Wall clock time and date at job start Mon Mar 30 2020 03:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30964 * 1 3 3 Si 1.86801 * 119.99807 * 2 1 4 4 H 1.48496 * 109.47309 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46915 * 299.99771 * 3 2 1 6 6 H 1.48504 * 109.47203 * 59.99646 * 3 2 1 7 7 C 1.39816 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00226 * 195.52616 * 7 2 1 9 9 C 1.40919 * 119.99772 * 15.53681 * 7 2 1 10 10 C 1.40423 * 119.86428 * 26.48833 * 9 7 2 11 11 C 1.38472 * 120.09390 * 180.02562 * 10 9 7 12 12 C 1.46346 * 120.04079 * 180.20932 * 11 10 9 13 13 O 1.21375 * 119.99930 * 359.72198 * 12 11 10 14 14 C 1.47989 * 119.91919 * 359.93017 * 11 10 9 15 15 C 1.39925 * 128.77605 * 180.02562 * 14 11 10 16 16 C 1.32782 * 115.87613 * 179.97438 * 15 14 11 17 17 S 1.75503 * 110.62306 * 0.02562 * 16 15 14 18 18 C 1.39647 * 118.57743 * 0.02562 * 14 11 10 19 19 C 1.39924 * 120.25512 * 0.02562 * 18 14 11 20 20 N 1.38119 * 119.55933 * 180.02562 * 19 18 14 21 21 H 0.96999 * 120.00504 * 0.02562 * 1 2 3 22 22 H 1.08001 * 119.94976 * 359.97438 * 10 9 7 23 23 H 1.08005 * 120.00162 * 179.71957 * 12 11 10 24 24 H 1.08002 * 122.06166 * 359.97438 * 15 14 11 25 25 H 1.07995 * 124.68434 * 180.02562 * 16 15 14 26 26 H 0.96997 * 120.00334 * 0.02562 * 20 19 18 27 27 H 0.97001 * 120.00059 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3096 0.0000 0.0000 3 14 2.2436 1.6178 0.0000 4 1 3.7036 1.3465 0.0006 5 1 1.8848 2.3964 -1.2125 6 1 1.8848 2.3965 1.2125 7 6 2.0088 -1.2108 0.0005 8 1 3.0592 -1.2278 0.2509 9 6 1.3428 -2.4091 -0.3258 10 6 0.2117 -2.3762 -1.1573 11 6 -0.4467 -3.5508 -1.4806 12 6 -1.6227 -3.5157 -2.3510 13 8 -2.0245 -2.4562 -2.7858 14 6 0.0440 -4.8421 -0.9500 15 6 -0.4717 -6.1266 -1.1551 16 6 0.1769 -7.1149 -0.5503 17 16 1.5404 -6.4920 0.3624 18 6 1.1719 -4.8407 -0.1266 19 6 1.8164 -3.6383 0.1842 20 7 2.9311 -3.6536 0.9996 21 1 -0.4851 0.8400 -0.0004 22 1 -0.1457 -1.4335 -1.5445 23 1 -2.1330 -4.4327 -2.6064 24 1 -1.3435 -6.3033 -1.7676 25 1 -0.0969 -8.1578 -0.6116 26 1 3.2625 -4.4942 1.3523 27 1 3.3827 -2.8237 1.2194 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396239344.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:54 Heat of formation + Delta-G solvation = -15.006813 kcal Electronic energy + Delta-G solvation = -15077.244364 eV Core-core repulsion = 12504.281771 eV Total energy + Delta-G solvation = -2572.962593 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 247.041 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.45413 -39.14066 -37.13922 -35.43802 -33.79686 -30.69045 -29.86401 -27.14782 -24.72182 -24.15369 -21.54155 -21.31654 -19.34572 -18.21240 -17.73594 -16.94072 -16.80926 -16.44143 -15.58371 -15.24703 -15.12484 -14.96256 -14.29029 -14.16766 -13.89585 -13.22003 -12.98875 -12.70341 -12.53491 -12.36099 -12.11731 -11.85512 -11.40192 -11.13616 -10.81855 -10.45108 -9.44384 -9.12417 -8.66768 -8.01708 -6.05900 -0.23523 0.60850 0.93672 1.34098 1.35699 1.40691 1.53970 1.70062 1.95160 2.20922 2.79676 3.37940 3.60134 3.70491 4.17194 4.48898 4.54863 4.80420 4.94662 4.95666 5.17000 5.25241 5.36790 5.71927 5.77281 5.84742 6.01968 6.37830 6.70175 6.80006 6.84323 7.02167 7.26051 8.35770 Molecular weight = 247.04amu Principal moments of inertia in cm(-1) A = 0.024263 B = 0.008909 C = 0.006642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.760798 B = 3142.003468 C = 4214.632691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.028 3.972 3 Si 0.982 3.018 4 H -0.251 1.251 5 H -0.275 1.275 6 H -0.270 1.270 7 C -0.476 4.476 8 H 0.088 0.912 9 C 0.013 3.987 10 C -0.057 4.057 11 C -0.226 4.226 12 C 0.390 3.610 13 O -0.527 6.527 14 C -0.101 4.101 15 C -0.113 4.113 16 C -0.210 4.210 17 S 0.047 5.953 18 C -0.199 4.199 19 C 0.165 3.835 20 N -0.857 5.857 21 H 0.285 0.715 22 H 0.111 0.889 23 H 0.137 0.863 24 H 0.163 0.837 25 H 0.195 0.805 26 H 0.393 0.607 27 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.592 -9.399 0.677 9.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.185 4.185 3 Si 0.803 3.197 4 H -0.174 1.174 5 H -0.200 1.200 6 H -0.195 1.195 7 C -0.507 4.507 8 H 0.106 0.894 9 C 0.005 3.995 10 C -0.079 4.079 11 C -0.232 4.232 12 C 0.256 3.744 13 O -0.406 6.406 14 C -0.109 4.109 15 C -0.143 4.143 16 C -0.344 4.344 17 S 0.307 5.693 18 C -0.318 4.318 19 C 0.054 3.946 20 N -0.398 5.398 21 H 0.095 0.905 22 H 0.129 0.871 23 H 0.153 0.847 24 H 0.180 0.820 25 H 0.212 0.788 26 H 0.221 0.779 27 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 3.228 -9.463 1.329 10.087 hybrid contribution -0.533 1.656 -0.482 1.805 sum 2.695 -7.808 0.847 8.303 Atomic orbital electron populations 1.69909 1.09020 1.30302 1.36965 1.26693 0.95386 1.04535 0.91916 0.85144 0.79636 0.76486 0.78386 1.17376 1.19987 1.19481 1.19425 0.97375 0.91201 1.42742 0.89446 1.17256 0.95260 0.91649 0.95365 1.21432 0.95328 0.96611 0.94505 1.21431 1.02106 0.92177 1.07442 1.24123 0.82219 0.92765 0.75310 1.90472 1.64502 1.37346 1.48299 1.18892 0.96751 0.93000 1.02292 1.19967 1.02222 0.89704 1.02447 1.25355 1.00259 1.03769 1.04987 1.83306 1.33613 0.96336 1.56053 1.22086 1.03694 0.96337 1.09667 1.17290 0.91283 0.91273 0.94743 1.41821 1.31037 1.11272 1.55712 0.90478 0.87104 0.84709 0.82000 0.78833 0.77896 0.76802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.74 10.92 21.81 0.24 -44.50 15 2 C 0.03 1.40 5.15 85.20 0.44 1.84 15 3 Si 0.98 38.02 29.59 68.60 2.03 40.05 15 4 H -0.25 -9.13 7.11 99.48 0.71 -8.42 15 5 H -0.27 -10.66 7.11 99.48 0.71 -9.96 15 6 H -0.27 -10.12 7.11 99.48 0.71 -9.41 15 7 C -0.48 -24.03 8.42 23.31 0.20 -23.83 15 8 H 0.09 4.05 6.61 -2.91 -0.02 4.03 15 9 C 0.01 0.68 5.56 -21.35 -0.12 0.57 15 10 C -0.06 -3.04 8.14 22.86 0.19 -2.86 15 11 C -0.23 -10.41 6.06 -18.53 -0.11 -10.52 15 12 C 0.39 15.79 11.27 69.93 0.79 16.57 15 13 O -0.53 -25.48 17.11 -3.33 -0.06 -25.54 15 14 C -0.10 -4.15 6.02 -19.94 -0.12 -4.27 15 15 C -0.11 -3.52 9.75 21.50 0.21 -3.31 15 16 C -0.21 -5.75 11.12 66.64 0.74 -5.01 15 17 S 0.05 1.47 22.67 -56.49 -1.28 0.19 15 18 C -0.20 -8.31 6.39 23.02 0.15 -8.16 15 19 C 0.16 7.47 6.78 39.30 0.27 7.73 15 20 N -0.86 -31.99 8.93 -50.22 -0.45 -32.44 15 21 H 0.28 14.14 8.30 -92.71 -0.77 13.37 15 22 H 0.11 6.50 5.69 -2.91 -0.02 6.48 15 23 H 0.14 3.85 7.29 -2.91 -0.02 3.83 15 24 H 0.16 3.81 7.39 -2.91 -0.02 3.79 15 25 H 0.19 3.65 8.06 -2.91 -0.02 3.63 15 26 H 0.39 12.43 8.23 -92.71 -0.76 11.66 15 27 H 0.40 14.45 6.91 -92.71 -0.64 13.81 15 Total: -1.00 -63.63 253.66 2.95 -60.68 By element: Atomic # 1 Polarization: 32.97 SS G_CDS: -0.15 Total: 32.82 kcal Atomic # 6 Polarization: -33.87 SS G_CDS: 2.62 Total: -31.25 kcal Atomic # 7 Polarization: -76.73 SS G_CDS: -0.21 Total: -76.94 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.06 Total: -25.54 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.05 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -1.28 Total: 0.19 kcal Total: -63.63 2.95 -60.68 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396239344.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.674 kcal (2) G-P(sol) polarization free energy of solvation -63.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds