344.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:55 Heat of formation + Delta-G solvation = 2.088769 kcal Electronic energy + Delta-G solvation = -15076.503044 eV Core-core repulsion = 12504.281771 eV Total energy + Delta-G solvation = -2572.221273 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 247.041 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.78868 -37.45361 -35.55130 -33.76465 -32.14174 -29.02409 -28.22672 -25.46235 -23.05685 -22.54822 -19.89188 -19.75370 -17.67828 -16.60984 -16.09857 -15.27200 -15.21815 -14.84667 -13.96122 -13.77662 -13.41577 -13.32948 -12.62002 -12.49939 -12.30322 -11.60164 -11.41837 -11.18193 -10.95817 -10.75226 -10.50689 -10.26555 -9.82912 -9.45125 -9.12363 -8.80283 -7.94010 -7.46407 -6.98730 -6.39204 -4.29752 1.35193 2.31236 2.47177 2.86240 2.87806 3.00118 3.03856 3.26890 3.59954 3.80152 4.48370 4.96559 5.20579 5.36061 5.57961 5.97799 6.11226 6.27405 6.51789 6.63381 6.81430 6.87835 7.01069 7.28436 7.45575 7.55097 7.74455 8.12311 8.35184 8.43812 8.51497 8.71865 8.80352 10.00681 Molecular weight = 247.04amu Principal moments of inertia in cm(-1) A = 0.024263 B = 0.008909 C = 0.006642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.760798 B = 3142.003468 C = 4214.632691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.070 3.930 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.443 4.443 8 H 0.081 0.919 9 C 0.055 3.945 10 C -0.030 4.030 11 C -0.197 4.197 12 C 0.384 3.616 13 O -0.487 6.487 14 C -0.120 4.120 15 C -0.087 4.087 16 C -0.246 4.246 17 S 0.005 5.995 18 C -0.152 4.152 19 C 0.156 3.844 20 N -0.871 5.871 21 H 0.286 0.714 22 H 0.142 0.858 23 H 0.078 0.922 24 H 0.125 0.875 25 H 0.149 0.851 26 H 0.380 0.620 27 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.252 -5.947 0.452 6.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.149 4.149 3 Si 0.738 3.262 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.473 4.473 8 H 0.099 0.901 9 C 0.047 3.953 10 C -0.051 4.051 11 C -0.202 4.202 12 C 0.247 3.753 13 O -0.364 6.364 14 C -0.127 4.127 15 C -0.118 4.118 16 C -0.380 4.380 17 S 0.265 5.735 18 C -0.271 4.271 19 C 0.047 3.953 20 N -0.412 5.412 21 H 0.097 0.903 22 H 0.160 0.840 23 H 0.094 0.906 24 H 0.142 0.858 25 H 0.166 0.834 26 H 0.206 0.794 27 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 2.836 -5.979 1.072 6.704 hybrid contribution -0.449 1.098 -0.451 1.269 sum 2.387 -4.881 0.621 5.468 Atomic orbital electron populations 1.69805 1.07466 1.29914 1.33800 1.25909 0.94876 1.01543 0.92610 0.86149 0.80626 0.80587 0.78800 1.18381 1.19491 1.19876 1.19258 0.97022 0.90558 1.40510 0.90055 1.17008 0.94197 0.90330 0.93804 1.21577 0.93839 0.96677 0.93055 1.21098 1.00868 0.92121 1.06144 1.23519 0.83235 0.91638 0.76878 1.90481 1.63691 1.35334 1.46890 1.18411 0.97664 0.92045 1.04578 1.19692 1.00161 0.91448 1.00496 1.24632 1.02752 1.01817 1.08762 1.83384 1.33462 0.99874 1.56807 1.21637 1.02907 0.94187 1.08379 1.17099 0.91249 0.91237 0.95716 1.41856 1.32197 1.10243 1.56910 0.90255 0.84023 0.90624 0.85757 0.83374 0.79421 0.77324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.53 10.92 55.54 0.61 -18.92 15 2 C 0.07 1.63 5.15 -17.33 -0.09 1.54 15 3 Si 0.91 17.60 29.59 -169.99 -5.03 12.57 15 4 H -0.26 -4.89 7.11 56.52 0.40 -4.49 15 5 H -0.27 -5.23 7.11 56.52 0.40 -4.83 15 6 H -0.27 -5.22 7.11 56.52 0.40 -4.82 15 7 C -0.44 -10.60 8.42 -37.98 -0.32 -10.92 15 8 H 0.08 1.81 6.61 -52.49 -0.35 1.46 15 9 C 0.06 1.37 5.56 -106.91 -0.59 0.77 15 10 C -0.03 -0.77 8.14 -38.67 -0.31 -1.08 15 11 C -0.20 -4.49 6.06 -102.56 -0.62 -5.11 15 12 C 0.38 7.89 11.27 33.99 0.38 8.27 15 13 O -0.49 -11.47 17.11 5.47 0.09 -11.37 15 14 C -0.12 -2.58 6.02 -104.74 -0.63 -3.21 15 15 C -0.09 -1.58 9.75 -40.82 -0.40 -1.98 15 16 C -0.25 -4.14 11.12 28.86 0.32 -3.82 15 17 S 0.00 0.09 22.67 -107.50 -2.44 -2.35 15 18 C -0.15 -3.31 6.39 -38.42 -0.25 -3.56 15 19 C 0.16 3.53 6.78 -83.25 -0.56 2.97 15 20 N -0.87 -16.51 8.93 32.77 0.29 -16.22 15 21 H 0.29 6.55 8.30 -40.82 -0.34 6.21 15 22 H 0.14 3.81 5.69 -52.49 -0.30 3.51 15 23 H 0.08 1.23 7.29 -52.48 -0.38 0.85 15 24 H 0.12 1.86 7.39 -52.49 -0.39 1.47 15 25 H 0.15 2.02 8.06 -52.49 -0.42 1.60 15 26 H 0.38 6.34 8.23 -40.82 -0.34 6.00 15 27 H 0.40 7.14 6.91 -40.82 -0.28 6.86 15 LS Contribution 253.66 15.07 3.82 3.82 Total: -1.00 -27.45 253.66 -7.32 -34.77 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -1.59 Total: 13.82 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -3.07 Total: -16.13 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.90 Total: -35.14 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.03 Total: 12.57 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -2.44 Total: -2.35 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -27.45 -7.32 -34.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396239344.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.859 kcal (2) G-P(sol) polarization free energy of solvation -27.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds