Wall clock time and date at job start Mon Mar 30 2020 03:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30577 * 1 3 3 Si 1.86798 * 120.00384 * 2 1 4 4 H 1.48509 * 109.47024 * 239.99863 * 3 2 1 5 5 H 1.48500 * 109.46796 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47503 * 119.99369 * 3 2 1 7 7 C 1.40464 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00187 * 196.12794 * 7 2 1 9 9 C 1.39511 * 119.99911 * 16.12825 * 7 2 1 10 10 C 1.48073 * 120.62640 * 44.06710 * 9 7 2 11 11 C 1.40010 * 128.80449 * 359.95571 * 10 9 7 12 12 C 1.32714 * 115.79272 * 180.30342 * 11 10 9 13 13 S 1.75485 * 110.61786 * 359.97438 * 12 11 10 14 14 C 1.39443 * 118.37575 * 180.26816 * 10 9 7 15 15 C 1.40772 * 120.68997 * 359.73335 * 14 10 9 16 16 N 1.38878 * 118.86071 * 179.97438 * 15 14 10 17 17 C 1.38302 * 122.28153 * 359.97438 * 15 14 10 18 18 C 1.39600 * 120.75355 * 0.02562 * 17 15 14 19 19 C 1.46268 * 120.42562 * 180.02562 * 18 17 15 20 20 O 1.21406 * 119.99750 * 174.76903 * 19 18 17 21 21 H 0.96993 * 119.99692 * 354.88246 * 1 2 3 22 22 H 1.08000 * 122.10164 * 0.31903 * 11 10 9 23 23 H 1.07999 * 124.69242 * 180.02562 * 12 11 10 24 24 H 0.97003 * 119.99955 * 179.97438 * 16 15 14 25 25 H 0.96997 * 119.99980 * 359.97438 * 16 15 14 26 26 H 1.08000 * 119.62246 * 180.02562 * 17 15 14 27 27 H 1.08003 * 120.00226 * 355.04433 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 3.0937 1.6962 -1.2126 5 1 1.2749 2.7464 -0.0006 6 1 3.0935 1.6964 1.2125 7 6 2.0081 -1.2165 0.0005 8 1 3.0562 -1.2348 0.2604 9 6 1.3516 -2.4010 -0.3346 10 6 0.4326 -2.4521 -1.4945 11 6 0.0832 -1.4278 -2.3827 12 6 -0.7776 -1.7595 -3.3368 13 16 -1.2373 -3.4471 -3.1949 14 6 -0.2031 -3.6590 -1.7837 15 6 0.0294 -4.8008 -0.9939 16 7 -0.6243 -5.9830 -1.3158 17 6 0.8863 -4.7862 0.0916 18 6 1.5634 -3.6194 0.4508 19 6 2.4685 -3.6121 1.5998 20 8 3.1254 -2.6220 1.8489 21 1 -0.4849 0.8367 0.0749 22 1 0.4888 -0.4305 -2.2970 23 1 -1.1438 -1.0845 -4.0962 24 1 -0.4760 -6.7799 -0.7830 25 1 -1.2293 -6.0119 -2.0735 26 1 1.0334 -5.6877 0.6678 27 1 2.5557 -4.4891 2.2241 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396244232.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:59 Heat of formation + Delta-G solvation = -9.225600 kcal Electronic energy + Delta-G solvation = -15312.920960 eV Core-core repulsion = 12740.209060 eV Total energy + Delta-G solvation = -2572.711901 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 247.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.10580 -38.78258 -36.78899 -35.50836 -33.75783 -30.44225 -30.07017 -26.60787 -25.15827 -23.71280 -21.85967 -20.53287 -19.70379 -18.00219 -17.68733 -16.95388 -16.58677 -15.96667 -15.71540 -15.44128 -14.80731 -14.77613 -14.16212 -13.94643 -13.69536 -13.31800 -13.03164 -12.86935 -12.46867 -12.37337 -12.32035 -11.84501 -11.52794 -11.07189 -10.46498 -9.92106 -9.37866 -9.02231 -8.79910 -7.87600 -6.17259 -0.04122 0.59190 0.92877 1.27903 1.34845 1.44014 1.45214 1.72367 2.17207 2.26842 2.70059 3.42355 3.53290 3.92318 4.27615 4.45979 4.70755 4.85835 5.02664 5.08449 5.16061 5.33627 5.51641 5.64978 5.74861 5.96989 6.08603 6.47757 6.68514 6.80194 7.02790 7.28315 7.35011 8.19120 Molecular weight = 247.04amu Principal moments of inertia in cm(-1) A = 0.020714 B = 0.011533 C = 0.007711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.394439 B = 2427.138452 C = 3630.500639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.043 3.957 3 Si 0.969 3.031 4 H -0.255 1.255 5 H -0.259 1.259 6 H -0.268 1.268 7 C -0.442 4.442 8 H 0.087 0.913 9 C 0.140 3.860 10 C -0.125 4.125 11 C -0.066 4.066 12 C -0.253 4.253 13 S 0.069 5.931 14 C -0.151 4.151 15 C 0.115 3.885 16 N -0.880 5.880 17 C -0.093 4.093 18 C -0.320 4.320 19 C 0.369 3.631 20 O -0.530 6.530 21 H 0.294 0.706 22 H 0.117 0.883 23 H 0.178 0.822 24 H 0.403 0.597 25 H 0.390 0.610 26 H 0.143 0.857 27 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.931 -5.331 -4.036 7.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.176 4.176 3 Si 0.790 3.210 4 H -0.179 1.179 5 H -0.183 1.183 6 H -0.193 1.193 7 C -0.470 4.470 8 H 0.105 0.895 9 C 0.134 3.866 10 C -0.133 4.133 11 C -0.096 4.096 12 C -0.386 4.386 13 S 0.330 5.670 14 C -0.269 4.269 15 C 0.010 3.990 16 N -0.425 5.425 17 C -0.120 4.120 18 C -0.326 4.326 19 C 0.238 3.762 20 O -0.412 6.412 21 H 0.105 0.895 22 H 0.135 0.865 23 H 0.196 0.804 24 H 0.232 0.768 25 H 0.217 0.783 26 H 0.161 0.839 27 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.785 -5.473 -4.852 8.236 hybrid contribution 0.911 1.455 0.852 1.917 sum -2.873 -4.018 -4.000 6.356 Atomic orbital electron populations 1.69718 1.08807 1.31500 1.31783 1.26776 0.95390 1.03925 0.91528 0.85438 0.79265 0.76117 0.80186 1.17859 1.18282 1.19315 1.19712 0.98390 0.91563 1.37309 0.89547 1.19757 0.87176 0.92604 0.87111 1.19343 1.04037 0.92009 0.97961 1.19801 0.97355 0.99015 0.93386 1.25154 1.07540 0.99209 1.06662 1.82903 1.48991 1.07680 1.27378 1.22607 1.04884 0.97492 1.01909 1.16424 0.99693 0.85809 0.97066 1.41746 1.53614 1.09470 1.37691 1.20338 0.97397 0.97577 0.96727 1.21412 1.11982 0.95825 1.03341 1.23634 0.78441 0.90066 0.84095 1.90427 1.41671 1.37895 1.71248 0.89451 0.86488 0.80426 0.76763 0.78326 0.83897 0.86685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.32 11.03 21.92 0.24 -40.08 15 2 C 0.04 2.16 4.00 85.42 0.34 2.50 15 3 Si 0.97 38.84 29.60 68.60 2.03 40.87 15 4 H -0.25 -9.87 7.11 99.48 0.71 -9.16 15 5 H -0.26 -9.51 7.11 99.48 0.71 -8.80 15 6 H -0.27 -11.05 7.11 99.48 0.71 -10.34 15 7 C -0.44 -24.18 7.40 23.12 0.17 -24.01 15 8 H 0.09 4.95 6.37 -2.91 -0.02 4.93 15 9 C 0.14 7.48 5.60 -18.21 -0.10 7.38 15 10 C -0.13 -6.25 5.50 -19.95 -0.11 -6.36 15 11 C -0.07 -3.06 8.34 21.53 0.18 -2.88 15 12 C -0.25 -9.77 11.11 66.65 0.74 -9.03 15 13 S 0.07 2.49 22.60 -56.49 -1.28 1.21 15 14 C -0.15 -6.64 6.41 23.18 0.15 -6.49 15 15 C 0.11 4.56 6.74 38.66 0.26 4.82 15 16 N -0.88 -25.98 9.03 -51.07 -0.46 -26.44 15 17 C -0.09 -3.71 9.50 22.61 0.21 -3.49 15 18 C -0.32 -15.16 6.04 -18.71 -0.11 -15.27 15 19 C 0.37 16.20 11.40 69.91 0.80 16.99 15 20 O -0.53 -27.53 14.70 -3.42 -0.05 -27.58 15 21 H 0.29 13.55 8.30 -92.71 -0.77 12.78 15 22 H 0.12 5.56 6.37 -2.91 -0.02 5.54 15 23 H 0.18 5.58 8.06 -2.91 -0.02 5.55 15 24 H 0.40 9.36 8.79 -92.71 -0.81 8.55 15 25 H 0.39 10.61 8.16 -92.71 -0.76 9.86 15 26 H 0.14 4.38 8.05 -2.91 -0.02 4.36 15 27 H 0.12 3.76 8.06 -2.91 -0.02 3.74 15 Total: -1.00 -63.55 252.47 2.69 -60.86 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: -0.33 Total: 27.00 kcal Atomic # 6 Polarization: -38.37 SS G_CDS: 2.53 Total: -35.84 kcal Atomic # 7 Polarization: -66.30 SS G_CDS: -0.22 Total: -66.52 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.05 Total: -27.58 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -1.28 Total: 1.21 kcal Total: -63.55 2.69 -60.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396244232.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.634 kcal (2) G-P(sol) polarization free energy of solvation -63.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds