Wall clock time and date at job start Mon Mar 30 2020 03:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30577 * 1 3 3 Si 1.86798 * 120.00384 * 2 1 4 4 H 1.48509 * 109.47024 * 239.99863 * 3 2 1 5 5 H 1.48500 * 109.46796 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47503 * 119.99369 * 3 2 1 7 7 C 1.40464 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00187 * 196.12794 * 7 2 1 9 9 C 1.39511 * 119.99911 * 16.12825 * 7 2 1 10 10 C 1.48073 * 120.62640 * 44.06710 * 9 7 2 11 11 C 1.40010 * 128.80449 * 359.95571 * 10 9 7 12 12 C 1.32714 * 115.79272 * 180.30342 * 11 10 9 13 13 S 1.75485 * 110.61786 * 359.97438 * 12 11 10 14 14 C 1.39443 * 118.37575 * 180.26816 * 10 9 7 15 15 C 1.40772 * 120.68997 * 359.73335 * 14 10 9 16 16 N 1.38878 * 118.86071 * 179.97438 * 15 14 10 17 17 C 1.38302 * 122.28153 * 359.97438 * 15 14 10 18 18 C 1.39600 * 120.75355 * 0.02562 * 17 15 14 19 19 C 1.46268 * 120.42562 * 180.02562 * 18 17 15 20 20 O 1.21406 * 119.99750 * 174.76903 * 19 18 17 21 21 H 0.96993 * 119.99692 * 354.88246 * 1 2 3 22 22 H 1.08000 * 122.10164 * 0.31903 * 11 10 9 23 23 H 1.07999 * 124.69242 * 180.02562 * 12 11 10 24 24 H 0.97003 * 119.99955 * 179.97438 * 16 15 14 25 25 H 0.96997 * 119.99980 * 359.97438 * 16 15 14 26 26 H 1.08000 * 119.62246 * 180.02562 * 17 15 14 27 27 H 1.08003 * 120.00226 * 355.04433 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 3.0937 1.6962 -1.2126 5 1 1.2749 2.7464 -0.0006 6 1 3.0935 1.6964 1.2125 7 6 2.0081 -1.2165 0.0005 8 1 3.0562 -1.2348 0.2604 9 6 1.3516 -2.4010 -0.3346 10 6 0.4326 -2.4521 -1.4945 11 6 0.0832 -1.4278 -2.3827 12 6 -0.7776 -1.7595 -3.3368 13 16 -1.2373 -3.4471 -3.1949 14 6 -0.2031 -3.6590 -1.7837 15 6 0.0294 -4.8008 -0.9939 16 7 -0.6243 -5.9830 -1.3158 17 6 0.8863 -4.7862 0.0916 18 6 1.5634 -3.6194 0.4508 19 6 2.4685 -3.6121 1.5998 20 8 3.1254 -2.6220 1.8489 21 1 -0.4849 0.8367 0.0749 22 1 0.4888 -0.4305 -2.2970 23 1 -1.1438 -1.0845 -4.0962 24 1 -0.4760 -6.7799 -0.7830 25 1 -1.2293 -6.0119 -2.0735 26 1 1.0334 -5.6877 0.6678 27 1 2.5557 -4.4891 2.2241 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396244232.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:00 Heat of formation + Delta-G solvation = 8.605798 kcal Electronic energy + Delta-G solvation = -15312.147733 eV Core-core repulsion = 12740.209060 eV Total energy + Delta-G solvation = -2571.938673 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 247.041 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.39897 -37.00135 -35.17807 -33.75930 -32.10583 -28.72008 -28.41171 -24.90762 -23.44149 -21.99763 -20.20900 -18.83475 -17.96544 -16.39686 -16.01313 -15.34680 -14.91396 -14.33000 -14.05706 -13.83122 -13.12402 -13.02087 -12.39768 -12.24547 -12.01167 -11.61522 -11.38216 -11.13701 -10.82426 -10.79460 -10.70360 -10.18813 -9.82956 -9.33722 -8.77041 -8.17117 -7.78117 -7.35933 -7.04700 -6.21263 -4.38703 1.65336 2.36495 2.54343 2.93919 2.99586 3.04208 3.06968 3.38492 3.82028 4.01600 4.47311 4.83336 5.29116 5.54139 5.84427 6.00937 6.39034 6.53659 6.67657 6.70402 6.91960 7.03543 7.22601 7.32180 7.42413 7.69608 7.78858 8.29919 8.41345 8.53411 8.61290 8.71008 9.00829 9.91791 Molecular weight = 247.04amu Principal moments of inertia in cm(-1) A = 0.020714 B = 0.011533 C = 0.007711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.394439 B = 2427.138452 C = 3630.500639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.405 4.405 8 H 0.110 0.890 9 C 0.177 3.823 10 C -0.101 4.101 11 C -0.035 4.035 12 C -0.263 4.263 13 S 0.005 5.995 14 C -0.114 4.114 15 C 0.107 3.893 16 N -0.896 5.896 17 C -0.085 4.085 18 C -0.299 4.299 19 C 0.369 3.631 20 O -0.492 6.492 21 H 0.289 0.711 22 H 0.129 0.871 23 H 0.147 0.853 24 H 0.386 0.614 25 H 0.382 0.618 26 H 0.103 0.897 27 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.782 -3.892 -3.235 5.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.150 4.150 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.432 4.432 8 H 0.128 0.872 9 C 0.170 3.830 10 C -0.109 4.109 11 C -0.065 4.065 12 C -0.396 4.396 13 S 0.265 5.735 14 C -0.232 4.232 15 C 0.004 3.996 16 N -0.440 5.440 17 C -0.112 4.112 18 C -0.304 4.304 19 C 0.236 3.764 20 O -0.372 6.372 21 H 0.100 0.900 22 H 0.147 0.853 23 H 0.164 0.836 24 H 0.212 0.788 25 H 0.208 0.792 26 H 0.121 0.879 27 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.607 -3.977 -4.036 6.237 hybrid contribution 0.650 1.228 0.684 1.549 sum -1.957 -2.749 -3.351 4.756 Atomic orbital electron populations 1.69698 1.07890 1.30654 1.30447 1.26216 0.94772 1.01726 0.92291 0.86289 0.80352 0.79215 0.80762 1.18293 1.20097 1.18247 1.19793 0.99033 0.89944 1.34410 0.87250 1.19287 0.85940 0.91581 0.86199 1.19109 1.03454 0.90581 0.97755 1.19805 0.95352 0.99360 0.91961 1.24664 1.09623 0.97771 1.07524 1.83249 1.50961 1.09326 1.29932 1.22164 1.03797 0.97375 0.99904 1.16204 1.00505 0.85009 0.97866 1.41856 1.54512 1.10242 1.37432 1.20025 0.97892 0.97066 0.96217 1.20917 1.11357 0.95298 1.02871 1.22922 0.79972 0.89256 0.84285 1.90436 1.40325 1.35943 1.70508 0.89964 0.85301 0.83572 0.78782 0.79221 0.87858 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.80 11.03 55.58 0.61 -18.18 15 2 C 0.07 1.75 4.00 -17.25 -0.07 1.68 15 3 Si 0.91 18.27 29.60 -169.99 -5.03 13.24 15 4 H -0.26 -5.08 7.11 56.52 0.40 -4.68 15 5 H -0.28 -5.31 7.11 56.52 0.40 -4.91 15 6 H -0.26 -5.30 7.11 56.52 0.40 -4.90 15 7 C -0.40 -10.52 7.40 -38.27 -0.28 -10.80 15 8 H 0.11 2.92 6.37 -52.49 -0.33 2.59 15 9 C 0.18 4.57 5.60 -102.06 -0.57 4.00 15 10 C -0.10 -2.48 5.50 -104.75 -0.58 -3.06 15 11 C -0.04 -0.81 8.34 -40.80 -0.34 -1.15 15 12 C -0.26 -5.31 11.11 28.85 0.32 -4.99 15 13 S 0.00 0.09 22.60 -107.50 -2.43 -2.34 15 14 C -0.11 -2.59 6.41 -38.18 -0.24 -2.83 15 15 C 0.11 2.24 6.74 -83.69 -0.56 1.68 15 16 N -0.90 -14.82 9.03 32.51 0.29 -14.53 15 17 C -0.09 -1.78 9.50 -39.05 -0.37 -2.15 15 18 C -0.30 -7.07 6.04 -102.84 -0.62 -7.69 15 19 C 0.37 8.17 11.40 33.96 0.39 8.55 15 20 O -0.49 -12.44 14.70 5.45 0.08 -12.36 15 21 H 0.29 6.49 8.30 -40.82 -0.34 6.15 15 22 H 0.13 2.96 6.37 -52.49 -0.33 2.62 15 23 H 0.15 2.51 8.06 -52.49 -0.42 2.08 15 24 H 0.39 5.28 8.79 -40.82 -0.36 4.92 15 25 H 0.38 5.92 8.16 -40.82 -0.33 5.58 15 26 H 0.10 1.79 8.05 -52.49 -0.42 1.36 15 27 H 0.06 1.06 8.06 -52.48 -0.42 0.64 15 LS Contribution 252.47 15.07 3.80 3.80 Total: -1.00 -28.30 252.47 -7.36 -35.66 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -1.76 Total: 11.46 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -2.93 Total: -16.76 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 0.91 Total: -32.71 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.08 Total: -12.36 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -2.43 Total: -2.34 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -28.30 -7.36 -35.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396244232.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.270 kcal (2) G-P(sol) polarization free energy of solvation -28.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds