Wall clock time and date at job start Mon Mar 30 2020 03:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30962 * 1 3 3 Si 1.86801 * 120.00061 * 2 1 4 4 H 1.48497 * 109.47148 * 83.32909 * 3 2 1 5 5 H 1.48504 * 109.47067 * 203.32928 * 3 2 1 6 6 H 1.48496 * 109.47334 * 323.32479 * 3 2 1 7 7 C 1.39829 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99895 * 24.18261 * 7 2 1 9 9 C 1.40826 * 120.00128 * 204.18216 * 7 2 1 10 10 C 1.41121 * 120.24400 * 27.11447 * 9 7 2 11 11 C 1.35369 * 120.26229 * 179.97438 * 10 9 7 12 12 C 1.41618 * 121.02110 * 0.04062 * 11 10 9 13 13 C 1.46237 * 129.21403 * 179.97438 * 12 11 10 14 14 C 1.41767 * 123.17187 * 359.95562 * 13 12 11 15 15 O 1.21399 * 120.00200 * 0.02562 * 14 13 12 16 16 C 1.35831 * 113.65208 * 180.02562 * 13 12 11 17 17 S 1.69993 * 111.97375 * 359.97438 * 16 13 12 18 18 C 1.39349 * 119.63123 * 359.97438 * 12 11 10 19 19 C 1.40146 * 119.75651 * 359.72747 * 18 12 11 20 20 N 1.38720 * 120.08849 * 180.27495 * 19 18 12 21 21 H 0.96999 * 120.00202 * 173.01219 * 1 2 3 22 22 H 1.08001 * 119.86627 * 359.97438 * 10 9 7 23 23 H 1.08004 * 119.49037 * 180.02562 * 11 10 9 24 24 H 1.08006 * 120.00174 * 180.02562 * 14 13 12 25 25 H 1.08006 * 124.01141 * 179.97438 * 16 13 12 26 26 H 0.97003 * 119.99082 * 180.27125 * 20 19 18 27 27 H 0.96988 * 120.00557 * 0.26981 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3096 0.0000 0.0000 3 14 2.2436 1.6177 0.0000 4 1 2.3503 2.1277 1.3906 5 1 3.6045 1.4036 -0.5545 6 1 1.5187 2.6079 -0.8362 7 6 2.0088 -1.2110 -0.0005 8 1 1.5398 -2.1050 -0.3841 9 6 3.3243 -1.2647 0.4990 10 6 3.7500 -0.3447 1.4807 11 6 5.0144 -0.3964 1.9616 12 6 5.9338 -1.3668 1.4942 13 6 7.3267 -1.5836 1.8833 14 6 7.9938 -0.7921 2.8519 15 8 7.4063 0.1165 3.4025 16 6 7.9215 -2.6140 1.2278 17 16 6.8629 -3.3655 0.1304 18 6 5.5338 -2.2844 0.5249 19 6 4.2249 -2.2427 0.0256 20 7 3.8176 -3.1565 -0.9353 21 1 -0.4850 -0.8338 -0.1022 22 1 3.0643 0.4037 1.8499 23 1 5.3269 0.3136 2.7131 24 1 9.0247 -0.9973 3.1001 25 1 8.9455 -2.9194 1.3852 26 1 2.9125 -3.1238 -1.2827 27 1 4.4377 -3.8280 -1.2598 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396241480.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:41 Heat of formation + Delta-G solvation = -3.112381 kcal Electronic energy + Delta-G solvation = -15091.616902 eV Core-core repulsion = 12519.170090 eV Total energy + Delta-G solvation = -2572.446812 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 247.041 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.22926 -37.91607 -35.17106 -33.66764 -32.77377 -29.59292 -27.93771 -25.04777 -24.69491 -21.91019 -20.70049 -19.25102 -18.34896 -17.02555 -16.27411 -15.66531 -15.29053 -14.58991 -14.07455 -13.99569 -13.70623 -13.28541 -13.00821 -12.70624 -12.39335 -11.95537 -11.33617 -11.22319 -10.92723 -10.56679 -10.25735 -10.13605 -9.62529 -9.44436 -9.21219 -9.02254 -8.03643 -7.75618 -7.38911 -6.48402 -4.37919 1.00707 2.23955 2.26947 2.68471 2.69166 3.15753 3.28095 3.50865 3.62898 3.94609 4.44247 4.76138 4.96765 5.25040 5.26517 5.90758 6.01342 6.13039 6.36870 6.41640 6.62381 6.86125 7.13880 7.28201 7.42586 7.60748 7.70380 7.91872 8.07981 8.28270 8.43531 8.66064 8.77915 9.86804 Molecular weight = 247.04amu Principal moments of inertia in cm(-1) A = 0.025989 B = 0.009156 C = 0.007114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.114251 B = 3057.358589 C = 3935.167323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.046 3.954 3 Si 1.066 2.934 4 H -0.273 1.273 5 H -0.261 1.261 6 H -0.287 1.287 7 C -0.501 4.501 8 H 0.078 0.922 9 C 0.065 3.935 10 C -0.193 4.193 11 C -0.072 4.072 12 C -0.136 4.136 13 C -0.164 4.164 14 C 0.393 3.607 15 O -0.466 6.466 16 C -0.214 4.214 17 S 0.097 5.903 18 C -0.171 4.171 19 C 0.141 3.859 20 N -0.877 5.877 21 H 0.287 0.713 22 H 0.112 0.888 23 H 0.115 0.885 24 H 0.087 0.913 25 H 0.158 0.842 26 H 0.396 0.604 27 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.249 -4.300 -0.630 11.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.175 4.175 3 Si 0.891 3.109 4 H -0.199 1.199 5 H -0.185 1.185 6 H -0.214 1.214 7 C -0.530 4.530 8 H 0.096 0.904 9 C 0.056 3.944 10 C -0.213 4.213 11 C -0.094 4.094 12 C -0.140 4.140 13 C -0.181 4.181 14 C 0.252 3.748 15 O -0.342 6.342 16 C -0.351 4.351 17 S 0.363 5.637 18 C -0.290 4.290 19 C 0.033 3.967 20 N -0.419 5.419 21 H 0.099 0.901 22 H 0.129 0.871 23 H 0.133 0.867 24 H 0.103 0.897 25 H 0.176 0.824 26 H 0.226 0.774 27 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 9.858 -3.403 -1.194 10.497 hybrid contribution -0.036 -1.073 0.578 1.219 sum 9.822 -4.476 -0.616 10.812 Atomic orbital electron populations 1.70590 1.08054 1.33555 1.30506 1.27255 0.95470 1.04440 0.90371 0.83667 0.76105 0.72968 0.78176 1.19943 1.18517 1.21423 1.20269 0.97728 0.97422 1.37603 0.90411 1.17275 0.92385 0.91837 0.92862 1.20558 0.96485 1.03457 1.00824 1.20312 0.92446 0.97121 0.99542 1.18083 0.92174 1.01083 1.02689 1.19888 0.95454 0.99978 1.02775 1.22210 0.92129 0.81281 0.79184 1.90494 1.69457 1.27532 1.46713 1.25007 1.04025 1.02181 1.03849 1.82142 1.02798 1.35887 1.42875 1.21677 0.96686 1.03860 1.06821 1.16999 0.89512 0.96112 0.94033 1.41848 1.16321 1.36612 1.47086 0.90096 0.87082 0.86699 0.89718 0.82396 0.77424 0.79551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.61 13.66 55.54 0.76 -19.85 15 2 C 0.05 1.14 5.32 -17.33 -0.09 1.05 15 3 Si 1.07 23.75 25.04 -169.99 -4.26 19.50 15 4 H -0.27 -5.88 6.69 56.52 0.38 -5.50 15 5 H -0.26 -5.89 7.05 56.52 0.40 -5.49 15 6 H -0.29 -6.19 7.11 56.52 0.40 -5.79 15 7 C -0.50 -12.56 8.79 -38.01 -0.33 -12.89 15 8 H 0.08 1.94 6.87 -52.49 -0.36 1.58 15 9 C 0.07 1.60 5.13 -106.73 -0.55 1.06 15 10 C -0.19 -4.69 7.28 -39.51 -0.29 -4.97 15 11 C -0.07 -1.69 9.46 -39.32 -0.37 -2.06 15 12 C -0.14 -3.01 6.03 -104.98 -0.63 -3.64 15 13 C -0.16 -3.00 5.83 -106.20 -0.62 -3.62 15 14 C 0.39 6.37 11.29 32.08 0.36 6.73 15 15 O -0.47 -9.20 15.50 5.45 0.08 -9.12 15 16 C -0.21 -3.30 10.66 29.87 0.32 -2.99 15 17 S 0.10 1.61 22.38 -107.50 -2.41 -0.79 15 18 C -0.17 -3.69 6.37 -38.45 -0.25 -3.93 15 19 C 0.14 3.20 6.82 -82.94 -0.57 2.64 15 20 N -0.88 -16.77 8.97 32.90 0.30 -16.48 15 21 H 0.29 7.11 8.73 -40.82 -0.36 6.75 15 22 H 0.11 2.65 4.82 -52.49 -0.25 2.40 15 23 H 0.12 2.61 6.32 -52.48 -0.33 2.28 15 24 H 0.09 0.95 8.06 -52.48 -0.42 0.53 15 25 H 0.16 1.77 8.06 -52.48 -0.42 1.35 15 26 H 0.40 7.42 7.03 -40.82 -0.29 7.13 15 27 H 0.38 6.22 8.29 -40.82 -0.34 5.89 15 LS Contribution 247.55 15.07 3.73 3.73 Total: -1.00 -28.13 247.55 -6.40 -34.53 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -1.60 Total: 11.13 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -3.01 Total: -22.64 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 1.05 Total: -36.33 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.08 Total: -9.12 kcal Atomic # 14 Polarization: 23.75 SS G_CDS: -4.26 Total: 19.50 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.41 Total: -0.79 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -28.13 -6.40 -34.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396241480.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.419 kcal (2) G-P(sol) polarization free energy of solvation -28.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds