Wall clock time and date at job start Mon Mar 30 2020 03:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30592 * 1 3 3 Si 1.86801 * 119.99533 * 2 1 4 4 H 1.48497 * 109.47385 * 275.27540 * 3 2 1 5 5 H 1.48505 * 109.47353 * 35.27660 * 3 2 1 6 6 H 1.48504 * 109.46968 * 155.27552 * 3 2 1 7 7 C 1.40355 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00477 * 347.04099 * 7 2 1 9 9 C 1.40491 * 119.99699 * 167.04062 * 7 2 1 10 10 C 1.40793 * 119.94205 * 330.85556 * 9 7 2 11 11 C 1.36119 * 120.27029 * 180.02562 * 10 9 7 12 12 C 1.39793 * 120.71491 * 359.97438 * 11 10 9 13 13 C 1.46429 * 119.76052 * 180.02562 * 12 11 10 14 14 O 1.21378 * 119.99603 * 4.66454 * 13 12 11 15 15 C 1.42856 * 120.47846 * 0.04578 * 12 11 10 16 16 C 1.45259 * 129.26685 * 179.97438 * 15 12 11 17 17 N 1.40613 * 122.62329 * 359.96878 * 16 15 12 18 18 C 1.32568 * 114.75992 * 180.24458 * 16 15 12 19 19 S 1.75300 * 111.23573 * 359.58662 * 18 16 15 20 20 C 1.39372 * 118.76634 * 359.95465 * 15 12 11 21 21 H 0.96998 * 120.00380 * 359.97438 * 1 2 3 22 22 H 1.08007 * 119.86579 * 0.04926 * 10 9 7 23 23 H 1.08002 * 119.64109 * 179.97438 * 11 10 9 24 24 H 1.08000 * 120.00118 * 184.66394 * 13 12 11 25 25 H 0.96997 * 119.99722 * 37.62805 * 17 16 15 26 26 H 0.97000 * 119.99935 * 217.35345 * 17 16 15 27 27 H 1.07999 * 124.37888 * 179.73329 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2398 1.6178 0.0000 4 1 2.3758 2.1109 -1.3941 5 1 1.4974 2.6180 0.8086 6 1 3.5887 1.4107 0.5856 7 6 2.0077 -1.2155 -0.0005 8 1 1.4885 -2.1390 0.2088 9 6 3.3858 -1.2307 -0.2734 10 6 3.9479 -0.2459 -1.1080 11 6 5.2821 -0.2546 -1.3772 12 6 6.1142 -1.2368 -0.8319 13 6 7.5467 -1.2260 -1.1350 14 8 8.0222 -0.3195 -1.7873 15 6 5.5769 -2.2511 0.0185 16 6 6.2566 -3.3511 0.6804 17 7 7.6396 -3.5725 0.5558 18 6 5.4703 -4.1333 1.4065 19 16 3.8066 -3.5833 1.3565 20 6 4.2106 -2.2414 0.2936 21 1 -0.4850 0.8400 0.0004 22 1 3.3179 0.5199 -1.5360 23 1 5.7025 0.5055 -2.0191 24 1 8.1802 -2.0246 -0.7782 25 1 8.2503 -2.8196 0.5239 26 1 7.9833 -4.4782 0.5059 27 1 5.8111 -4.9962 1.9593 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396242580.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:10 Heat of formation + Delta-G solvation = -10.761554 kcal Electronic energy + Delta-G solvation = -15106.240607 eV Core-core repulsion = 12533.462102 eV Total energy + Delta-G solvation = -2572.778505 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 247.041 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.68786 -39.04169 -37.54289 -35.56477 -32.78433 -32.51912 -29.95985 -27.89026 -24.50167 -23.99821 -22.18388 -21.31414 -19.49676 -18.57120 -17.71865 -17.13400 -16.93358 -16.20218 -16.05792 -15.65757 -15.16205 -15.09381 -14.62356 -14.31519 -14.19745 -13.37694 -13.32384 -12.88443 -12.77641 -12.39880 -11.98392 -11.72801 -11.46740 -11.19905 -10.82090 -10.34944 -9.68422 -9.29310 -9.20782 -8.14057 -6.71451 -0.29369 0.41003 0.99584 1.17072 1.29816 1.39984 1.46031 1.58641 1.64593 2.01423 2.57038 3.18795 3.27749 3.66053 3.93244 4.20279 4.39167 4.54731 4.71080 4.85707 4.98746 5.12186 5.21871 5.38254 5.50041 5.74337 5.85661 6.04929 6.34511 6.46408 6.65540 6.77558 7.17510 7.82517 Molecular weight = 247.04amu Principal moments of inertia in cm(-1) A = 0.022229 B = 0.010487 C = 0.007407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.285959 B = 2669.397419 C = 3779.211067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.055 3.945 3 Si 0.964 3.036 4 H -0.254 1.254 5 H -0.270 1.270 6 H -0.252 1.252 7 C -0.425 4.425 8 H 0.079 0.921 9 C 0.130 3.870 10 C -0.275 4.275 11 C -0.006 4.006 12 C -0.314 4.314 13 C 0.386 3.614 14 O -0.538 6.538 15 C -0.008 4.008 16 C 0.166 3.834 17 N -0.873 5.873 18 C -0.262 4.262 19 S 0.075 5.925 20 C -0.236 4.236 21 H 0.308 0.692 22 H 0.109 0.891 23 H 0.117 0.883 24 H 0.125 0.875 25 H 0.398 0.602 26 H 0.409 0.591 27 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.104 -4.493 2.977 9.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.167 4.167 3 Si 0.787 3.213 4 H -0.180 1.180 5 H -0.196 1.196 6 H -0.176 1.176 7 C -0.451 4.451 8 H 0.097 0.903 9 C 0.124 3.876 10 C -0.297 4.297 11 C -0.025 4.025 12 C -0.319 4.319 13 C 0.254 3.746 14 O -0.420 6.420 15 C -0.020 4.020 16 C 0.054 3.946 17 N -0.428 5.428 18 C -0.402 4.402 19 S 0.336 5.664 20 C -0.351 4.351 21 H 0.120 0.880 22 H 0.127 0.873 23 H 0.134 0.866 24 H 0.141 0.859 25 H 0.231 0.769 26 H 0.241 0.759 27 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 6.619 -4.526 3.366 8.697 hybrid contribution 1.054 1.017 -0.781 1.660 sum 7.674 -3.509 2.584 8.825 Atomic orbital electron populations 1.69511 1.09118 1.33055 1.30169 1.26973 0.95500 1.04277 0.89982 0.85486 0.79760 0.76056 0.80014 1.17962 1.19620 1.17609 1.19780 0.92125 0.95949 1.37220 0.90251 1.17343 0.92199 0.89857 0.88246 1.20483 0.95911 1.05006 1.08315 1.20572 0.92817 0.94931 0.94195 1.19978 0.96671 1.02508 1.12781 1.24072 0.88772 0.86565 0.75212 1.90433 1.77413 1.38675 1.35520 1.19250 0.91712 0.95155 0.95913 1.17243 0.86934 0.94548 0.95852 1.42188 1.01012 1.10806 1.88777 1.24772 0.96601 1.09625 1.09173 1.83615 1.07875 1.23588 1.51325 1.22678 0.96348 1.05925 1.10181 0.88029 0.87343 0.86551 0.85943 0.76885 0.75922 0.79338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.64 13.92 21.90 0.30 -38.33 15 2 C 0.06 2.67 5.47 85.39 0.47 3.14 15 3 Si 0.96 39.74 24.36 68.60 1.67 41.41 15 4 H -0.25 -9.99 6.77 99.48 0.67 -9.32 15 5 H -0.27 -10.27 7.11 99.48 0.71 -9.56 15 6 H -0.25 -11.06 6.48 99.48 0.65 -10.42 15 7 C -0.42 -21.69 9.35 23.33 0.22 -21.47 15 8 H 0.08 4.29 7.97 -2.91 -0.02 4.26 15 9 C 0.13 6.36 5.21 -21.11 -0.11 6.25 15 10 C -0.28 -12.92 6.80 22.40 0.15 -12.77 15 11 C -0.01 -0.25 9.46 22.15 0.21 -0.04 15 12 C -0.31 -13.09 5.93 -19.61 -0.12 -13.21 15 13 C 0.39 13.87 10.95 69.95 0.77 14.63 15 14 O -0.54 -22.34 17.11 -3.33 -0.06 -22.40 15 15 C -0.01 -0.34 6.01 -20.05 -0.12 -0.46 15 16 C 0.17 5.31 6.90 38.38 0.26 5.58 15 17 N -0.87 -19.56 8.13 -50.25 -0.41 -19.97 15 18 C -0.26 -7.98 11.00 66.67 0.73 -7.25 15 19 S 0.07 2.83 22.87 -56.49 -1.29 1.54 15 20 C -0.24 -10.63 6.36 23.54 0.15 -10.48 15 21 H 0.31 13.18 8.29 -92.71 -0.77 12.41 15 22 H 0.11 4.93 4.19 -2.91 -0.01 4.92 15 23 H 0.12 4.90 7.58 -2.91 -0.02 4.88 15 24 H 0.12 3.33 4.59 -2.91 -0.01 3.31 15 25 H 0.40 8.16 6.27 -92.71 -0.58 7.58 15 26 H 0.41 6.64 8.96 -92.71 -0.83 5.81 15 27 H 0.19 4.30 8.06 -2.91 -0.02 4.28 15 Total: -1.00 -58.24 246.09 2.58 -55.66 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -0.25 Total: 18.17 kcal Atomic # 6 Polarization: -38.70 SS G_CDS: 2.61 Total: -36.08 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.10 Total: -58.30 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.06 Total: -22.40 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 1.67 Total: 41.41 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -1.29 Total: 1.54 kcal Total: -58.24 2.58 -55.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396242580.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.898 kcal (2) G-P(sol) polarization free energy of solvation -58.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds