Wall clock time and date at job start Mon Mar 30 2020 03:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30892 * 1 3 3 Si 1.86799 * 120.00066 * 2 1 4 4 H 1.48499 * 109.47035 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47468 * 300.00151 * 3 2 1 6 6 H 1.48499 * 109.46871 * 59.99860 * 3 2 1 7 7 C 1.39882 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99798 * 197.95365 * 7 2 1 9 9 C 1.41073 * 120.00078 * 17.95711 * 7 2 1 10 10 C 1.40031 * 119.97685 * 25.10499 * 9 7 2 11 11 C 1.39627 * 119.70769 * 179.97438 * 10 9 7 12 12 C 1.47004 * 119.83874 * 179.72241 * 11 10 9 13 13 O 1.21283 * 119.99969 * 359.97438 * 12 11 10 14 14 C 1.39506 * 120.31932 * 359.97438 * 11 10 9 15 15 C 1.40862 * 120.77632 * 0.02562 * 14 11 10 16 16 C 1.45541 * 128.92525 * 179.97438 * 15 14 11 17 17 C 1.32675 * 114.72658 * 180.02562 * 16 15 14 18 18 N 1.39121 * 124.33946 * 180.02562 * 17 16 15 19 19 S 1.75265 * 111.31949 * 0.02562 * 17 16 15 20 20 C 1.39715 * 119.21787 * 0.02562 * 15 14 11 21 21 H 0.97001 * 119.99501 * 0.02562 * 1 2 3 22 22 H 1.07995 * 120.14707 * 359.97438 * 10 9 7 23 23 H 1.07994 * 119.99569 * 179.97438 * 12 11 10 24 24 H 1.08001 * 119.61438 * 180.02562 * 14 11 10 25 25 H 1.08002 * 122.63616 * 0.02908 * 16 15 14 26 26 H 0.96997 * 120.00005 * 179.97438 * 18 17 16 27 27 H 0.97001 * 120.00027 * 359.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7029 1.3463 0.0006 5 1 1.8842 2.3965 -1.2124 6 1 1.8841 2.3964 1.2125 7 6 2.0083 -1.2114 -0.0005 8 1 3.0488 -1.2343 0.2878 9 6 1.3544 -2.4032 -0.3777 10 6 0.2395 -2.3521 -1.2234 11 6 -0.4030 -3.5352 -1.5936 12 6 -1.5774 -3.4844 -2.4763 13 8 -1.9862 -2.4166 -2.8809 14 6 0.0609 -4.7648 -1.1256 15 6 1.1809 -4.8359 -0.2742 16 6 1.8098 -6.0095 0.3134 17 6 2.8603 -5.7503 1.0812 18 7 3.6096 -6.7202 1.7395 19 16 3.1830 -4.0294 1.1599 20 6 1.8282 -3.6560 0.1012 21 1 -0.4849 0.8401 -0.0004 22 1 -0.1218 -1.4018 -1.5877 23 1 -2.0761 -4.3979 -2.7646 24 1 -0.4445 -5.6728 -1.4195 25 1 1.4497 -7.0125 0.1382 26 1 4.3675 -6.4596 2.2858 27 1 3.3742 -7.6572 1.6520 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396251571.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:20 Heat of formation + Delta-G solvation = -4.841479 kcal Electronic energy + Delta-G solvation = -14807.228150 eV Core-core repulsion = 12234.706359 eV Total energy + Delta-G solvation = -2572.521791 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 247.041 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.61843 -37.43843 -35.75113 -33.85746 -31.77620 -30.26310 -26.93082 -25.58507 -23.89288 -21.41272 -20.94085 -19.15225 -17.79683 -16.68203 -16.09971 -15.49162 -15.26345 -14.63113 -14.42613 -13.59799 -13.39606 -12.95272 -12.81758 -12.72138 -12.30169 -11.70689 -11.25016 -11.16114 -10.90233 -10.62622 -10.44554 -10.00595 -9.69048 -9.33799 -8.91102 -8.84759 -8.18154 -7.04787 -6.85329 -6.63632 -4.47611 1.80801 2.10255 2.22729 2.87968 3.03037 3.07965 3.09692 3.42760 3.58734 3.84126 4.28238 4.54783 5.13699 5.42580 5.91201 6.11417 6.38076 6.40570 6.46070 6.79897 6.97850 7.05002 7.16630 7.46708 7.59176 7.68120 7.71996 7.91733 8.00500 8.30830 8.37266 8.63691 8.67354 10.01262 Molecular weight = 247.04amu Principal moments of inertia in cm(-1) A = 0.017501 B = 0.010166 C = 0.006556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.532881 B = 2753.532485 C = 4269.938649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.451 4.451 8 H 0.083 0.917 9 C 0.138 3.862 10 C -0.108 4.108 11 C -0.159 4.159 12 C 0.384 3.616 13 O -0.477 6.477 14 C -0.182 4.182 15 C -0.016 4.016 16 C -0.239 4.239 17 C 0.110 3.890 18 N -0.860 5.860 19 S 0.054 5.946 20 C -0.210 4.210 21 H 0.287 0.713 22 H 0.137 0.863 23 H 0.083 0.917 24 H 0.100 0.900 25 H 0.122 0.878 26 H 0.396 0.604 27 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.923 -7.247 1.677 8.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.480 4.480 8 H 0.101 0.899 9 C 0.132 3.868 10 C -0.131 4.131 11 C -0.162 4.162 12 C 0.244 3.756 13 O -0.352 6.352 14 C -0.204 4.204 15 C -0.023 4.023 16 C -0.275 4.275 17 C -0.107 4.107 18 N -0.404 5.404 19 S 0.309 5.691 20 C -0.326 4.326 21 H 0.098 0.902 22 H 0.154 0.846 23 H 0.099 0.901 24 H 0.118 0.882 25 H 0.140 0.860 26 H 0.223 0.777 27 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 4.563 -5.681 2.210 7.614 hybrid contribution -0.491 -0.616 -0.347 0.861 sum 4.072 -6.297 1.864 7.727 Atomic orbital electron populations 1.69828 1.07627 1.29979 1.32401 1.25957 0.94794 1.01653 0.92126 0.86196 0.80991 0.80474 0.78860 1.18143 1.19353 1.19712 1.19561 0.98255 0.91092 1.39087 0.89898 1.16903 0.91280 0.89395 0.89182 1.21509 0.96859 0.96833 0.97903 1.20277 0.98949 0.94669 1.02268 1.23973 0.83002 0.91786 0.76792 1.90455 1.62478 1.34876 1.47382 1.20176 0.99495 0.95298 1.05469 1.18419 0.95923 0.90156 0.97812 1.20264 1.00854 0.98416 1.08015 1.21325 0.96349 0.94443 0.98548 1.41474 1.35469 1.06340 1.57130 1.83581 1.35235 0.94755 1.55488 1.22425 1.03276 0.97497 1.09434 0.90232 0.84582 0.90081 0.88163 0.86040 0.77662 0.77417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.89 10.98 55.54 0.61 -19.28 15 2 C 0.08 1.85 5.12 -17.34 -0.09 1.76 15 3 Si 0.91 18.36 29.60 -169.99 -5.03 13.33 15 4 H -0.26 -5.13 7.11 56.52 0.40 -4.73 15 5 H -0.27 -5.36 7.11 56.52 0.40 -4.96 15 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 15 7 C -0.45 -11.65 8.81 -37.89 -0.33 -11.98 15 8 H 0.08 2.07 7.73 -52.49 -0.41 1.67 15 9 C 0.14 3.63 5.59 -106.61 -0.60 3.03 15 10 C -0.11 -2.80 8.21 -38.39 -0.32 -3.12 15 11 C -0.16 -3.64 5.84 -105.35 -0.62 -4.26 15 12 C 0.38 7.69 11.43 34.28 0.39 8.08 15 13 O -0.48 -11.12 17.13 5.55 0.10 -11.02 15 14 C -0.18 -3.90 9.82 -38.12 -0.37 -4.27 15 15 C -0.02 -0.36 6.02 -105.44 -0.63 -0.99 15 16 C -0.24 -4.59 10.38 -38.56 -0.40 -4.99 15 17 C 0.11 1.96 7.44 -16.13 -0.12 1.84 15 18 N -0.86 -11.09 9.10 31.23 0.28 -10.80 15 19 S 0.05 1.10 22.78 -107.50 -2.45 -1.35 15 20 C -0.21 -5.08 6.37 -37.49 -0.24 -5.32 15 21 H 0.29 6.70 8.30 -40.82 -0.34 6.36 15 22 H 0.14 3.77 5.73 -52.49 -0.30 3.47 15 23 H 0.08 1.24 8.06 -52.49 -0.42 0.81 15 24 H 0.10 1.80 8.06 -52.49 -0.42 1.38 15 25 H 0.12 2.02 8.06 -52.49 -0.42 1.60 15 26 H 0.40 4.32 8.95 -40.82 -0.37 3.95 15 27 H 0.40 4.13 8.92 -40.82 -0.36 3.77 15 LS Contribution 259.72 15.07 3.91 3.91 Total: -1.00 -29.34 259.72 -7.74 -37.08 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -1.84 Total: 8.35 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -3.32 Total: -20.22 kcal Atomic # 7 Polarization: -30.97 SS G_CDS: 0.89 Total: -30.08 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.10 Total: -11.02 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.45 Total: -1.35 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.34 -7.74 -37.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396251571.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.241 kcal (2) G-P(sol) polarization free energy of solvation -29.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds